Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G23960 441 / 6e-150 ATTPS21 terpene synthase 21 (.1.2) AT3G14490 365 / 2e-119 Terpenoid cyclases/Protein prenyltransferases superfamily protein (.1) AT1G33750 351 / 4e-114 AtTPS22 Terpenoid cyclases/Protein prenyltransferases superfamily protein (.1) AT3G14520 350 / 1e-113 AtTPS18 Terpenoid cyclases/Protein prenyltransferases superfamily protein (.1) AT3G14540 349 / 4e-113 Terpenoid cyclases/Protein prenyltransferases superfamily protein (.1) AT1G70080 345 / 9e-112 Terpenoid cyclases/Protein prenyltransferases superfamily protein (.1) AT3G29410 340 / 5e-110 AtTPS25 Terpenoid cyclases/Protein prenyltransferases superfamily protein (.1) AT5G44630 336 / 9e-109 AtTPS11 Terpenoid cyclases/Protein prenyltransferases superfamily protein (.1) AT1G31950 330 / 4e-106 Terpenoid cyclases/Protein prenyltransferases superfamily protein (.1) AT3G32030 330 / 7e-106 Terpenoid cyclases/Protein prenyltransferases superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.007G074466 [exp] 1108 / 0 AT5G23960 443 / 1e-150 terpene synthase 21 (.1.2) Potri.019G016900 [exp] 672 / 0 AT5G23960 474 / 6e-163 terpene synthase 21 (.1.2) Potri.019G016700 [exp] 665 / 0 AT5G23960 482 / 6e-166 terpene synthase 21 (.1.2) Potri.019G020367 [exp] 660 / 0 AT5G23960 494 / 7e-171 terpene synthase 21 (.1.2) Potri.019G045100 [exp] 657 / 0 AT5G23960 474 / 2e-162 terpene synthase 21 (.1.2) Potri.019G023004 [exp] 654 / 0 AT5G23960 474 / 8e-163 terpene synthase 21 (.1.2) Potri.019G016500 [exp] 625 / 0 AT5G23960 463 / 6e-159 terpene synthase 21 (.1.2) Potri.019G016400 [exp] 610 / 0 AT5G23960 436 / 5e-148 terpene synthase 21 (.1.2) Potri.019G045300 [exp] 596 / 0 AT5G23960 416 / 3e-140 terpene synthase 21 (.1.2)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10031590 [exp] 383 / 4e-127 AT5G23960 378 / 3e-125 terpene synthase 21 (.1.2) Lus10008611 [exp] 341 / 2e-110 AT5G23960 348 / 4e-113 terpene synthase 21 (.1.2) Lus10040043 [exp] 339 / 8e-110 AT5G23960 329 / 7e-106 terpene synthase 21 (.1.2) Lus10008614 [exp] 338 / 1e-109 AT5G23960 345 / 1e-112 terpene synthase 21 (.1.2) Lus10042204 [exp] 334 / 8e-108 AT5G23960 347 / 4e-113 terpene synthase 21 (.1.2) Lus10031589 [exp] 329 / 1e-105 AT5G23960 318 / 3e-101 terpene synthase 21 (.1.2) Lus10002660 [exp] 318 / 9e-102 AT3G14520 310 / 4e-98 Terpenoid cyclases/Protein prenyltransferases superfamily protein (.1) Lus10014724 [exp] 309 / 2e-98 AT5G23960 314 / 2e-100 terpene synthase 21 (.1.2) Lus10042202 [exp] 306 / 4e-97 AT5G23960 302 / 8e-96 terpene synthase 21 (.1.2) Lus10033643 [exp] 265 / 2e-80 AT4G16730 356 / 2e-115 terpene synthase 02 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF01397 [poplar] [flax] Terpene_synth Terpene synthase, N-terminal domain CL0613 [poplar] [flax] Terp_synthase PF03936 [poplar] [flax] Terpene_synth_C Terpene synthase family, metal binding domain
Representative CDS sequence Show only first row Show all	>Potri.007G074400.1 pacid=42765049 polypeptide=Potri.007G074400.1.p locus=Potri.007G074400 ID=Potri.007G074400.1.v4.1 annot-version=v4.1 ATGGCATTGCAGACAGATTTACCAGCAAACAGCATGCAGAACTTCCGTCCATTGGCTGACTTCCCTCCCACTGAATGGGGTTTTAGCTTCGTTTCGTTTT CGTTCCCAGAAATGGAATTCGAATCATACAATAGACAAGTAGAAGAGTTGAAGAATATTGTGATGGGCATGTTAATGGCTTCTAAAAAGGATCCTGTTGA AAACGTTGAGTTTATCAACCTGCTATGCCGCCTCGGTGTATCATATCACTTCGAAACTGAGATTGAAGATCAAGTAGATTATGTTCATGATTCTCTTCCC TATCTTCTTGAAAATAATGACCACGATCTCCACACTGTTGCACTTTTATTTCGAGTTCTAAGGCAAAATGGATGCAAAGTGTCTTCTGATGTGTTCAAGA AATTCAAGGACACCAATGGTGAGTTCAAGAAAACCATTACCAGTGATGTGAAAGGCAATCTTAGCTTGCACGAAGCTGCCCATTTGAGTGTCAATGGAGA GCAAATCTTAGATGAAGCCTTGGAGTTTTCAAGGACAAACCTAGAGTCCTTGGCAACGCAGTCAGGCCCTCGTCTTGCAAGACACATTAAGTATGCTCTG ATCCGACCGATCCACAAAACCGTTCAGAGACTCGAGGCCAGGGAATACATCTCTTTTTACGAAGAAGAAGATTTTCGAAACGAAACTTTGCTTAAATTTG CAAAACTAGATTTCAACAGGGTACAATTACTGCACCAGCAAGAGCTAAGCACACTCTCAAGCTGGTGGAAAGACTTAAATTTGGTTGAAGAGTTGCCTTA TGCAAGGGACAGAATTGTTGAGATGTATTTTTGGGTCAATGCAATGCATTTTGAGCCTCAGTATGCTCTTGCTCGGATCTTGTCCACAAAGCTTGGAGCT TTGATCACCGTCATAGACGACACATATGATGCGTATTCTACGTATGAAGAACTTCAACATTTTACCAAGGCTGTTATCAGATGCAATATCGATGCCATCG ATCAGCTACCCACGGATTCCATGAAAGCTCTTTATAGGGCTCTCTTAAGTTATTTTGATGACGTTGCAAATGAAGTTAGCAAGAATGGAAAATCCTTTAC TGCTGTCAAATATGTGAAGGAGGAGATGAAAGAGATGATAAGAACCTACATAGTCGAGGCTCAATGGTGTAACGATCGTTTTGTGCCGCCATTGAATGAG TATGTGCGCAATGGAAAAATCTCGATTGGTTTTATGGCAACGACAACAGTATTCTTCGTAGTTGAAACTGCAAGAATCAAAGAATTGGAATGGTTAACAA GTAAAGCAAAAATCTCCGAGGCAGGATGTTTGTTTCTCCGCCTTATGAATGACATAGTGACCCATGAGTTTGAACAAAAGAGGGAGCATTGTGCTTCTGC AATTGAATGCTACATGAAAGAATATGGAGTCTCCATGAACGAGGCAGTTAAAGAGCTTCAGAAAACATGTGCAGATGCATGGAAGGACATTAACGAAGAC TGCTTGAAGCCCACTGCCATCTCCATGAATCTCCTTAAGGTGTGTGTCAACAATGCACGTGCAACAGACGTCGTTTATGAGAGCAACGACGCCTACACAA ATGCATCATGCTTGAAAGGTCGCATCAGTTTATTGTTCGTGGAGAAAATATCCCTTTAA
AA sequence Show only first row Show all	>Potri.007G074400.1 pacid=42765049 polypeptide=Potri.007G074400.1.p locus=Potri.007G074400 ID=Potri.007G074400.1.v4.1 annot-version=v4.1 MALQTDLPANSMQNFRPLADFPPTEWGFSFVSFSFPEMEFESYNRQVEELKNIVMGMLMASKKDPVENVEFINLLCRLGVSYHFETEIEDQVDYVHDSLP YLLENNDHDLHTVALLFRVLRQNGCKVSSDVFKKFKDTNGEFKKTITSDVKGNLSLHEAAHLSVNGEQILDEALEFSRTNLESLATQSGPRLARHIKYAL IRPIHKTVQRLEAREYISFYEEEDFRNETLLKFAKLDFNRVQLLHQQELSTLSSWWKDLNLVEELPYARDRIVEMYFWVNAMHFEPQYALARILSTKLGA LITVIDDTYDAYSTYEELQHFTKAVIRCNIDAIDQLPTDSMKALYRALLSYFDDVANEVSKNGKSFTAVKYVKEEMKEMIRTYIVEAQWCNDRFVPPLNE YVRNGKISIGFMATTTVFFVVETARIKELEWLTSKAKISEAGCLFLRLMNDIVTHEFEQKREHCASAIECYMKEYGVSMNEAVKELQKTCADAWKDINED CLKPTAISMNLLKVCVNNARATDVVYESNDAYTNASCLKGRISLLFVEKISL

---

DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G23960		ATTPS21	terpene synthase 21 (.1.2)		Potri.007G074400 [exp]	0	1
					Potri.004G221500 [exp]	1.00	0.9813
AT5G23960		ATTPS21	terpene synthase 21 (.1.2)		Potri.007G074466 [exp]	1.41	0.9802
AT3G59850			Pectin lyase-like superfamily ...		Potri.017G005300 [exp]	14.07	0.9603
AT3G11840		PUB24	plant U-box 24 (.1)		Potri.016G069500 [exp]	14.35	0.9598
AT2G31335			unknown protein		Potri.010G075133 [exp]	18.41	0.9780
AT4G16260			Glycosyl hydrolase superfamily...		Potri.009G050300 [exp]	24.20	0.9093
					Potri.010G135600 [exp]	25.61	0.9745
					Potri.007G060500 [exp]	26.60	0.9269
AT3G53310	B3	REM20	AP2/B3-like transcriptional fa...		Potri.004G221600 [exp]	29.24	0.9730
AT4G14880		OLD3, CYTACS1, ...	ONSET OF LEAF DEATH 3, O-acety...		Potri.005G048400 [exp]	32.12	0.9720

Compare expression of checked genes

Potri.007G074400 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.