Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G05460 212 / 6e-58 SDE3 SILENCING DEFECTIVE, P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.005G089800 [exp] 756 / 0 AT1G05460 214 / 3e-58 SILENCING DEFECTIVE, P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) Potri.008G155400 [exp] 229 / 2e-64 AT1G05460 1127 / 0.0 SILENCING DEFECTIVE, P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) Potri.005G047500 [exp] 218 / 1e-60 AT1G05460 1051 / 0.0 SILENCING DEFECTIVE, P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10017379 [exp] 457 / 8e-153 AT1G05460 212 / 2e-58 SILENCING DEFECTIVE, P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) Lus10010175 [exp] 457 / 1e-152 AT1G05460 226 / 4e-63 SILENCING DEFECTIVE, P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) Lus10010577 [exp] 124 / 2e-29 AT1G05460 610 / 0.0 SILENCING DEFECTIVE, P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1)
PFAM info
Representative CDS sequence Show only first row Show all	>Potri.007G074070.1 pacid=42764949 polypeptide=Potri.007G074070.1.p locus=Potri.007G074070 ID=Potri.007G074070.1.v4.1 annot-version=v4.1 ATGTTGTCTGGGTGTCTTGAATTCTTAAAGTGTGTGCTTTGTTGTGTAGAAGAACATGAAGAAGATCTCCTTGAAGTGCTAGGTTCAAGGTCAACAAGTA ATTCATTAGATGTTGGATCAAGATTCACTAGGTCTGTGGGAAGAGTCTCTGATAGACTTCTGGGTTCCAATAATTACACATATGCACCTATATATTCCTG TGATCCACCTACATCGTCCCCTGCAGTACCTCAATCTTCATCAAGATTTCTCTCACCTTCTTCAATTCCAACACCTTCATGGCCTAATCCTCCAACATCA TCTTCTAACCAACCTCGATCCTTACATATACCGGCAACATTTTCTTCTAGACCCTCTCCACCTGCACCTGCACCTTCAACAACTTCGTCGAATGCATCCC CTCAAGCTACAACGTTGTCATTCACATCATCTCCATTTCCACCTCCACTTTCAGCTTCTTCATCAAAATCATCCCATAAAACTCATCCTACTGCTTTCCA TCCATCTCCGTCTCCCAAACCACTCCCACCATTCCTTAAACCAGGATCTTCATCTTCTAAACCTTCTCCATCTTCGCCTAAAGCATCCACATCTTCCCCA GGACCATCTTCATCATCCTCTAAACAGCCCCCATCCTTCAAACCAACTCTGTCTCAGGTTTCCCCAGATTCAATTAAGGAGCAGACAAAGGTCAGCTACA TGTGGGTTCAAAAGGGTATGTCACCTATATATGCGATTCCTAAGGATATTGAGGACTTGATCAAGAGAGACAAGGTGCCTGGAGTTCTTAATAAACCGCT GTCTCTTTCGACATACAAGGATTATTTTGCAGCACTTCTGTATGCCGAAGACTTCTACATTGAGAAATGGAGTGAATTTAAATTGGAGAATATTACTCTC AAGTTGCAACGTGCAGAAATCATTAAGAAGTCACGCAGGAATGAATACCGCAATGAAACTTATGAGAAGGATGATAAGATCTTTGTAGAATTTGAGATTG ACTCTTGTTGTGAGAGGCGGCCGTTTCTTTTGTCCAGAGACTTTGCCTTTGCACGACCTTCAGGTCAAATGACCGAGCCATGTCAGGGTATTATATATCG TGTGGAGAGGAGCACTCGTGTAGTGGTTGAATTTGGTAAAGATTTTCTTTTGCAGCATCATTCAACCCGTAAATATGATGTTAGCTTCTCATTTAACAGA GTTTGTTTGAAAAGGGCTCACCACGCAATTGAAGCGGCTTCAGATCCTTTATTTAAAAGTTTTCTTTTCCCTGATGGTGTCTCCAAAAAGATATTCCCAA TCTCTACACCTCTCCACTTTTGCAATCATAAACTTGATGTGTATCAAAGCTCTGCAGTTCGTGAGATTTTGAGCTTCCAAGGACCACCGCCTTATATTGT TGAAGGTCCACTCTGTTTAAACAAGTTTTCAGAACTATCAAGGACTGGATTGGTAATCCAGGAAGCAGTGCTCCAAATTTATCAAAGCTCGTCAAAGCTT CGGATTCTTATATGTGCACCCATTAACAGAACATGTGATTTGCTGATGCAAAGCTTAAACAATGACATTCCAAAGTCAGATATGTTTCGAGCAAATGCTA CTTTTCGAGAGATAGATGGGGTACCTATTGACATCCTACCATCGTGTGCTTACAAAGGGGAGTGTTTTACGTGTCCATCTCTTCAGGAGCTCCGGAAATT TAGAGTAATCTTGTCTACTTTTGTTAGTAGCTTTCGGCTGCGTAATGAAGGGATAGCTGCTGGTCATTTTAGTCATATTTTTTTGGTTGATGCTTCATCA GCTACTGAGCCAGAAGCAATGGTGCCTCTGGCTAATTTGGCTAGTGAGGAGACAGCAGTGATAGTTACTGGTGCACCAGGAAACCATTCAGGCTGGGTTC GCTCCAACATTGCAAGGAAGAATGGACTAATGACATCCTACTTTGAAAGACTTCGCCATAGCAAGCCATACCGGAGTTTACTTCCAAAGTTTATCACACA GCTGGCTGATCCCCAGAAAGAATCAGTTGGTGATTATAGCTATGCATCTGTATCTTATGACTAA
AA sequence Show only first row Show all	>Potri.007G074070.1 pacid=42764949 polypeptide=Potri.007G074070.1.p locus=Potri.007G074070 ID=Potri.007G074070.1.v4.1 annot-version=v4.1 MLSGCLEFLKCVLCCVEEHEEDLLEVLGSRSTSNSLDVGSRFTRSVGRVSDRLLGSNNYTYAPIYSCDPPTSSPAVPQSSSRFLSPSSIPTPSWPNPPTS SSNQPRSLHIPATFSSRPSPPAPAPSTTSSNASPQATTLSFTSSPFPPPLSASSSKSSHKTHPTAFHPSPSPKPLPPFLKPGSSSSKPSPSSPKASTSSP GPSSSSSKQPPSFKPTLSQVSPDSIKEQTKVSYMWVQKGMSPIYAIPKDIEDLIKRDKVPGVLNKPLSLSTYKDYFAALLYAEDFYIEKWSEFKLENITL KLQRAEIIKKSRRNEYRNETYEKDDKIFVEFEIDSCCERRPFLLSRDFAFARPSGQMTEPCQGIIYRVERSTRVVVEFGKDFLLQHHSTRKYDVSFSFNR VCLKRAHHAIEAASDPLFKSFLFPDGVSKKIFPISTPLHFCNHKLDVYQSSAVREILSFQGPPPYIVEGPLCLNKFSELSRTGLVIQEAVLQIYQSSSKL RILICAPINRTCDLLMQSLNNDIPKSDMFRANATFREIDGVPIDILPSCAYKGECFTCPSLQELRKFRVILSTFVSSFRLRNEGIAAGHFSHIFLVDASS ATEPEAMVPLANLASEETAVIVTGAPGNHSGWVRSNIARKNGLMTSYFERLRHSKPYRSLLPKFITQLADPQKESVGDYSYASVSYD

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G05460		SDE3	SILENCING DEFECTIVE, P-loop co...		Potri.007G074070 [exp]	0	1
AT3G20830			AGC (cAMP-dependent, cGMP-depe...		Potri.003G205800 [exp]	3.46	0.8227
AT3G11660		NHL1	NDR1/HIN1-like 1 (.1)		Potri.006G204200 [exp]	21.95	0.6937
AT2G22540	MADS	AGL22, SVP	SHORT VEGETATIVE PHASE, AGAMOU...		Potri.007G115200 [exp]	29.91	0.8135	MADS1.5
AT5G08640		ATFLS1, FLS	flavonol synthase 1 (.1.2)		Potri.002G086700 [exp]	39.86	0.8064
AT3G05950			RmlC-like cupins superfamily p...		Potri.019G026200 [exp]	41.55	0.8039
AT4G14860	OFP	ATOFP11	ovate family protein 11 (.1)		Potri.010G087200 [exp]	47.85	0.8041
AT2G36470			Plant protein of unknown funct...		Potri.004G098000 [exp]	53.47	0.7889
AT2G02820	MYB	ATMYB88	myb domain protein 88 (.1.2)		Potri.010G093000 [exp]	56.54	0.7877	MYB124.2,MYB196
AT3G23290		LSH4	LIGHT SENSITIVE HYPOCOTYLS 4, ...		Potri.011G156600 [exp]	56.92	0.7901
AT1G68360	C2H2ZnF		C2H2 and C2HC zinc fingers sup...		Potri.010G122400 [exp]	62.38	0.8001

Compare expression of checked genes

Potri.007G074070 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.