Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G08280 557 / 0 HEMC hydroxymethylbilane synthase (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.005G091600 [exp] 706 / 0 AT5G08280 542 / 0.0 hydroxymethylbilane synthase (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10013439 [exp] 616 / 0 AT5G08280 543 / 0.0 hydroxymethylbilane synthase (.1) Lus10040987 [exp] 593 / 0 AT5G08280 519 / 0.0 hydroxymethylbilane synthase (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0177 [poplar] [flax] PBP PF01379 [poplar] [flax] Porphobil_deam Porphobilinogen deaminase, dipyromethane cofactor binding domain CL0177 [poplar] [flax] PF03900 [poplar] [flax] Porphobil_deamC Porphobilinogen deaminase, C-terminal domain
Representative CDS sequence Show only first row Show all	>Potri.007G072500.1 pacid=42766156 polypeptide=Potri.007G072500.1.p locus=Potri.007G072500 ID=Potri.007G072500.1.v4.1 annot-version=v4.1 ATGGAGACTCTATCTTCTCTATGTACAAGCCAAGCGCTAATGTCCCGTCCATCAAGTCCAGCCATTTTTTGCACTAGTGGGTCTGTTTCTTTTACTGGGT TTTCTCTAAAAACTCAAGCTTTTTCAAAAAAGAAACAGACTTTGAGTTTTGTCAAGGCTTCTGTTGCTGTCGAGCAGCAAACCCAGGAAGCTAAAGTTGC TCTCATTAGAATTGGCACTAGAGGAAGCCCGCTTGCACTTGCTCAAGCTCATGAGACACGAGACAAGCTCATGGCTTCGCATTCAGATCTAGCCGAAGAA GGAGCTATACAAATTGTGATAATAAAGACAACAGGAGATAAGATACAAAGTCAACCACTTGCAGACATCGGTGGGAAAGGATTGTTCACGAAAGAAATAG ACGAGGCACTGATAAATGGTGACATTGACATTGCCGTTCACTCAATGAAAGATGTTCCTACATATTTACCAGAGAAGACAATCCTCCCCTGTAACCTTCC ACGTGAGGATGTTAGGGATGCATTTATTTCCTTGAGTGCAGCTTCACTAGCAGATCTTCCTGCTGGTAGTATCATTGGAACTGCCTCACTCAGAAGAAAG TCACAAATACTCCACAGATATCCATCACTCAGTGTGGAAGAAAATTTTCGGGGCAATGTTCAGACAAGGCTGAGAAAACTTAATGAAGGAGTTGTAAAAG CAACGCTATTGGCATTAGCTGGACTTAAACGCTTAAATATGACAGAAAATGTAACTTCCATTCTTCCACTTGATGACATGCTTCCAGCAGTTGCCCAGGG TGCAATTGGAATTGCGTGTCGAAGCAATGATGATAAAATGGTTAATTATTTGGCTTCATTGAACCACGAGGAAACAAGACTAGCAGTTGCATGTGAGAGG GCCTTTCTTGAAACCTTAGACGGGTCCTGTCGTACTCCTATCGCTGGATATGCTAGAAAAGATGAAAATGGTGATTGCATATTTAAGGGGCTGGTTGCTT CTCCTGATGGTAGACGTGTACTGGAAACTTCAAGAAAAGGTCCATATGCTTTTGATGATATGATTGCGATGGGGAAGGATGCCGGCAAGGAACTTCTTTC ACAGGCAGGCCCTGGATTCTTCGACCGATGA
AA sequence Show only first row Show all	>Potri.007G072500.1 pacid=42766156 polypeptide=Potri.007G072500.1.p locus=Potri.007G072500 ID=Potri.007G072500.1.v4.1 annot-version=v4.1 METLSSLCTSQALMSRPSSPAIFCTSGSVSFTGFSLKTQAFSKKKQTLSFVKASVAVEQQTQEAKVALIRIGTRGSPLALAQAHETRDKLMASHSDLAEE GAIQIVIIKTTGDKIQSQPLADIGGKGLFTKEIDEALINGDIDIAVHSMKDVPTYLPEKTILPCNLPREDVRDAFISLSAASLADLPAGSIIGTASLRRK SQILHRYPSLSVEENFRGNVQTRLRKLNEGVVKATLLALAGLKRLNMTENVTSILPLDDMLPAVAQGAIGIACRSNDDKMVNYLASLNHEETRLAVACER AFLETLDGSCRTPIAGYARKDENGDCIFKGLVASPDGRRVLETSRKGPYAFDDMIAMGKDAGKELLSQAGPGFFDR

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G08280		HEMC	hydroxymethylbilane synthase (...		Potri.007G072500 [exp]	0	1
AT5G35630		ATGSL1, GLN2, G...	GLUTAMINE SYNTHETASE LIKE 1, g...		Potri.010G029100 [exp]	4.12	0.9237	NCPGS.7
AT4G25080		CHLM	magnesium-protoporphyrin IX me...		Potri.012G106600 [exp]	6.48	0.9509
AT2G01918		PQL3	PsbQ-like 3 (.1)		Potri.017G129700 [exp]	7.07	0.9471
AT3G26570		ORF02, PHT2;1	phosphate transporter 2;1 (.1....		Potri.010G046300 [exp]	11.31	0.9352
AT4G25050		ACP4	acyl carrier protein 4 (.1.2)		Potri.012G105300 [exp]	12.00	0.9370
AT2G06520		PSBX	photosystem II subunit X (.1)		Potri.006G222300 [exp]	12.36	0.9466
AT1G74070			Cyclophilin-like peptidyl-prol...		Potri.012G058700 [exp]	14.49	0.9331
AT1G06680		PSII-P, OEE2, P...	OXYGEN-EVOLVING ENHANCER PROTE...		Potri.005G206700 [exp]	15.23	0.9411	OEE2.1
AT1G53520			Chalcone-flavanone isomerase f...		Potri.011G101800 [exp]	15.65	0.9154
AT2G26500			cytochrome b6f complex subunit...		Potri.014G037000 [exp]	17.43	0.9243

Compare expression of checked genes

Potri.007G072500 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.