Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G08290 293 / 5e-104 YLS8 YELLOW-LEAF-SPECIFIC GENE 8, mRNA splicing factor, thioredoxin-like U5 snRNP (.1) AT3G24730 96 / 1e-25 mRNA splicing factor, thioredoxin-like U5 snRNP (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G287600 [exp] 81 / 3e-20 AT3G24730 245 / 8e-85 mRNA splicing factor, thioredoxin-like U5 snRNP (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10017390 [exp] 293 / 7e-104 AT5G08290 290 / 1e-102 YELLOW-LEAF-SPECIFIC GENE 8, mRNA splicing factor, thioredoxin-like U5 snRNP (.1) Lus10010188 [exp] 289 / 2e-102 AT5G08290 293 / 4e-104 YELLOW-LEAF-SPECIFIC GENE 8, mRNA splicing factor, thioredoxin-like U5 snRNP (.1) Lus10022811 [exp] 100 / 2e-27 AT3G24730 261 / 7e-91 mRNA splicing factor, thioredoxin-like U5 snRNP (.1) Lus10011878 [exp] 96 / 6e-26 AT3G24730 258 / 1e-89 mRNA splicing factor, thioredoxin-like U5 snRNP (.1) Lus10010189 [exp] 91 / 2e-24 AT5G08290 87 / 4e-23 YELLOW-LEAF-SPECIFIC GENE 8, mRNA splicing factor, thioredoxin-like U5 snRNP (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0172 [poplar] [flax] Thioredoxin PF00085 [poplar] [flax] Thioredoxin Thioredoxin
Representative CDS sequence Show only first row Show all	>Potri.007G072700.6 pacid=42764984 polypeptide=Potri.007G072700.6.p locus=Potri.007G072700 ID=Potri.007G072700.6.v4.1 annot-version=v4.1 ATGTCGTACTTGCTACCACACTTGCACTCTGGATGGGCAGTGGATCAAGCCATCTTAGCGGAGGAGGAACGTGTGGTCATCATCAGATTCGGTCATGACT GGGATGACACCTGCATGCAGATGGACGAAGTGTTGGCATCAGTAGCAGAAACGATAAAGAATTTTGCTGTGATATACCTGGTGGACATCACAGAGGTTCC TGATTTTAACACAATGTATGAGTTGTATGATCCATCTACTGTCATGTTCTTCTTCAGGAACAAGCATATTATGATTGATCTTGGAACTGGTAATAACAAC AAGATCAACTGGGCTCTCAAAGACAAGCAGGAATTCATTGACATTGTTGAGACTGTCTACCGGGGGGCAAGGAAGGGTCGTGGTCTTGTCATTGCTCCGA AAGACTACTCCACAAAGTACCGCTACTAG
AA sequence Show only first row Show all	>Potri.007G072700.6 pacid=42764984 polypeptide=Potri.007G072700.6.p locus=Potri.007G072700 ID=Potri.007G072700.6.v4.1 annot-version=v4.1 MSYLLPHLHSGWAVDQAILAEEERVVIIRFGHDWDDTCMQMDEVLASVAETIKNFAVIYLVDITEVPDFNTMYELYDPSTVMFFFRNKHIMIDLGTGNNN KINWALKDKQEFIDIVETVYRGARKGRGLVIAPKDYSTKYRY

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G08290		YLS8	YELLOW-LEAF-SPECIFIC GENE 8, m...		Potri.007G072700 [exp]	0	1
AT2G27800			Tetratricopeptide repeat (TPR)...		Potri.018G093700 [exp]	3.87	0.8298
AT5G10730			NAD(P)-binding Rossmann-fold s...		Potri.006G268000 [exp]	4.00	0.7960
AT3G59280		TXR1	THAXTOMIN A RESISTANT 1, Prote...		Potri.014G151200 [exp]	4.24	0.8674	TXR1.1
AT3G56830			Protein of unknown function (D...		Potri.002G146000 [exp]	4.24	0.8337
AT5G01650			Tautomerase/MIF superfamily pr...		Potri.016G126700 [exp]	8.12	0.7904
AT5G51700		ATRAR1, RPR2, P...	Required for Mla12 resistance ...		Potri.015G132300 [exp]	10.72	0.7936	PBS2.1
AT2G17450		RHA3A	RING-H2 finger A3A (.1)		Potri.007G057300 [exp]	13.22	0.7423
AT1G22840		CYTC-1, ATCYTC-...	CYTOCHROME C-A, CYTOCHROME C-1...		Potri.019G076001 [exp]	13.49	0.7626
AT4G27130			Translation initiation factor ...		Potri.007G122600 [exp]	15.68	0.6947
AT1G30500	CCAAT	NF-YA7	"nuclear factor Y, subunit A7"...		Potri.001G372100 [exp]	16.09	0.7276

Compare expression of checked genes

Potri.007G072700 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.