Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G11270 83 / 1e-17 F-box and associated interaction domains-containing protein (.1.2.3) AT5G49610 81 / 8e-17 F-box family protein (.1) AT3G06240 81 / 1e-16 F-box family protein (.1) AT3G07870 80 / 3e-16 F-box and associated interaction domains-containing protein (.1) AT2G02030 79 / 4e-16 F-box family protein (.1) AT3G16590 79 / 8e-16 F-box and associated interaction domains-containing protein (.1) AT4G38870 73 / 8e-14 F-box and associated interaction domains-containing protein (.1) AT1G12870 70 / 5e-13 F-box and associated interaction domains-containing protein (.1) AT2G16220 70 / 5e-13 F-box and associated interaction domains-containing protein (.1) AT2G15640 70 / 9e-13 F-box family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G223000 [exp] 107 / 1e-25 AT3G07870 467 / 5e-164 F-box and associated interaction domains-containing protein (.1) Potri.001G224200 [exp] 100 / 3e-23 AT3G07870 105 / 4e-25 F-box and associated interaction domains-containing protein (.1) Potri.001G458400 [exp] 96 / 1e-21 AT2G31470 113 / 8e-28 DROUGHT TOLERANCE REPRESSOR, F-box and associated interaction domains-containing protein (.1) Potri.014G162600 [exp] 96 / 1e-21 AT3G07870 467 / 9e-164 F-box and associated interaction domains-containing protein (.1) Potri.001G318300 [exp] 94 / 6e-21 AT3G06240 140 / 7e-38 F-box family protein (.1) Potri.011G137200 [exp] 93 / 1e-20 AT3G07870 94 / 1e-20 F-box and associated interaction domains-containing protein (.1) Potri.001G035500 [exp] 89 / 3e-19 AT4G12560 271 / 3e-87 CONSTITUTIVE EXPRESSER OF PR GENES 30, CONSTITUTIVE EXPRESSER OF PR GENES 1, F-box and associated interaction domains-containing protein (.1.2) Potri.016G012700 [exp] 88 / 5e-19 AT4G12560 143 / 3e-38 CONSTITUTIVE EXPRESSER OF PR GENES 30, CONSTITUTIVE EXPRESSER OF PR GENES 1, F-box and associated interaction domains-containing protein (.1.2) Potri.001G396800 [exp] 87 / 2e-18 AT3G07870 99 / 2e-22 F-box and associated interaction domains-containing protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10007277 [exp] 83 / 5e-17 AT3G04660 82 / 6e-17 F-box and associated interaction domains-containing protein (.1) Lus10007285 [exp] 83 / 5e-17 AT3G04660 82 / 7e-17 F-box and associated interaction domains-containing protein (.1) Lus10016866 [exp] 83 / 5e-17 AT1G32420 84 / 2e-17 F-box and associated interaction domains-containing protein (.1) Lus10012358 [exp] 82 / 1e-16 AT3G07870 181 / 3e-52 F-box and associated interaction domains-containing protein (.1) Lus10018106 [exp] 81 / 2e-16 AT3G06240 95 / 3e-21 F-box family protein (.1) Lus10037802 [exp] 80 / 3e-16 AT5G49610 497 / 1e-177 F-box family protein (.1) Lus10029699 [exp] 80 / 4e-16 AT1G12855 71 / 5e-13 F-box family protein (.1) Lus10017086 [exp] 78 / 2e-15 AT5G49610 500 / 7e-179 F-box family protein (.1) Lus10018008 [exp] 77 / 4e-15 AT3G16210 82 / 6e-17 F-box family protein (.1) Lus10042738 [exp] 76 / 6e-15 AT1G12855 73 / 1e-13 F-box family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0271 [poplar] [flax] F-box PF00646 [poplar] [flax] F-box F-box domain
Representative CDS sequence Show only first row Show all	>Potri.007G074084.1 pacid=42766407 polypeptide=Potri.007G074084.1.p locus=Potri.007G074084 ID=Potri.007G074084.1.v4.1 annot-version=v4.1 ATGAAGTCGAAGAGAAGACGTGTGAACAATTACAATGATGATGCACAAGGGGAAGCCATTTTGCCGCCTGAGATGTTTTGTGAGGTTTTGGCAAGACTTC CCGTGGAATCAATTCTTAGATTTAGAAGTGTTTGTAAGAGTTGGTGTAGGATGATCCAAAGTCCATACTTCATCAGCTTGCAACTGGGTGTGACAAAGAA TAAACCATGTCGGTTTATTGTCCAATCACAGCGCGAAGGTGATATGAGCAGCCTATATTTAGTTGATATCGAGGATCTTAAGGCTAGGGAGATTCAACTT GAGAAAATCAAGTGCCGCACTCGTCTAAAGTTTAAGCTGCCTGCCCTTGGAGTTAGATGTTTTTGCGATGGATTTCTCTGCATGGCTTCAGAAAAAAGGC TAGATCCTGTCTGTATATGCAATCCAATAACAAAAGAGAGTGTGATATTACCATTATCCAGGTCAAAAGCACATCTCGTCCGTCATAAGCTTGCTTTTGG CTTTGATCAGTCATCAGGCAAGTACAAAGTTATTCGAGACTATAGAACTAGCAGCAATAAGCATCTCAGCAAGTTCCAGATAATTACTCTTGGAGAAAGT TCGTGGAGACAGTTGAATCCCCCACAAAATCTATGCACATCTGATTGGGATGCTGCAGTGTTTTGGAATGGATCTCTCCACTGGATAATAGATGATAAAA CTATCGATGAACCTATTCTTGCATTTGATCTAAGCAGTGAGACGTTCTATACCATTCCTTTTCATAGGTTGTGCCTTTCTCACGAATGTTATGAGTTACA GGTCTTGGGGGCATCTTTAACTATAGTGGAACATAACAGTCATATGATTAAAATTTGGGAAGTAGCTGGGAACAAGGTCAAAGGATTTTCTGCCAACTGT AGAGAGGAGCATGATACATATGTATGTTGGAACAAGTACTTGTTCTATAAAACAATTTCTCAGCTTAGCCACAAGAGTTTCATGTTACAGGTATGCTTTA TAGATAACAAAAATGTCAAAAAGGATTGGTTTACTCGTTTTGTCCCTGAAAAGGCGCAGTACTTCCACCAAGACATCCTTGGCCTTCCTGAGCATTTCAA CACCGATCATTTCAAGCCCTCCTTTGTCTCGCCTAATGCACTCCTTTCAGTTCAAAGTCAGCTTCCTGTGTTAAAGAGCTCATAA
AA sequence Show only first row Show all	>Potri.007G074084.1 pacid=42766407 polypeptide=Potri.007G074084.1.p locus=Potri.007G074084 ID=Potri.007G074084.1.v4.1 annot-version=v4.1 MKSKRRRVNNYNDDAQGEAILPPEMFCEVLARLPVESILRFRSVCKSWCRMIQSPYFISLQLGVTKNKPCRFIVQSQREGDMSSLYLVDIEDLKAREIQL EKIKCRTRLKFKLPALGVRCFCDGFLCMASEKRLDPVCICNPITKESVILPLSRSKAHLVRHKLAFGFDQSSGKYKVIRDYRTSSNKHLSKFQIITLGES SWRQLNPPQNLCTSDWDAAVFWNGSLHWIIDDKTIDEPILAFDLSSETFYTIPFHRLCLSHECYELQVLGASLTIVEHNSHMIKIWEVAGNKVKGFSANC REEHDTYVCWNKYLFYKTISQLSHKSFMLQVCFIDNKNVKKDWFTRFVPEKAQYFHQDILGLPEHFNTDHFKPSFVSPNALLSVQSQLPVLKSS

---

DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G11270			F-box and associated interacti...		Potri.007G074084 [exp]	0	1
AT4G06676			unknown protein		Potri.004G222300 [exp]	5.09	0.7249
AT1G76460			RNA-binding (RRM/RBD/RNP motif...		Potri.005G256700 [exp]	8.12	0.6993
AT3G20020		ATPRMT6	ARABIDOPSIS THALIANA PROTEIN A...		Potri.014G004000 [exp]	11.18	0.7461
AT1G15740			Leucine-rich repeat family pro...		Potri.006G061700 [exp]	13.71	0.7050
AT3G02070			Cysteine proteinases superfami...		Potri.014G140200 [exp]	17.60	0.6861
AT2G18410			unknown protein		Potri.017G115566 [exp]	18.97	0.7158
AT2G17020			F-box/RNI-like superfamily pro...		Potri.009G139500 [exp]	19.77	0.6679
AT5G58190		ECT10	evolutionarily conserved C-ter...		Potri.018G149800 [exp]	21.84	0.6878
AT2G37150			RING/U-box superfamily protein...		Potri.010G220700 [exp]	35.72	0.6331
AT1G62930		RPF3	RNA processing factor 3, Tetra...		Potri.013G150100 [exp]	41.78	0.6673

Compare expression of checked genes

Potri.007G074084 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.