Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G19960 1900 / 0 ATM1, ATATM myosin 1 (.1.2) AT1G50360 1847 / 0 ATVIIIA, VIIIA MYOSIN VIII A, P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) AT5G54280 1248 / 0 ATMYOS1, ATM4, ATATM2, ATM2 ARABIDOPSIS THALIANA MYOSIN 1, ARABIDOPSIS THALIANA MYOSIN 4, myosin 2 (.1.2) AT4G27370 1158 / 0 ATVIIIB, TVIIIB, VIIIB MYOSIN VIII B, P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) AT5G43900 648 / 0 XI-6, XI-2, ATMYA2, MYA2 MYOSIN XI-6, MYOSIN X1 2, ARABIDOPSIS MYOSIN 2, myosin 2 (.1.2.3) AT1G08730 647 / 0 PCR43, ATXIC, XIC MYOSIN XI C, Myosin family protein with Dil domain (.1) AT1G54560 644 / 0 PCR1, ATXIE, XIE MYOSIN XI E, Myosin family protein with Dil domain (.1) AT1G04160 634 / 0 XI-B, XI-8, ATXIB, XIB MYOSIN XI-8, ARABIDOPSIS THALIANA MYOSIN XI B, myosin XI B (.1) AT1G17580 632 / 0 XI-1, ATMYA1, MYA1 MYOSIN XI 1, ARABIDOPSIS MYOSIN 1, myosin 1 (.1) AT2G33240 630 / 0 ATXID, XID myosin XI D (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.005G089200 [exp] 2244 / 0 AT3G19960 1896 / 0.0 myosin 1 (.1.2) Potri.001G407000 [exp] 1283 / 0 AT5G54280 1513 / 0.0 ARABIDOPSIS THALIANA MYOSIN 1, ARABIDOPSIS THALIANA MYOSIN 4, myosin 2 (.1.2) Potri.011G126800 [exp] 1238 / 0 AT5G54280 1519 / 0.0 ARABIDOPSIS THALIANA MYOSIN 1, ARABIDOPSIS THALIANA MYOSIN 4, myosin 2 (.1.2) Potri.006G220000 [exp] 653 / 0 AT4G33200 2352 / 0.0 MYOSIN XI-15, MYOSIN XI I, myosin, putative (.1.2.3) Potri.013G043900 [exp] 647 / 0 AT1G54560 2512 / 0.0 MYOSIN XI E, Myosin family protein with Dil domain (.1) Potri.001G233100 [exp] 641 / 0 AT2G31900 2385 / 0.0 MYOSIN XI F, MYOSIN 5, myosin-like protein XIF (.1) Potri.006G145700 [exp] 638 / 0 AT5G20490 2580 / 0.0 MYOSIN XI-17, MYOSIN XI K, Myosin family protein with Dil domain (.1.2) Potri.019G013800 [exp] 636 / 0 AT1G54560 2616 / 0.0 MYOSIN XI E, Myosin family protein with Dil domain (.1) Potri.008G174500 [exp] 631 / 0 AT5G43900 2206 / 0.0 MYOSIN XI-6, MYOSIN X1 2, ARABIDOPSIS MYOSIN 2, myosin 2 (.1.2.3)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10013443 [exp] 1855 / 0 AT3G19960 1748 / 0.0 myosin 1 (.1.2) Lus10017377 [exp] 1847 / 0 AT3G19960 1806 / 0.0 myosin 1 (.1.2) Lus10010173 [exp] 1422 / 0 AT3G19960 1389 / 0.0 myosin 1 (.1.2) Lus10038576 [exp] 1155 / 0 AT5G54280 1378 / 0.0 ARABIDOPSIS THALIANA MYOSIN 1, ARABIDOPSIS THALIANA MYOSIN 4, myosin 2 (.1.2) Lus10037876 [exp] 1142 / 0 AT5G54280 1383 / 0.0 ARABIDOPSIS THALIANA MYOSIN 1, ARABIDOPSIS THALIANA MYOSIN 4, myosin 2 (.1.2) Lus10040996 [exp] 1094 / 0 AT3G19960 1049 / 0.0 myosin 1 (.1.2) Lus10022850 [exp] 641 / 0 AT5G43900 2380 / 0.0 MYOSIN XI-6, MYOSIN X1 2, ARABIDOPSIS MYOSIN 2, myosin 2 (.1.2.3) Lus10032597 [exp] 634 / 0 AT5G43900 1925 / 0.0 MYOSIN XI-6, MYOSIN X1 2, ARABIDOPSIS MYOSIN 2, myosin 2 (.1.2.3) Lus10021570 [exp] 627 / 0 AT5G20490 2587 / 0.0 MYOSIN XI-17, MYOSIN XI K, Myosin family protein with Dil domain (.1.2) Lus10023696 [exp] 627 / 0 AT5G43900 1841 / 0.0 MYOSIN XI-6, MYOSIN X1 2, ARABIDOPSIS MYOSIN 2, myosin 2 (.1.2.3)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0023 [poplar] [flax] P-loop_NTPase PF00063 [poplar] [flax] Myosin_head Myosin head (motor domain) CL0220 [poplar] [flax] EF_hand PF00612 [poplar] [flax] IQ IQ calmodulin-binding motif
Representative CDS sequence Show only first row Show all	>Potri.007G074800.5 pacid=42765093 polypeptide=Potri.007G074800.5.p locus=Potri.007G074800 ID=Potri.007G074800.5.v4.1 annot-version=v4.1 ATGGCATCTGTTGGAACTCAATCGTCAGGATCAGAGAAAATGTTACCGAAATCCCAGGTCTTGCCTTCTCTAGAGTCGATCAAATCTTTGCCAGTTGATT TTAGGTTCGTGGGTTCGCCAACATCTGAACAATTGGAAAAATCTGTGGATGTGAAATCATTAAATAGCAATGCAGTCTGTTTGAGTTTTCCAGAAAAAAA TGATATAGGGAATGGCCTTGTTGAGGGAGCTGAGGATAGTGTTGGCAATGATGTCAGTGAGGATTCACCTTATAGTCGGACTGCTATCTTGATTGAACAA AGGCCTTCTGTGGGTGATGAAGATTTGGACACTGTGGTTATGCCTTTGCCTTCGATATCAACATCTCGCAGGGAACGCAGGTGGTCTGATACCAGCTCCT ATGCTACAAACAAGAAACTTCAATCTTGGTTTCAACTTCCTAATGGGAATTGGGAGCTGGGGAAGATTTTATCAACTTCAGGGACCGAGTCTACTATTTC TCTCCCTGATGGAAAAGTTTTAAAGGTGAAAACTGAAAGTCTTGTGCCAGCAAATCCTGATATCCTTGATGGTGTAGATGATCTCATGCAACTTAGTTAC CTAAATGAGCCATCAGTGTTGTACAATCTTCAGTATAGATACAATCATGATATGATTTATACAAAAGCAGGGCCAGTTCTGGTAGCCATCAATCCTTTTA AGGAAGTTCCTTTATATGGAAATAATTACATTGAAGCATATAAGAATAAATCTATGGAGAGCCCACATGTGTATGCCATTACAGACACGGCCATCCGGGA AATGATACGAGATGAAGTAAATCAATCTATCATTATAAGTGGTGAAAGTGGAGCAGGAAAAACAGAGACAGCAAAGATAGCAATGCAATATTTGGCTGCT CTTGGTGGTGGCAGTGGGATAGAATATGAAATATTGAAAACCAATCCTATTCTAGAAGCCTTTGGTAATGCCAAGACATTGAGGAATGACAACTCAAGTC GCTTTGGAAAGCTGATTGAAATCCACTTTAGTGAAACAGGAAAAATATCAGGTGCCAAAATTCAAACATTTTTACTGGAAAAGTCCAGAGTGGTCCAATG CATGGAGGGTGAGAGGTCATATCATATATTTTATCAGCTTTGTGCTGGGGCTTCACCAAAACTAAGAGAGAAAATAAACTTGAAGATTGCAAGTGAATAT AAATATTTAAGGCAGAGCAATTGCTACACAATTACTGGGGTTGATGATGCTGAACGCTTCCATGCTGTTATGGAAGCTCTGGATATTGTTCATGTCAGCA AGGAAAACCAAGAGAGTGTATTTGCAATGCTTGCTGCAGTGCTGTGGCTTGGAAATGTCTCATTTTCGGTTGTTGATAATGAAAATCATGTTGAACCTAT GGCAGATGAAGGTCTAACCACTGTTGCAAAATTGATTGGATGTAATGTTGGGGAGCTTAAGCTGGCTTTATCTACTCGCAAGATGAGGGTTGGAAATGAT ACAATTGTCCAAAAGCTAACCTTATCACAGGCAATTGATACAAGAGATGCTCTGGCAAAGTCGATATATTCTTGCTTGTTTGATTGGCTTGTTGAACAAG TCAACAAATCACTTGCAGTTGGTAAAAGGAGAACCGGCAGATCCATCAGCATTCTTGACATTTATGGATTTGAATCGTTTGAAAGAAATAGTTTTGAGCA ATTCTGCATAAATTATGCGAATGAGAGATTACAGCAACACTTCAATCGTCATTTATTCAAGTTGGAGCAGGAGGAATACATACAAGATGGCATTGACTGG GCCAAGGTTGACTTTGAAGATAACCAAGACTGTCTCAATCTTTTTGAAAAGAAACCTTTGGGCTTATTATCATTACTGGATGAGGAGTCCACCTTTCCAA ATGGCACAGATTTGACATTTGCCAACAAGCTTAAACAGCATTTGAACTCTAATTCTTGTTTCAGAGGAGAGCGAGGCAAGGCCTTCAGTGTCAGCCATTA TGCTGGCGAGGTTACTTATGATACAACTGGATTTCTGGAGAAGAATAGAGACTTATTACACTTGGACTCTATCCAGCTTCTCTCTTCATGTTCATGCCAT CTCCCCCAGATATTTGCTTCCAATATGCTTACACAAACTGAGAAACCTATAGTTGGTCATTTATATAAAGCAGGTGGAGCAGATTCACAAAAGCTAAGTG TTGCAACAAAATTTAAGGGCCAACTGTTCCAATTGATGCAACGTCTAGAGAACACAACACCACATTTCATACGTTGTATAAAGCCTAACAACTCTCCTTC TCCTGGGTCATATGAGCAAGGACTTGTATTGCAGCAACTGAGATGTTGCGGAGTTCTAGAAGTAGTTCGTATATCAAGGTGTGGATTTCCTACCAGAATG TCACACCAGAAGTTTGCCAGAAGATATGGTTTTCTTCTGCTGGAAAATGTTGCTTCTCAAGATCCACTCAGCGTATCAGTTGCAATTCTTCATCAGTTCG ATATCATGCCAGAGATGTATCAAGTTGGCTACACAAAATTATTTTTCCGAACAGGACAGATTGGTGTGCTTGAGGATACAAGAAACCGCACTCTACATGG TATTTTACGTGTTCAAAGCTGTTTCAGAGGGCACCAAGCTCGCAGTTACCTCAGGCAGCTCAGAAGAGGAGTTTGTGCTCTTCAGTCATTTGTTCGTGGA GAGAAATTCAGAAAGGAATATGCAGTCTTACAACAAAGACATAGAGCTGCTGTTGTTATACAAAGACACATCAAAAGCACAATCTGTAGGAAAAAATACA AAAACATGCATCAAGCATCAATCTTGATACAATCAGTTATTCGTGGATGGTTGGTGAGAAGATTTTCAGGTGATGTAGGATTATTGAAATCTGGGGCAAC TAAGGGCAATGAGTCAGATGAGGTGCTCATGAAGGCATCTTATCTTGCTGAATTACAGCGACGAGTTCTCAAAGCTGAGGCTGCTCTTAGAGAGAAAGAG GAGGAGAATGACATCCTTCACCAACGGCTCCAACAATATGAGAGCCGCTGGTCTGAATATGAGTTAAAAATGAAGTCCATGGAAGAAATGTGGCAGAAAC AGATGAGATCCCTACAATCCAGCCTCTCCATTGCAAAGAAGAGCCTATCTGTTGATGATTCTGAGAGAAATTCTGATGCATCAGTCAACGCAAGCGAAGA GAGAGACTTTAGCTGGGATACAGGAAGTAACCATAGGGGTCAAGAAAATAACGGTGTGAGACCAATTAGTGCGGGCTTGAGTGTTATAAGCCGGTTAGCT GAAGAATTTGAGCAGAGGAGTCAAGTCTTTGGAGATGATGCCAAGTTCTTGGTAGAGGTAAAATCTGGTCAGGTTGATGCAAGTATGAATGCTGACCGAG AGCTCAGAAGGTTAAAGCAGATGTTTGAAGCTTGGAAGAAGGATTATGGATCGAGACTACGGGAAACAAAGTTGATTTTGAACAAGCTCGGAACTGATGA AGGTGCCCTTGATAGGGTGAAAAAGAAGTGGTGGGGCAGGAGGAACAGCACGAGGTATAGTTAG
AA sequence Show only first row Show all	>Potri.007G074800.5 pacid=42765093 polypeptide=Potri.007G074800.5.p locus=Potri.007G074800 ID=Potri.007G074800.5.v4.1 annot-version=v4.1 MASVGTQSSGSEKMLPKSQVLPSLESIKSLPVDFRFVGSPTSEQLEKSVDVKSLNSNAVCLSFPEKNDIGNGLVEGAEDSVGNDVSEDSPYSRTAILIEQ RPSVGDEDLDTVVMPLPSISTSRRERRWSDTSSYATNKKLQSWFQLPNGNWELGKILSTSGTESTISLPDGKVLKVKTESLVPANPDILDGVDDLMQLSY LNEPSVLYNLQYRYNHDMIYTKAGPVLVAINPFKEVPLYGNNYIEAYKNKSMESPHVYAITDTAIREMIRDEVNQSIIISGESGAGKTETAKIAMQYLAA LGGGSGIEYEILKTNPILEAFGNAKTLRNDNSSRFGKLIEIHFSETGKISGAKIQTFLLEKSRVVQCMEGERSYHIFYQLCAGASPKLREKINLKIASEY KYLRQSNCYTITGVDDAERFHAVMEALDIVHVSKENQESVFAMLAAVLWLGNVSFSVVDNENHVEPMADEGLTTVAKLIGCNVGELKLALSTRKMRVGND TIVQKLTLSQAIDTRDALAKSIYSCLFDWLVEQVNKSLAVGKRRTGRSISILDIYGFESFERNSFEQFCINYANERLQQHFNRHLFKLEQEEYIQDGIDW AKVDFEDNQDCLNLFEKKPLGLLSLLDEESTFPNGTDLTFANKLKQHLNSNSCFRGERGKAFSVSHYAGEVTYDTTGFLEKNRDLLHLDSIQLLSSCSCH LPQIFASNMLTQTEKPIVGHLYKAGGADSQKLSVATKFKGQLFQLMQRLENTTPHFIRCIKPNNSPSPGSYEQGLVLQQLRCCGVLEVVRISRCGFPTRM SHQKFARRYGFLLLENVASQDPLSVSVAILHQFDIMPEMYQVGYTKLFFRTGQIGVLEDTRNRTLHGILRVQSCFRGHQARSYLRQLRRGVCALQSFVRG EKFRKEYAVLQQRHRAAVVIQRHIKSTICRKKYKNMHQASILIQSVIRGWLVRRFSGDVGLLKSGATKGNESDEVLMKASYLAELQRRVLKAEAALREKE EENDILHQRLQQYESRWSEYELKMKSMEEMWQKQMRSLQSSLSIAKKSLSVDDSERNSDASVNASEERDFSWDTGSNHRGQENNGVRPISAGLSVISRLA EEFEQRSQVFGDDAKFLVEVKSGQVDASMNADRELRRLKQMFEAWKKDYGSRLRETKLILNKLGTDEGALDRVKKKWWGRRNSTRYS

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT3G19960		ATM1, ATATM	myosin 1 (.1.2)		Potri.007G074800 [exp]	0	1
AT1G15240			Phox-associated domain;Phox-li...		Potri.001G183100 [exp]	3.00	0.7506
AT4G20850		TPP2	tripeptidyl peptidase ii (.1)		Potri.012G142200 [exp]	3.46	0.6860
AT2G35800		SAMTL	S-adenosyl methionine transpor...		Potri.010G217900 [exp]	4.24	0.7332
AT1G56460			HIT zinc finger ;PAPA-1-like c...		Potri.005G014000 [exp]	12.48	0.6794
AT5G43500		ATARP9	actin-related protein 9 (.1.2)		Potri.010G073600 [exp]	22.91	0.6370
AT2G26000		BRIZ2	BRAP2 RING ZnF UBP domain-cont...		Potri.007G063900 [exp]	26.45	0.6519
AT5G04240	JUMONJI	ELF6	EARLY FLOWERING 6, Zinc finger...		Potri.008G037800 [exp]	31.43	0.6359
AT1G43850		SEU	SEUSS transcriptional co-regul...		Potri.013G089900 [exp]	36.22	0.6262
AT2G35920			RNA helicase family protein (....		Potri.016G068900 [exp]	39.20	0.6128
AT2G27790			RNA-binding (RRM/RBD/RNP motif...		Potri.009G167600 [exp]	39.76	0.5850

Compare expression of checked genes

Potri.007G074800 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.