Plant FIBer expression Database

Potri.007G074056 [POPLAR]


External link
JGI Phytozome v13PopgenieAspWood                  
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT5G04190 102 / 2e-23 PKS4 phytochrome kinase substrate 4 (.1)
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.005G090000
[exp]
799 / 0 AT5G04190 75 / 3e-14 phytochrome kinase substrate 4 (.1)
Flax homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10040995
[exp]
288 / 1e-90 AT5G04190 117 / 2e-28 phytochrome kinase substrate 4 (.1)
Lus10013442
[exp]
159 / 2e-44 AT5G04190 67 / 2e-12 phytochrome kinase substrate 4 (.1)
PFAM info
Representative CDS sequence
>Potri.007G074056.1 pacid=42766215 polypeptide=Potri.007G074056.1.p locus=Potri.007G074056 ID=Potri.007G074056.1.v4.1 annot-version=v4.1
ATGAAAACTATTGCCGCGGGAAGCATAGCTCCACAGCCAATTTTTGACATCATTGAACCCACTCATCCTTACATTTCTTATCCACAAAAATCAACTGTTA
GAGATGCATCCTTTTCTTCTTATCTCAGACCGACGCCAGAACAGCTTAATCGAGTTGATGATTCTGAGATATGCATTTTTGATGCGCAGAGTTATTACTT
CAACGAAGGTGGCAGCTGTGATCCCAAATTGAACAAGAGAGTTTCTCCAGTTACTAATCTTGAACGCCTATCCGAGCGATATGATTTCTCTTCGGTTCCT
AGATTCTCTTCTGCTTCATCTTCTGTTGTGGATGGATATGGTAGGAATTATAGAGCTCGCTCTTTCCACGCAACGCCAACAGCTTCATCTGAAGCTAGTT
GGAATAGCCAGACTGGCTTATTGTCGAATCCACCTGGTGCTATCGCTGTCTCGATGCGAAATCCACCCCGAAACGATGACAAGAAAAAGGGGTGCGGCAC
AAAATGGCTTCTTGGGAGAAAATGTCCATGTTCAGGTAAGAAATCTGTTCAAATTGAGGAAAAGCTATCAGAAGCAAGAACCCCATCGCGGATAAGCCAC
ACTAGAGTCTCTTCGGATCTCAAAAAGAAGATTCAGAATCAAATTCGTACCACTGTAGAAAATCCTATTGAAAAAAGTTTGGCTGCACCGGACTGGCTCG
AAAGGCGTGAAGTAATTCCTAGCACTCATAGAATCTCATCAGACAACAAGCTCGAAAGACGTGAAGTGATTCCTAATTCTCATCGAATCTCAGCAGACAA
CAACCGATTCCCTTCAAGCTTAAGCCACCAACTTGTAGTGGCCTCAGCAAGACCATTCAGTACTGATACTACTGCTGGGTTCAGTTTTCCTGTACAGAGC
CAAACCCCGCCTCCTACAAAACTGGTGCTGCCATCAGCTACTTATAACCCTCTTCTTGAGGATCCACCTCGCCATTCGTTGGAAGTTTTTCGGCCAGCTG
ATGATCCTATTCCAACCAAGTCAATTTCTGATCTTCACCGACGTCAAAGCTTCACAGTCATAGATGATGACATGGCAAGTGATGCAAGTTCAGACCTGTT
TGAGATCGAGAGCTTCTCAACTCAAACAACATCATATGCAATGTGTCCTAATCTTCGTGATTCTCTTGATGATGCTTCAAGCTTTAACGCAAGGCGATTA
GCTGCAACCAATGGAGGGATTTTGTATTGTAGACGAAGTCTTGATGATCCTAGAACACCATCAGTTGCAGCAACAGAATGTTATGAGCCAAGCGAGGCTA
GCATAGACTGGAGTGTGACAACAGCAGAAGGCTTTGACAGAGGAAGTGTTACAAACTTCTCAGTTAGTGCATCAGAAGTTGATGAAATGACAATGATGCG
CGGCGGCGGGGGAGCAGGGAAGAAGAGAGGAGGGAATGGAGGGTTGTTGATGAGCTGTAGGTGTGAGAAGGCAGTAAGTGTGGGGCCACATCCGGTAAAA
TGTGTGGCTACAGAGGGACAAAGAGTAGTGAGTTCCACACAGAGGCATGTGGGAAGTAGGGCAGCTATTAAGAACAAACCACCACTAGCTAGCTAG
AA sequence
>Potri.007G074056.1 pacid=42766215 polypeptide=Potri.007G074056.1.p locus=Potri.007G074056 ID=Potri.007G074056.1.v4.1 annot-version=v4.1
MKTIAAGSIAPQPIFDIIEPTHPYISYPQKSTVRDASFSSYLRPTPEQLNRVDDSEICIFDAQSYYFNEGGSCDPKLNKRVSPVTNLERLSERYDFSSVP
RFSSASSSVVDGYGRNYRARSFHATPTASSEASWNSQTGLLSNPPGAIAVSMRNPPRNDDKKKGCGTKWLLGRKCPCSGKKSVQIEEKLSEARTPSRISH
TRVSSDLKKKIQNQIRTTVENPIEKSLAAPDWLERREVIPSTHRISSDNKLERREVIPNSHRISADNNRFPSSLSHQLVVASARPFSTDTTAGFSFPVQS
QTPPPTKLVLPSATYNPLLEDPPRHSLEVFRPADDPIPTKSISDLHRRQSFTVIDDDMASDASSDLFEIESFSTQTTSYAMCPNLRDSLDDASSFNARRL
AATNGGILYCRRSLDDPRTPSVAATECYEPSEASIDWSVTTAEGFDRGSVTNFSVSASEVDEMTMMRGGGGAGKKRGGNGGLLMSCRCEKAVSVGPHPVK
CVATEGQRVVSSTQRHVGSRAAIKNKPPLAS

DESeq2's median of ratios [POPLAR]

Mapped by: Order by: Show schematic diagram

Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol NWA:WTNWB:WTNWA:OE-ARK2NWB:OE-ARK2NWA:miRNA-ARK2NWB:miRNA-ARK2NW 0hrWT H20WT-NWTUA1dEY NWTUA1dEY+TUB15 NWTUA1dY+TUB9 NWPde NWNWA:WT GANWBWT GATW:WTTW:WT GANWA:OE-ARK2 GANWB:OE-ARK2 GATW:OE-ARK2TW:OE-ARK2 GANWA:miRNA-ARK2 GANWB:miRNA-ARK2 GATW:miRNA-ARK2TW:miRNA-ARK2 GATW 2hrTW 8hrTW 24hrTW 48hrTW 96hrTW 336hrWT ACC35S::etr1-1 H2035S::etr1-1 ACCLMX5::etr1-1 H20LMX5::etr1-1 ACCWT-TWTUA1dEY TWTUA1dEY+TUB15 TWTUA1dY+TUB9 TWPde TWOW:WTOW:WT GAOW:OE-ARK2OW:OE-ARK2 GAOW:miRNA-ARK2OW:miRNA-ARK2 GAOW 2hrOW 8hrOW 24hrOW 48hrOW 96hrOW 336hrRoot CTRRoot LongColdRoot LongDrougtRoot LongHeatRoot LongSaltRoot ShortColdRoot ShortDrougtRoot ShortHeatRoot ShortSaltPtr rootLeaf CTRLeaf LongColdLeaf LongDrougtLeaf LongHeatLeaf LongSaltLeaf ShortColdLeaf ShortDrougtLeaf ShortHeatLeaf ShortSaltPtr leafStem CTRStem LongColdStem LongDrougtStem LongHeatStem LongSaltStem ShortColdStem ShortDrougtStem ShortHeatStem ShortSaltPtr shootPtr xylemPtr phloemPtr fiberPtr vesselPtr fiber vessel ray
AT5G04190 PKS4 phytochrome kinase substrate 4... Potri.007G074056
[exp]
0 1
AT4G31980 unknown protein Potri.013G146300
[exp]
1.00 0.9581
AT1G01110 IQD18 IQ-domain 18 (.1.2) Potri.012G022500
[exp]
3.46 0.9411
AT2G30370 EPFL6, CHAL EPF1-like 6, CHALLAH, allergen... Potri.013G155500
[exp]
7.48 0.9353
AT2G44480 BGLU17 beta glucosidase 17 (.1.2) Potri.001G227400
[exp]
7.54 0.9363
AT2G46810 bHLH bHLH070 basic helix-loop-helix (bHLH) ... Potri.014G106300
[exp]
8.36 0.9185
AT2G44480 BGLU17 beta glucosidase 17 (.1.2) Potri.001G227300
[exp]
10.24 0.9289
AT2G27240 Aluminium activated malate tra... Potri.001G217200
[exp]
12.12 0.9231
AT5G09970 CYP78A7 "cytochrome P450, family 78, s... Potri.005G084500
[exp]
12.36 0.9201
AT1G14760 KNATM KNOX Arabidopsis thaliana mein... Potri.012G043400
[exp]
14.14 0.9023
AT4G21750 HD ATML1 MERISTEM LAYER 1, Homeobox-leu... Potri.011G025000
[exp]
14.28 0.9236 Pt-ATML1.1

Potri.007G074056 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.