Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G26300 342 / 1e-112 CYP71B34 "cytochrome P450, family 71, subfamily B, polypeptide 34", cytochrome P450, family 71, subfamily B, polypeptide 34 (.1) AT5G25120 328 / 6e-107 CYP71B11 "ytochrome p450, family 71, subfamily B, polypeptide 11", ytochrome p450, family 71, subfamily B, polypeptide 11 (.1) AT5G25130 322 / 9e-105 CYP71B12 "cytochrome P450, family 71, subfamily B, polypeptide 12", cytochrome P450, family 71, subfamily B, polypeptide 12 (.1) AT3G26280 322 / 1e-104 CYP71B4 "cytochrome P450, family 71, subfamily B, polypeptide 4", cytochrome P450, family 71, subfamily B, polypeptide 4 (.1) AT3G26330 321 / 3e-104 CYP71B37 "cytochrome P450, family 71, subfamily B, polypeptide 37", cytochrome P450, family 71, subfamily B, polypeptide 37 (.1) AT3G26310 320 / 4e-104 CYP71B35 "cytochrome P450, family 71, subfamily B, polypeptide 35", cytochrome P450, family 71, subfamily B, polypeptide 35 (.1) AT1G13080 320 / 4e-104 CYP71B2 "cytochrome P450, family 71, subfamily B, polypeptide 2", cytochrome P450, family 71, subfamily B, polypeptide 2 (.1.2) AT3G48270 317 / 8e-103 CYP71A26 "cytochrome P450, family 71, subfamily A, polypeptide 26", cytochrome P450, family 71, subfamily A, polypeptide 26 (.1) AT3G48280 314 / 8e-102 CYP71A25 "cytochrome P450, family 71, subfamily A, polypeptide 25", cytochrome P450, family 71, subfamily A, polypeptide 25 (.1) AT3G26210 314 / 1e-101 CYP71B23 "cytochrome P450, family 71, subfamily B, polypeptide 23", cytochrome P450, family 71, subfamily B, polypeptide 23 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.007G075000 [exp] 706 / 0 AT3G26300 386 / 2e-129 "cytochrome P450, family 71, subfamily B, polypeptide 34", cytochrome P450, family 71, subfamily B, polypeptide 34 (.1) Potri.007G074900 [exp] 706 / 0 AT3G26300 383 / 3e-128 "cytochrome P450, family 71, subfamily B, polypeptide 34", cytochrome P450, family 71, subfamily B, polypeptide 34 (.1) Potri.007G074850 [exp] 702 / 0 AT3G26300 379 / 1e-126 "cytochrome P450, family 71, subfamily B, polypeptide 34", cytochrome P450, family 71, subfamily B, polypeptide 34 (.1) Potri.011G130800 [exp] 617 / 0 AT3G26300 359 / 4e-119 "cytochrome P450, family 71, subfamily B, polypeptide 34", cytochrome P450, family 71, subfamily B, polypeptide 34 (.1) Potri.011G130850 [exp] 615 / 0 AT3G26300 361 / 5e-120 "cytochrome P450, family 71, subfamily B, polypeptide 34", cytochrome P450, family 71, subfamily B, polypeptide 34 (.1) Potri.001G364600 [exp] 494 / 6e-172 AT5G25120 352 / 2e-116 "ytochrome p450, family 71, subfamily B, polypeptide 11", ytochrome p450, family 71, subfamily B, polypeptide 11 (.1) Potri.001G365100 [exp] 492 / 4e-171 AT3G26300 347 / 2e-114 "cytochrome P450, family 71, subfamily B, polypeptide 34", cytochrome P450, family 71, subfamily B, polypeptide 34 (.1) Potri.008G223500 [exp] 487 / 3e-169 AT3G26300 395 / 3e-133 "cytochrome P450, family 71, subfamily B, polypeptide 34", cytochrome P450, family 71, subfamily B, polypeptide 34 (.1) Potri.015G094900 [exp] 448 / 2e-154 AT1G13110 268 / 4e-84 "cytochrome P450, family 71 subfamily B, polypeptide 7", cytochrome P450, family 71 subfamily B, polypeptide 7 (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10016601 [exp] 494 / 2e-171 AT3G26320 402 / 6e-136 "cytochrome P450, family 71, subfamily B, polypeptide 36", cytochrome P450, family 71, subfamily B, polypeptide 36 (.1) Lus10040120 [exp] 447 / 4e-153 AT3G48280 377 / 5e-126 "cytochrome P450, family 71, subfamily A, polypeptide 25", cytochrome P450, family 71, subfamily A, polypeptide 25 (.1) Lus10009903 [exp] 446 / 7e-153 AT5G57260 376 / 1e-125 "cytochrome P450, family 71, subfamily B, polypeptide 10", cytochrome P450, family 71, subfamily B, polypeptide 10 (.1) Lus10002885 [exp] 446 / 2e-152 AT3G48280 396 / 2e-133 "cytochrome P450, family 71, subfamily A, polypeptide 25", cytochrome P450, family 71, subfamily A, polypeptide 25 (.1) Lus10019157 [exp] 444 / 3e-152 AT3G48300 358 / 1e-118 "cytochrome P450, family 71, subfamily A, polypeptide 23", cytochrome P450, family 71, subfamily A, polypeptide 23 (.1) Lus10030924 [exp] 437 / 3e-149 AT3G26300 391 / 2e-131 "cytochrome P450, family 71, subfamily B, polypeptide 34", cytochrome P450, family 71, subfamily B, polypeptide 34 (.1) Lus10029035 [exp] 437 / 5e-149 AT1G13110 402 / 1e-135 "cytochrome P450, family 71 subfamily B, polypeptide 7", cytochrome P450, family 71 subfamily B, polypeptide 7 (.1) Lus10030708 [exp] 427 / 1e-145 AT3G26210 390 / 6e-131 "cytochrome P450, family 71, subfamily B, polypeptide 23", cytochrome P450, family 71, subfamily B, polypeptide 23 (.1) Lus10012767 [exp] 427 / 2e-145 AT3G26210 386 / 1e-129 "cytochrome P450, family 71, subfamily B, polypeptide 23", cytochrome P450, family 71, subfamily B, polypeptide 23 (.1) Lus10019159 [exp] 425 / 1e-144 AT3G26330 365 / 1e-121 "cytochrome P450, family 71, subfamily B, polypeptide 37", cytochrome P450, family 71, subfamily B, polypeptide 37 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF00067 [poplar] [flax] p450 Cytochrome P450
Representative CDS sequence Show only first row Show all	>Potri.007G074300.1 pacid=42766127 polypeptide=Potri.007G074300.1.p locus=Potri.007G074300 ID=Potri.007G074300.1.v4.1 annot-version=v4.1 ATGGAATTCCCAATCCTTCTAGCCAGCCTTCTCTTTATCTTTGCTGTATTGAGATTGTGGAAGAAATCGAAAGGCAATGGCTCAACTCTAGCCTTACCTC CAGGACCATGGAAATTACCCCTCATTGGAAACATTCACCAGCTAGCCGGCTCTCTTCCCCATCATTGCCTAACAGACCTGGCCAAGAAATATGGACCCGT CATGCAACTTCAAATTGGAGAAGTCTCAACTGTCGTTGTTTCTTCAGGAGAAGCAGCAAAAGAAGTAATGAAAACACATGAGATCAACTTTGTCGAGAGA CCTTGCCTCCTTGTTGCAAATATCATGTTTTACAATCGCAAGAACATTGGGTTTGCACCATATGGAGACTATTGGAGACAAATGAGGAAAGTTTGCACGT TGGAACTATTTAGTGCAAAACGTGTAAGATCATTCAGATCAGTAAGGGAAGAAGAGGTATCCAATTTTATTAGAAATATTTATGCGAAAGCCGGTTCGCC AATCAACCTTAGCAAAATGATGCTTGACTTATCAAACGGCGTCATTGCAAGAACAAGCATCGGTAAGAAATCCAAAAACCAAGAAGCCTTCTTACCAATC ATTGAAGATGTGGCAGAGGCATTGGCTGGTCTGAATATTGTAGATGTGTTCCCTTCTGCTAAGTTCTTGTACATGATCAGTAAGCTGAGGTCTAGACTCG AAAGGTCGCATATAGAAGCAGATGAGATCCTTGAAAACATTATAAATGAACGTAGAGCCAGCAAGGAAGAGAGAAAGACTGATCAAGACAACGAAGTGGA AGTTCTTCTGGATGTTCTTCTAAATCTACAGAATCAAGGAAACCTTGAATTTCCTTTAACAACAGACAGCATCAAAGCAATCATCGTGGAAATGTTTGGT GCTGGGAGTGAAACAACATCAACACTTTTGGAATGGTCAATGTCAGAAATGTTGAAAAATCCAAGGGTAATGAAAAAGGCACAAGAAGAAGTGAGGCAAG TCTTTAGTGATTCAGAGAATGTTGATGAAACAGGTCTTCAAAATCTGAAATTCTTGAAGCTGATCATCAAAGAAACCCTGAGACTACATCCACCCATTTC TTTGATTCCAAGGGAATGCAGCAAGACATGCGAGATTAATGGATATGTCATACAAGCTAAAAGTAAAGTAATAATCAATGCGTGGGCTATTGGTAGGGAT TCTAATGATTGGACTGAAGCAGAGAAATTCTATCCAGAGAGATTCCAAGATAGTTCAATTGATTACAAGGGTACAAATTTTGAATTTATCCCATTTGGTG CTGGAAAGAGGATGTGCCCTGGCATGCTGTTCGGTATAGGTAATGCTGAGCTTCTGCTTGCACGGCTGCTATACCATTTCGATTGGAAACTTTCCAGTGG AGCAGCTTTAGAAGATCTTGACATGAATGAGGCTTTTGGGGGAACAGTTAAGAAAAAACATTATCTTAACTTGATTCCCATTCCATATGGTCCTTGTCCT TTGCCTGTGGAATGA
AA sequence Show only first row Show all	>Potri.007G074300.1 pacid=42766127 polypeptide=Potri.007G074300.1.p locus=Potri.007G074300 ID=Potri.007G074300.1.v4.1 annot-version=v4.1 MEFPILLASLLFIFAVLRLWKKSKGNGSTLALPPGPWKLPLIGNIHQLAGSLPHHCLTDLAKKYGPVMQLQIGEVSTVVVSSGEAAKEVMKTHEINFVER PCLLVANIMFYNRKNIGFAPYGDYWRQMRKVCTLELFSAKRVRSFRSVREEEVSNFIRNIYAKAGSPINLSKMMLDLSNGVIARTSIGKKSKNQEAFLPI IEDVAEALAGLNIVDVFPSAKFLYMISKLRSRLERSHIEADEILENIINERRASKEERKTDQDNEVEVLLDVLLNLQNQGNLEFPLTTDSIKAIIVEMFG AGSETTSTLLEWSMSEMLKNPRVMKKAQEEVRQVFSDSENVDETGLQNLKFLKLIIKETLRLHPPISLIPRECSKTCEINGYVIQAKSKVIINAWAIGRD SNDWTEAEKFYPERFQDSSIDYKGTNFEFIPFGAGKRMCPGMLFGIGNAELLLARLLYHFDWKLSSGAALEDLDMNEAFGGTVKKKHYLNLIPIPYGPCP LPVE

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT3G26300		CYP71B34	"cytochrome P450, family 71, s...		Potri.007G074300 [exp]	0	1
AT3G01930			Major facilitator superfamily ...		Potri.001G329100 [exp]	24.28	0.8247
AT1G09460			Carbohydrate-binding X8 domain...		Potri.013G003500 [exp]	30.88	0.7863
AT5G55530			Calcium-dependent lipid-bindin...		Potri.001G361100 [exp]	94.65	0.7962
AT4G12690			Plant protein of unknown funct...		Potri.015G084500 [exp]	104.90	0.7806
AT2G34190			Xanthine/uracil permease famil...		Potri.004G058800 [exp]	113.30	0.7672
AT5G27640		ATTIF3B1, ATEIF...	EUKARYOTIC TRANSLATION INITIAT...		Potri.006G267500 [exp]	116.47	0.7683	Pt-EIF3.6
AT2G19480		NFA2, NFA02, NA...	NUCLEOSOME/CHROMATIN ASSEMBLY ...		Potri.003G040250 [exp]	130.36	0.7838
AT3G49810			ARM repeat superfamily protein...		Potri.002G116500 [exp]	140.19	0.7712
AT1G75520		SRS5	SHI-related sequence 5 (.1)		Potri.002G028500 [exp]	142.03	0.7484
AT3G16560			Protein phosphatase 2C family ...		Potri.010G024800 [exp]	231.39	0.7597

Compare expression of checked genes

Potri.007G074300 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.