Plant FIBer expression Database

Potri.007G074042 [POPLAR]


External link
JGI Phytozome v13PopgenieAspWood                  
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT5G23290 231 / 5e-79 PFD5, PDF5 prefoldin 5 (.1)
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.005G090100
[exp]
298 / 1e-105 AT5G23290 236 / 6e-81 prefoldin 5 (.1)
Flax homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10010176
[exp]
236 / 6e-81 AT5G23290 228 / 4e-78 prefoldin 5 (.1)
Lus10017381
[exp]
218 / 1e-73 AT5G23290 211 / 6e-71 prefoldin 5 (.1)
PFAM info
Clan ID Clan name Pfam ID Pfam name Pfam description
CL0200 Prefoldin PF02996 Prefoldin Prefoldin subunit
Representative CDS sequence
>Potri.007G074042.1 pacid=42765370 polypeptide=Potri.007G074042.1.p locus=Potri.007G074042 ID=Potri.007G074042.1.v4.1 annot-version=v4.1
ATGGCTTCGTCAAAAGGAGTAGCCACCAGTCCAGCGGCGGCGAGAGCATCAGATATGGAGAAAATGAGTATAGAACAACTAAAAGCAGTAAAAGAACAAA
CAGATCTTGAATTCAATCTCTTACAAGACAGTCTTAACAACATTAAAACAGCCACTGGTCGTCTTGAAGTCGCCGCCACTTCACTTAATGATCTCGCTCT
CCGTCCCCAAGGAAAGAAGATGTTGGTGCCATTAACTGCTTCACTTTATGTACCTGGTACACTTGATGATGCTGATAGAGTTCTTGTTGATATTGGTACT
GGATATTTTGTTGAGAAAACAATGAATGAAGGGAAAGATTATTGCGAGCGCAAGATTAACTTGTTGAAGTCTAATTTTGATCAGCTTATTGAGCTTGCAA
CTAAAAAGAAGACTGTAGCAGATGAAGCAGGGGCAATCTTACAGGCAAAGCTGAGGCAGTTGGCTCCTACAACTTAG
AA sequence
>Potri.007G074042.1 pacid=42765370 polypeptide=Potri.007G074042.1.p locus=Potri.007G074042 ID=Potri.007G074042.1.v4.1 annot-version=v4.1
MASSKGVATSPAAARASDMEKMSIEQLKAVKEQTDLEFNLLQDSLNNIKTATGRLEVAATSLNDLALRPQGKKMLVPLTASLYVPGTLDDADRVLVDIGT
GYFVEKTMNEGKDYCERKINLLKSNFDQLIELATKKKTVADEAGAILQAKLRQLAPTT

DESeq2's median of ratios [POPLAR]

Mapped by: Order by: Show schematic diagram

Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol NWA:WTNWB:WTNWA:OE-ARK2NWB:OE-ARK2NWA:miRNA-ARK2NWB:miRNA-ARK2NW 0hrWT H20WT-NWTUA1dEY NWTUA1dEY+TUB15 NWTUA1dY+TUB9 NWPde NWNWA:WT GANWBWT GATW:WTTW:WT GANWA:OE-ARK2 GANWB:OE-ARK2 GATW:OE-ARK2TW:OE-ARK2 GANWA:miRNA-ARK2 GANWB:miRNA-ARK2 GATW:miRNA-ARK2TW:miRNA-ARK2 GATW 2hrTW 8hrTW 24hrTW 48hrTW 96hrTW 336hrWT ACC35S::etr1-1 H2035S::etr1-1 ACCLMX5::etr1-1 H20LMX5::etr1-1 ACCWT-TWTUA1dEY TWTUA1dEY+TUB15 TWTUA1dY+TUB9 TWPde TWOW:WTOW:WT GAOW:OE-ARK2OW:OE-ARK2 GAOW:miRNA-ARK2OW:miRNA-ARK2 GAOW 2hrOW 8hrOW 24hrOW 48hrOW 96hrOW 336hrRoot CTRRoot LongColdRoot LongDrougtRoot LongHeatRoot LongSaltRoot ShortColdRoot ShortDrougtRoot ShortHeatRoot ShortSaltPtr rootLeaf CTRLeaf LongColdLeaf LongDrougtLeaf LongHeatLeaf LongSaltLeaf ShortColdLeaf ShortDrougtLeaf ShortHeatLeaf ShortSaltPtr leafStem CTRStem LongColdStem LongDrougtStem LongHeatStem LongSaltStem ShortColdStem ShortDrougtStem ShortHeatStem ShortSaltPtr shootPtr xylemPtr phloemPtr fiberPtr vesselPtr fiber vessel ray
AT5G23290 PFD5, PDF5 prefoldin 5 (.1) Potri.007G074042
[exp]
0 1
AT3G52580 Ribosomal protein S11 family p... Potri.011G080500
[exp]
6.70 0.8592 Pt-RPS14.3
AT3G04400 EMB2171 embryo defective 2171, Ribosom... Potri.010G066400
[exp]
6.78 0.8653 Pt-RPL23.6
AT3G49010 RSU2, ATBBC1 40S RIBOSOMAL PROTEIN, breast ... Potri.001G131000
[exp]
7.87 0.8655 ATBBC1.2
AT5G45775 Ribosomal L5P family protein (... Potri.006G181501
[exp]
9.38 0.8457
AT4G00100 PFL2, ATRPS13A POINTED FIRST LEAF 2, ribosoma... Potri.015G130000
[exp]
16.06 0.8520 RPS13.4
AT3G07590 Small nuclear ribonucleoprotei... Potri.002G054800
[exp]
17.34 0.7992
AT4G33865 Ribosomal protein S14p/S29e fa... Potri.009G090000
[exp]
22.58 0.8283
AT2G39390 Ribosomal L29 family protein ... Potri.010G212300
[exp]
23.87 0.8528 RPL35.2
AT5G42970 FUS4, EMB134, C... FUSCA 8, FUSCA 4, EMBRYO DEFEC... Potri.014G180800
[exp]
25.09 0.7713
AT1G57860 Translation protein SH3-like f... Potri.006G195400
[exp]
26.85 0.8478

Potri.007G074042 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.