Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G23260 256 / 3e-86 MADS ABS, TT16, AGL32 TRANSPARENT TESTA16, AGAMOUS-like 32, ARABIDOPSIS BSISTER, K-box region and MADS-box transcription factor family protein (.1.2.3) AT1G69120 134 / 1e-38 MADS AGL7, AP1 APETALA1, AGAMOUS-like 7, K-box region and MADS-box transcription factor family protein (.1) AT1G26310 130 / 4e-37 MADS CAL1, AGL10, CAL CAULIFLOWER, AGAMOUS-like 10, K-box region and MADS-box transcription factor family protein (.1) AT3G57230 129 / 1e-36 MADS AGL16 AGAMOUS-like 16 (.1.2) AT5G60910 129 / 2e-36 MADS FUL, AGL8 FRUITFULL, AGAMOUS-like 8 (.1.2) AT5G20240 126 / 7e-36 MADS PI, PISTILLATA PISTILLATA, K-box region and MADS-box transcription factor family protein (.1) AT5G13790 125 / 5e-35 MADS AGL15 AGAMOUS-like 15 (.1) AT5G62165 123 / 9e-35 MADS FYF, AGL42 FOREVER YOUNG FLOWER, AGAMOUS-like 42 (.1.2.3.4.5) AT4G37940 122 / 4e-34 MADS AGL21 AGAMOUS-like 21 (.1) AT4G09960 120 / 2e-33 MADS AGL11, STK SEEDSTICK, AGAMOUS-like 11, K-box region and MADS-box transcription factor family protein (.1.2.3.4)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.015G125501 [exp] 208 / 3e-67 AT5G23260 192 / 6e-61 TRANSPARENT TESTA16, AGAMOUS-like 32, ARABIDOPSIS BSISTER, K-box region and MADS-box transcription factor family protein (.1.2.3) Potri.012G125600 [exp] 204 / 5e-66 AT5G23260 183 / 2e-57 TRANSPARENT TESTA16, AGAMOUS-like 32, ARABIDOPSIS BSISTER, K-box region and MADS-box transcription factor family protein (.1.2.3) Potri.017G099800 [exp] 139 / 1e-40 AT5G60910 255 / 7e-86 FRUITFULL, AGAMOUS-like 8 (.1.2) Potri.008G098500 [exp] 134 / 2e-38 AT1G69120 336 / 9e-118 APETALA1, AGAMOUS-like 7, K-box region and MADS-box transcription factor family protein (.1) Potri.012G132600 [exp] 132 / 5e-38 AT2G45650 182 / 3e-57 AGAMOUS-like 6 (.1) Potri.012G062300 [exp] 132 / 5e-38 AT5G60910 288 / 5e-99 FRUITFULL, AGAMOUS-like 8 (.1.2) Potri.004G115400 [exp] 132 / 1e-37 AT5G60910 230 / 7e-76 FRUITFULL, AGAMOUS-like 8 (.1.2) Potri.015G134800 [exp] 131 / 4e-37 AT2G45650 209 / 2e-67 AGAMOUS-like 6 (.1) Potri.002G109601 [exp] 129 / 4e-37 AT3G57230 299 / 1e-103 AGAMOUS-like 16 (.1.2)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10017388 [exp] 275 / 9e-94 AT5G23260 220 / 4e-72 TRANSPARENT TESTA16, AGAMOUS-like 32, ARABIDOPSIS BSISTER, K-box region and MADS-box transcription factor family protein (.1.2.3) Lus10010184 [exp] 267 / 1e-90 AT5G23260 218 / 3e-71 TRANSPARENT TESTA16, AGAMOUS-like 32, ARABIDOPSIS BSISTER, K-box region and MADS-box transcription factor family protein (.1.2.3) Lus10026679 [exp] 134 / 1e-38 AT1G69120 338 / 1e-118 APETALA1, AGAMOUS-like 7, K-box region and MADS-box transcription factor family protein (.1) Lus10021140 [exp] 134 / 2e-38 AT5G60910 291 / 1e-99 FRUITFULL, AGAMOUS-like 8 (.1.2) Lus10007983 [exp] 134 / 3e-38 AT5G60910 298 / 3e-102 FRUITFULL, AGAMOUS-like 8 (.1.2) Lus10004637 [exp] 132 / 3e-38 AT1G69120 318 / 2e-111 APETALA1, AGAMOUS-like 7, K-box region and MADS-box transcription factor family protein (.1) Lus10034370 [exp] 132 / 4e-38 AT1G69120 224 / 1e-73 APETALA1, AGAMOUS-like 7, K-box region and MADS-box transcription factor family protein (.1) Lus10034662 [exp] 131 / 2e-37 AT5G60910 284 / 3e-97 FRUITFULL, AGAMOUS-like 8 (.1.2) Lus10017871 [exp] 128 / 5e-37 AT1G69120 264 / 2e-90 APETALA1, AGAMOUS-like 7, K-box region and MADS-box transcription factor family protein (.1) Lus10005081 [exp] 130 / 2e-36 AT1G69120 223 / 1e-72 APETALA1, AGAMOUS-like 7, K-box region and MADS-box transcription factor family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF00319 [poplar] [flax] SRF-TF SRF-type transcription factor (DNA-binding and dimerisation domain) PF01486 [poplar] [flax] K-box K-box region
Representative CDS sequence Show only first row Show all	>Potri.007G073000.2 pacid=42765515 polypeptide=Potri.007G073000.2.p locus=Potri.007G073000 ID=Potri.007G073000.2.v4.1 annot-version=v4.1 ATGGGGCGTGGAAAGATAGCCATTAGGAGGATTGAGAACCAGACAACAAGGCAAGTCACCTTCTCAAAGCGTCGAGCTGGGCTTTTGAAGAAGACTCATG AACTTTCAGTGCTATGTGATGCTCAAATCGGGCTCATCATCTTTTCCAGCACTGGAAAGTTGTGTCAGTACTGCACCGAGGGTTTGAGGATGGAGCAACT CATAGAGAGGTACCAGAAGATTTCTGGAACTCGCATTCCTGAGCACGATAGCCAGGAACAACTATTTGGAGAATTGGCGATGCTGAGGAACGAGACTCGC CGTCTTCAATCTAACATGCGCCGCTATACAGGTGAAGATACGAGCTCTATTCCTTTCGAGGAGTTGGATGAAGTAGAACAAGAACTTGAACGCTCGGTTA TCAAGGTCCGAGATCGCAAGAATGAGCTCTTGCACCAGCAGCTGGAAAATCTTCGCAGGAAGGAGCGTATGTTGGAGGAGGAAAACAGCAATATGTACCG CTGGATTCAGGAGCATCGTGTAGCGCTGGAATATCAGCACGCAGCGATGGAAGCAAAGCCGGTGGAACCTCAGCAAGTCCTGGATCAATTCCCATTCTGT GGAGAACCCAGTAGTGTGCTGCAGCTTTCAACCATCTCTCATCAAATTGATCCATACCATCTTCAGCTTGCTCAACCCTGCCTTCAAGGTTCTAGTGTCT AG
AA sequence Show only first row Show all	>Potri.007G073000.2 pacid=42765515 polypeptide=Potri.007G073000.2.p locus=Potri.007G073000 ID=Potri.007G073000.2.v4.1 annot-version=v4.1 MGRGKIAIRRIENQTTRQVTFSKRRAGLLKKTHELSVLCDAQIGLIIFSSTGKLCQYCTEGLRMEQLIERYQKISGTRIPEHDSQEQLFGELAMLRNETR RLQSNMRRYTGEDTSSIPFEELDEVEQELERSVIKVRDRKNELLHQQLENLRRKERMLEEENSNMYRWIQEHRVALEYQHAAMEAKPVEPQQVLDQFPFC GEPSSVLQLSTISHQIDPYHLQLAQPCLQGSSV

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G23260	MADS	ABS, TT16, AGL3...	TRANSPARENT TESTA16, AGAMOUS-l...		Potri.007G073000 [exp]	0	1
AT4G29250			HXXXD-type acyl-transferase fa...		Potri.018G032700 [exp]	3.74	0.7938
AT5G02070			Protein kinase family protein ...		Potri.006G090200 [exp]	6.92	0.6087
					Potri.006G047250 [exp]	7.41	0.7309
AT4G14965		ATMAPR4	membrane-associated progestero...		Potri.006G023801 [exp]	8.94	0.6383
AT4G33865			Ribosomal protein S14p/S29e fa...		Potri.004G043600 [exp]	10.58	0.6707
AT3G42880			Leucine-rich repeat protein ki...		Potri.001G166300 [exp]	11.22	0.5936
AT1G57775			Protein of unknown function (D...		Potri.004G110875 [exp]	14.28	0.5912
AT5G48670	MADS	FEM111, AGL80	AGAMOUS-like 80 (.1)		Potri.013G001700 [exp]	18.24	0.6442
					Potri.006G070200 [exp]	19.00	0.5775
AT5G55690	MADS		MADS-box transcription factor ...		Potri.001G214900 [exp]	20.85	0.5313

Compare expression of checked genes

Potri.007G073000 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.