Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G08335 298 / 2e-104 ATICMTB, ATSTE14B ARABIDOPSIS THALIANA ISOPRENYL CYSTEINE METHYLTRANSFERASE B, Isoprenylcysteine carboxyl methyltransferase (ICMT) family (.1) AT5G23320 283 / 2e-98 ATICMTA, ATSTE14A, ATPCM LPHA-CARBOXYL METHYLTRANSFERASE, ARABIDOPSIS THALIANA ISOPRENYL CYSTEINE METHYLTRANSFERASE A, homolog of yeast STE14 A (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.005G089500 [exp] 361 / 3e-129 AT5G08335 285 / 4e-99 ARABIDOPSIS THALIANA ISOPRENYL CYSTEINE METHYLTRANSFERASE B, Isoprenylcysteine carboxyl methyltransferase (ICMT) family (.1) Potri.009G033700 [exp] 44 / 3e-05 AT5G59500 439 / 1e-153 protein C-terminal S-isoprenylcysteine carboxyl O-methyltransferases (.1) Potri.001G242400 [exp] 39 / 0.001 AT5G59500 451 / 4e-158 protein C-terminal S-isoprenylcysteine carboxyl O-methyltransferases (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10037842 [exp] 301 / 2e-105 AT5G08335 293 / 2e-102 ARABIDOPSIS THALIANA ISOPRENYL CYSTEINE METHYLTRANSFERASE B, Isoprenylcysteine carboxyl methyltransferase (ICMT) family (.1) Lus10030398 [exp] 295 / 2e-102 AT5G08335 285 / 2e-98 ARABIDOPSIS THALIANA ISOPRENYL CYSTEINE METHYLTRANSFERASE B, Isoprenylcysteine carboxyl methyltransferase (ICMT) family (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0115 [poplar] [flax] Steroid_dh PF04191 [poplar] [flax] PEMT Phospholipid methyltransferase
Representative CDS sequence Show only first row Show all	>Potri.007G074500.2 pacid=42766620 polypeptide=Potri.007G074500.2.p locus=Potri.007G074500 ID=Potri.007G074500.2.v4.1 annot-version=v4.1 ATGACAGAAATTTTTGGATATACGGCTTGCAGACAGTTATTCCAGATGTTTTTGGCTGTGCTCTTTTTTCATAGTTCTGAATATGTTTTAGTTGCTGCTA TTCATGGGAGATCAAGTGTTAATCTTAGTTCACTCTTGATCAGCAAAGCTTATGTGTTTGCAATGATGTTTGCGTTGCTTGAGTATGTTGTTGAGATTGC TTTATTTCCTGGGTTGAAGGAATATTGGTGGGTAAGCAATTTAGGTCTTGTGATGGTTATAATTGGGGAGATTACTCGGAAGCTAGCCATTGTAACAGCT GGACAATCGTTCACACATCTGATTAAGGTTAATCATGAGGAGCAACATAATTTGATAACTCATGGAGTGTATAGGTTTGTACGTCATCCATCATACACTG GTTTCTTAATCTGGTCAGTGGGAACTCAGATAATGTTATGTAATCCTATATCGACAATTGGGTTTGCTATTGTTGTCTGGCGCTTCTTTTCTCAACGGAT ACCATATGAAGAGTTTTTCTTGAGGCAGTTTTTTGGGTCGGAGTATGTGGAATATGCTTCGAAAACTCCTTCTGGAGTTCCATTTGTGAAGTGA
AA sequence Show only first row Show all	>Potri.007G074500.2 pacid=42766620 polypeptide=Potri.007G074500.2.p locus=Potri.007G074500 ID=Potri.007G074500.2.v4.1 annot-version=v4.1 MTEIFGYTACRQLFQMFLAVLFFHSSEYVLVAAIHGRSSVNLSSLLISKAYVFAMMFALLEYVVEIALFPGLKEYWWVSNLGLVMVIIGEITRKLAIVTA GQSFTHLIKVNHEEQHNLITHGVYRFVRHPSYTGFLIWSVGTQIMLCNPISTIGFAIVVWRFFSQRIPYEEFFLRQFFGSEYVEYASKTPSGVPFVK

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G08335		ATICMTB, ATSTE1...	ARABIDOPSIS THALIANA ISOPRENYL...		Potri.007G074500 [exp]	0	1
AT3G23805		RALFL24	ralf-like 24 (.1)		Potri.001G320700 [exp]	2.23	0.8125
AT3G61920			unknown protein		Potri.002G178900 [exp]	5.09	0.7852
AT5G64667		IDL2	inflorescence deficient in abs...		Potri.007G110700 [exp]	11.61	0.7785
AT2G30700			unknown protein		Potri.017G018000 [exp]	12.40	0.7213
AT1G46264	HSF	SCZ, AT-HSFB4	SCHIZORIZA, heat shock transcr...		Potri.001G273700 [exp]	12.64	0.7732
AT5G54160		ATOMT1	O-methyltransferase 1 (.1)		Potri.002G076766 [exp]	17.02	0.6661
AT1G12845			unknown protein		Potri.017G060400 [exp]	19.05	0.7282
AT4G23720			Protein of unknown function (D...		Potri.001G096000 [exp]	20.78	0.7411
AT5G59350			unknown protein		Potri.010G206100 [exp]	22.18	0.7760
AT1G04635		EMB1687	EMBRYO DEFECTIVE 1687, ribonuc...		Potri.015G001000 [exp]	22.84	0.7598

Compare expression of checked genes

Potri.007G074500 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.