Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G08305 601 / 0 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT5G06540 393 / 3e-130 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT2G42920 372 / 8e-123 Pentatricopeptide repeat (PPR-like) superfamily protein (.1) AT5G66520 373 / 2e-122 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT1G74630 360 / 3e-117 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT3G62890 354 / 1e-115 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT5G40405 353 / 5e-115 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT5G48910 351 / 1e-113 LPA66 LOW PSII ACCUMULATION 66, Pentatricopeptide repeat (PPR) superfamily protein (.1) AT2G22410 351 / 2e-113 SLO1 SLOW GROWTH 1 (.1) AT2G20540 343 / 8e-112 MEF21 mitochondrial editing factor 21 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.016G065500 [exp] 431 / 4e-145 AT5G06540 828 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.005G202600 [exp] 392 / 5e-131 AT2G42920 660 / 0.0 Pentatricopeptide repeat (PPR-like) superfamily protein (.1) Potri.002G258766 [exp] 382 / 6e-127 AT1G06150 705 / 0.0 EMBRYO DEFECTIVE 1444, basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1), basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.2) Potri.002G175900 [exp] 373 / 1e-123 AT5G08510 608 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.004G237000 [exp] 374 / 5e-123 AT5G66520 544 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.017G086100 [exp] 369 / 5e-122 AT5G15300 675 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.018G035900 [exp] 369 / 6e-122 AT2G20540 709 / 0.0 mitochondrial editing factor 21 (.1) Potri.016G128900 [exp] 373 / 9e-122 AT3G08820 812 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.005G012600 [exp] 371 / 3e-121 AT2G29760 540 / 0.0 ORGANELLE TRANSCRIPT PROCESSING 81, Tetratricopeptide repeat (TPR)-like superfamily protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10010183 [exp] 615 / 0 AT5G08305 529 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10017386 [exp] 446 / 2e-154 AT5G08305 357 / 9e-120 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10029344 [exp] 431 / 6e-145 AT5G06540 803 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10007341 [exp] 375 / 3e-124 AT2G42920 610 / 0.0 Pentatricopeptide repeat (PPR-like) superfamily protein (.1) Lus10014298 [exp] 372 / 1e-121 AT5G66520 748 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10026006 [exp] 371 / 1e-121 AT5G66520 746 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10018223 [exp] 363 / 4e-117 AT2G29760 931 / 0.0 ORGANELLE TRANSCRIPT PROCESSING 81, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10031423 [exp] 358 / 5e-116 AT5G66520 538 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10040680 [exp] 358 / 2e-115 AT2G29760 926 / 0.0 ORGANELLE TRANSCRIPT PROCESSING 81, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10010909 [exp] 356 / 2e-115 AT5G66520 537 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0020 [poplar] [flax] TPR PF01535 [poplar] [flax] PPR PPR repeat CL0020 [poplar] [flax] TPR PF13041 [poplar] [flax] PPR_2 PPR repeat family CL0020 [poplar] [flax] TPR PF13812 [poplar] [flax] PPR_3 Pentatricopeptide repeat domain
Representative CDS sequence Show only first row Show all	>Potri.007G073100.1 pacid=42766688 polypeptide=Potri.007G073100.1.p locus=Potri.007G073100 ID=Potri.007G073100.1.v4.1 annot-version=v4.1 ATGTTACCTAGAAATCCTAATCTAAATTTAAAAAGAACCCTAATCACCTTCCTTGATAAATGCAAATCAATGCTACAATTGAACCAACTTCATGCTCTAG TAATCACCTTTGGCCTCTCTCAAGATGACCTATTTATGTCAAGAATCGTTTCTTTCTCTGCTTTATCTGATTCAAACAACACTGATTATTCTTACAGGGC TTTGTTAAATCTCCAAGACCCAACTATCTTTGAATGGAACTCAGTCATTAGGGGTTATTCAAAGAGCAAGAACCCAAATAAATCCATTTCAGTTTTTGTC AAAATGTTGCAAGTTGGAATCTACCCTGATCATTTAACATACCCTTTTCTTGCTAAGGCGACATCGCGACTTTTAAGGAAAGAACTAGGGGTTTCAATTC ATGGGCATGTAATAAAATCTGGGTTTGAGATAGATAGGTTTGTTGCTAATTCTTTGATTCATATGTATGGTTCTTGTGGTGATATCGTGTATGCTCGGAA GGTGTTTGATGGAACTCCTGTGAAGAACTTGGTGTCGTGGAATTCGATGGTTGATGGGTATGCAAAGTGTGGATATTTGGATTTGGCGCGTGGTTTGTTT GATTTGATGCCTGAAAGAGATGTTAGGTCATGGAGTTGTTTAATTGATGGGTATGCTAAAAGTGGGAATTACGGGGATGCTATGGCAGTTTTTGAGAAGA TGCGGACTTCAGGCCCCAAGGCTAATGAGGTTACTATGGTTAGTGTGCTATGTGCTTGTGCTCATTTGGGTGCTCTTGATAAAGGGAGGATGATGCATCA ATATTTGGTTGATAATGGGTTCGAATTAAATTTGGTTTTGCGGACTTCTCTTATTGACATGTATGCAAAATGTGGGGCAGTTGAGGAGGCTTTCGCTGTG TTTCGTGGGGTCTCGCTGAGAAAGAGCGATGTGTTAATTTGGAATGCTATGATTGGAGGGCTAGCAACTCATGGTTTGGTTAAGGAATCGCTTGATTTGT ATACAGAGATGCAAATAGCTGGGATTAAACCGGATGAGATCACGTTTCTGTGCTTGTTGAGTGCTTGTGCTCATGGTGGATTAGTAAAGCAAGCTTCGTA TGTCTTCGAGGGTCTTGGTAAAAATGGCATGACACCGAAGACTGAGCATTATGCTTGTATGGTGGATGTTATGGCTCGTGCTGGTCAAGTGGCGGAGGCA TATCAGTTTTTGTGTCAAATGCCACTTGAACCGACGGCTTCAATGTTAGGTGCTTTACTTAGTGGATGCATGAACCATGGAAAATTAGATCTTGCCGAAT TAATAGGGAAGAAGCTTATTGAGTTAGATCCAGAGCATGATGGTAGATACGTTGGCCTGTCAAATGTTTATGCCATTGGCAGACGCTGGGATGAAGCAAG AATCATGAGAGAAGCCATGGAGCGTAGAGGGGTGAAGAAGACTCCTGGGTATAGTTTTCTCGAGATGTCTGGAGCTCATCATAGATTCATTGCACATGAT AAATCACATCCTAGCTCAGAGCAAATTTATACAATGCTAAGTTTTATTGTAAGCCAAATGCAATTTGGTGTTCTTAAGGAAGGTCAAGAACACTGTTTGT ATGGTATAGAGGGTATTTGA
AA sequence Show only first row Show all	>Potri.007G073100.1 pacid=42766688 polypeptide=Potri.007G073100.1.p locus=Potri.007G073100 ID=Potri.007G073100.1.v4.1 annot-version=v4.1 MLPRNPNLNLKRTLITFLDKCKSMLQLNQLHALVITFGLSQDDLFMSRIVSFSALSDSNNTDYSYRALLNLQDPTIFEWNSVIRGYSKSKNPNKSISVFV KMLQVGIYPDHLTYPFLAKATSRLLRKELGVSIHGHVIKSGFEIDRFVANSLIHMYGSCGDIVYARKVFDGTPVKNLVSWNSMVDGYAKCGYLDLARGLF DLMPERDVRSWSCLIDGYAKSGNYGDAMAVFEKMRTSGPKANEVTMVSVLCACAHLGALDKGRMMHQYLVDNGFELNLVLRTSLIDMYAKCGAVEEAFAV FRGVSLRKSDVLIWNAMIGGLATHGLVKESLDLYTEMQIAGIKPDEITFLCLLSACAHGGLVKQASYVFEGLGKNGMTPKTEHYACMVDVMARAGQVAEA YQFLCQMPLEPTASMLGALLSGCMNHGKLDLAELIGKKLIELDPEHDGRYVGLSNVYAIGRRWDEARIMREAMERRGVKKTPGYSFLEMSGAHHRFIAHD KSHPSSEQIYTMLSFIVSQMQFGVLKEGQEHCLYGIEGI

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G08305			Pentatricopeptide repeat (PPR)...		Potri.007G073100 [exp]	0	1
AT2G26550		HO2	heme oxygenase 2 (.1.2.3)		Potri.014G034200 [exp]	2.82	0.9394
AT3G22690			unknown protein		Potri.006G245300 [exp]	3.74	0.9389
AT5G06540			Pentatricopeptide repeat (PPR)...		Potri.016G065500 [exp]	4.24	0.9351
AT2G15530			RING/U-box superfamily protein...		Potri.011G103301 [exp]	6.24	0.9068
AT1G69350			Tetratricopeptide repeat (TPR)...		Potri.008G093000 [exp]	6.70	0.9230
AT1G71210			Pentatricopeptide repeat (PPR)...		Potri.003G000601 [exp]	7.54	0.8669
					Potri.005G241602 [exp]	9.64	0.8826
AT4G14850		MEF11, LOI1	lovastatin insensitive 1, Pent...		Potri.008G153700 [exp]	9.79	0.8711
AT5G08310			Tetratricopeptide repeat (TPR)...		Potri.005G090600 [exp]	11.83	0.9100
AT1G32583			unknown protein		Potri.010G246900 [exp]	12.96	0.8936

Compare expression of checked genes

Potri.007G073100 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.