Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G19940 671 / 0 Major facilitator superfamily protein (.1) AT1G50310 668 / 0 ATSTP9 sugar transporter 9 (.1) AT5G23270 647 / 0 ATSTP11, STP11 sugar transporter 11 (.1) AT3G19930 628 / 0 ATSTP4, STP4 sugar transporter 4 (.1) AT1G11260 621 / 0 ATSTP1, STP1 sugar transporter 1 (.1) AT4G21480 605 / 0 STP12 sugar transporter protein 12 (.1) AT5G26340 563 / 0 ATSTP13, MSS1, STP13 SUGAR TRANSPORT PROTEIN 13, Major facilitator superfamily protein (.1) AT4G02050 550 / 0 STP7 sugar transporter protein 7 (.1) AT1G77210 505 / 5e-176 AtSTP14 sugar transport protein 14, sugar transporter 14 (.1.2) AT1G07340 476 / 8e-165 ATSTP2 sugar transporter 2 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.005G090700 [exp] 763 / 0 AT3G19940 710 / 0.0 Major facilitator superfamily protein (.1) Potri.007G073900 [exp] 751 / 0 AT3G19940 706 / 0.0 Major facilitator superfamily protein (.1) Potri.007G073850 [exp] 736 / 0 AT3G19940 699 / 0.0 Major facilitator superfamily protein (.1) Potri.007G073800 [exp] 736 / 0 AT3G19940 699 / 0.0 Major facilitator superfamily protein (.1) Potri.004G033600 [exp] 640 / 0 AT1G11260 822 / 0.0 sugar transporter 1 (.1) Potri.011G042100 [exp] 629 / 0 AT1G11260 808 / 0.0 sugar transporter 1 (.1) Potri.001G110400 [exp] 575 / 0 AT1G11260 658 / 0.0 sugar transporter 1 (.1) Potri.004G101900 [exp] 557 / 0 AT1G11260 625 / 0.0 sugar transporter 1 (.1) Potri.004G101950 [exp] 557 / 0 AT1G11260 625 / 0.0 sugar transporter 1 (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10013441 [exp] 731 / 0 AT1G50310 731 / 0.0 sugar transporter 9 (.1) Lus10018422 [exp] 635 / 0 AT1G11260 835 / 0.0 sugar transporter 1 (.1) Lus10040991 [exp] 619 / 0 AT3G19940 666 / 0.0 Major facilitator superfamily protein (.1) Lus10040993 [exp] 612 / 0 AT1G50310 601 / 0.0 sugar transporter 9 (.1) Lus10002597 [exp] 608 / 0 AT1G11260 798 / 0.0 sugar transporter 1 (.1) Lus10010534 [exp] 574 / 0 AT5G26340 902 / 0.0 SUGAR TRANSPORT PROTEIN 13, Major facilitator superfamily protein (.1) Lus10002450 [exp] 569 / 0 AT5G26340 905 / 0.0 SUGAR TRANSPORT PROTEIN 13, Major facilitator superfamily protein (.1) Lus10021924 [exp] 547 / 0 AT5G26340 832 / 0.0 SUGAR TRANSPORT PROTEIN 13, Major facilitator superfamily protein (.1) Lus10036325 [exp] 511 / 2e-178 AT4G02050 801 / 0.0 sugar transporter protein 7 (.1) Lus10009656 [exp] 507 / 2e-176 AT5G61520 608 / 0.0 Major facilitator superfamily protein (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0015 [poplar] [flax] MFS PF07690 [poplar] [flax] MFS_1 Major Facilitator Superfamily
Representative CDS sequence Show only first row Show all	>Potri.007G072800.1 pacid=42764874 polypeptide=Potri.007G072800.1.p locus=Potri.007G072800 ID=Potri.007G072800.1.v4.1 annot-version=v4.1 ATGGCAGGAGGAGGTTTTGCGGCGGCTCAAGGTGACGGGAGAAAATACGAAGGTGGTGTCACTGCTTTTGTGGTCATCACTTGTCTGGTGGCAGCCATGG GGGGGCTCATGTTTGGCTATGATATTGGCATCTCAGGAGGGGTAACAGCGATGGATTCATTCCTTAAACCATTTTTCCCCCATGTGTACAAGAAACAGCA TGGAAATCATGAGGAAAATATGTACTGCAAATTTGATGATCATGTGCTAACGATGTTCACATCTTCCCTCTATCTTGCGGCCTTGATAGCTTCCTTCTTT GCCTCTGCAACAACGAGGAGATTTGGTCGTAAGATGTCTATGATGTTTGGAGGCCTGGTTTTCCTTGGCGGAGCTATTCTTAATGGTGCTGCTGTCAATG TTGCGATGCTTATTGTTGGTCGTTTGATGCTTGGTGTGGGTGTTGGATTTGCTAATCAGTCTGTTCCGGTTTATCTCTCAGAAATGGCACCGGCGAACCT TAGAGGAGCACTCAATATTGGATTTCAAATGGCAATCACAATTGGTATTTTGGCAGCCAATCTCATCAATTATGGGACTTCCAAGATAAAAGCTGGTTGG GGATGGAGAATTTCTTTAGGCCTTGCAGCAGCCCCGGCAATTCTTTTTACAATCGGCTCTCTCTTTCTACCCGATACCCCCAACTCCATTCTTGAGAGGG GCAACCATGAGAAAGCGAAGAAAATGTTGCAAAAGATTCGAGGCACGAACAATGTCGACGAAGAATTTCAGGATCTTGTTGATGCTAGTATGGCTGCAAA GCAAGTTGAGCACCCATGGAAAAACTTCACAGGCCGAAAATATAGACCTCAATTAATCATTTGCACCTTCATCCCTTTCTTCCAGCAACTTACGGGAATT AATGTCATCATGTTTTATGCACCTGTTCTCTTTAAGACTTTGGGTTTTGGTGACGATGCCTCGCTTATGTCTGCTGTCATAACCGGCGTAGTCAATGTTG TGGCCACAATGGTATCTGTTTATTCCGTTGATAAACTAGGAAGGAAGGCTTTATTTCTTGAAGGTGGCGTGCAAATGATCATATGTCAGGTTCTTGTTGC AGTTATGATAGGGCGTGCTTTTGGGACAGAAGGGGAGGGAGGGATGTCTAAGAGTGTATCCTCCTTGGTGCTGTTTTTGATATGTGCGTATGTCGCAGCT TTTGCATGGTCTTGGGGTCCTTTGGGATGGCTAGTGCCGAGTGAAATTTGCCCTCTGGAGATCCGATCAGCAGGACAAGCAACCAATGTCTCGGTTAACA TGTTCTTCACATTTGTAATTGGCCAATTCTTCCTCTCCATGCTTTGTCACATGAAGTTTGGTCTCTTCTTATTTTTTGGTGGATTTGTTATTATCATGAC CATTTTCATATATTATTTTGTGCCTGAGACCAAGAATGTCCCAATTGAAGAAATGAATCAGGTGTGGAAAGAACATGGGTTTTGGAGCAAGTATGTCTCA AACGATGATGTCACTGGCAGGACAAGCAGCCCACCCTAG
AA sequence Show only first row Show all	>Potri.007G072800.1 pacid=42764874 polypeptide=Potri.007G072800.1.p locus=Potri.007G072800 ID=Potri.007G072800.1.v4.1 annot-version=v4.1 MAGGGFAAAQGDGRKYEGGVTAFVVITCLVAAMGGLMFGYDIGISGGVTAMDSFLKPFFPHVYKKQHGNHEENMYCKFDDHVLTMFTSSLYLAALIASFF ASATTRRFGRKMSMMFGGLVFLGGAILNGAAVNVAMLIVGRLMLGVGVGFANQSVPVYLSEMAPANLRGALNIGFQMAITIGILAANLINYGTSKIKAGW GWRISLGLAAAPAILFTIGSLFLPDTPNSILERGNHEKAKKMLQKIRGTNNVDEEFQDLVDASMAAKQVEHPWKNFTGRKYRPQLIICTFIPFFQQLTGI NVIMFYAPVLFKTLGFGDDASLMSAVITGVVNVVATMVSVYSVDKLGRKALFLEGGVQMIICQVLVAVMIGRAFGTEGEGGMSKSVSSLVLFLICAYVAA FAWSWGPLGWLVPSEICPLEIRSAGQATNVSVNMFFTFVIGQFFLSMLCHMKFGLFLFFGGFVIIMTIFIYYFVPETKNVPIEEMNQVWKEHGFWSKYVS NDDVTGRTSSPP

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT3G19940			Major facilitator superfamily ...		Potri.007G072800 [exp]	0	1
					Potri.008G210450 [exp]	24.24	0.8966
ATCG00020		ATCG00020.1, PS...	photosystem II reaction center...		Potri.013G138300 [exp]	56.28	0.8383
					Potri.019G133550 [exp]	59.16	0.8657
AT1G10657			Plant protein 1589 of unknown ...		Potri.010G042300 [exp]	106.37	0.8528
AT1G52340		SIS4, SDR1, ISI...	SHORT-CHAIN DEHYDROGENASE REDU...		Potri.016G073700 [exp]	117.98	0.8483
					Potri.001G033500 [exp]	118.70	0.8509
AT5G06490			RING/U-box superfamily protein...		Potri.008G019000 [exp]	120.77	0.8515
AT2G16780		MSI02, NFC2, NF...	NUCLEOSOME/CHROMATIN ASSEMBLY ...		Potri.004G175300 [exp]	182.44	0.8268
					Potri.001G341700 [exp]	222.06	0.8201
AT5G65890		ACR1	ACT domain repeat 1 (.1.2)		Potri.014G006700 [exp]	232.55	0.8102

Compare expression of checked genes

Potri.007G072800 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.