Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G26300 383 / 2e-128 CYP71B34 "cytochrome P450, family 71, subfamily B, polypeptide 34", cytochrome P450, family 71, subfamily B, polypeptide 34 (.1) AT3G48310 375 / 2e-125 CYP71A22 "cytochrome P450, family 71, subfamily A, polypeptide 22", cytochrome P450, family 71, subfamily A, polypeptide 22 (.1) AT3G48270 372 / 3e-124 CYP71A26 "cytochrome P450, family 71, subfamily A, polypeptide 26", cytochrome P450, family 71, subfamily A, polypeptide 26 (.1) AT3G48280 371 / 6e-124 CYP71A25 "cytochrome P450, family 71, subfamily A, polypeptide 25", cytochrome P450, family 71, subfamily A, polypeptide 25 (.1) AT3G48300 371 / 6e-124 CYP71A23 "cytochrome P450, family 71, subfamily A, polypeptide 23", cytochrome P450, family 71, subfamily A, polypeptide 23 (.1) AT3G26310 368 / 2e-122 CYP71B35 "cytochrome P450, family 71, subfamily B, polypeptide 35", cytochrome P450, family 71, subfamily B, polypeptide 35 (.1) AT3G26330 367 / 4e-122 CYP71B37 "cytochrome P450, family 71, subfamily B, polypeptide 37", cytochrome P450, family 71, subfamily B, polypeptide 37 (.1) AT3G26210 367 / 4e-122 CYP71B23 "cytochrome P450, family 71, subfamily B, polypeptide 23", cytochrome P450, family 71, subfamily B, polypeptide 23 (.1) AT5G25120 363 / 1e-120 CYP71B11 "ytochrome p450, family 71, subfamily B, polypeptide 11", ytochrome p450, family 71, subfamily B, polypeptide 11 (.1) AT5G57260 361 / 6e-120 CYP71B10 "cytochrome P450, family 71, subfamily B, polypeptide 10", cytochrome P450, family 71, subfamily B, polypeptide 10 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.007G074850 [exp] 999 / 0 AT3G26300 379 / 1e-126 "cytochrome P450, family 71, subfamily B, polypeptide 34", cytochrome P450, family 71, subfamily B, polypeptide 34 (.1) Potri.007G075000 [exp] 937 / 0 AT3G26300 386 / 2e-129 "cytochrome P450, family 71, subfamily B, polypeptide 34", cytochrome P450, family 71, subfamily B, polypeptide 34 (.1) Potri.007G074300 [exp] 778 / 0 AT3G26300 343 / 6e-113 "cytochrome P450, family 71, subfamily B, polypeptide 34", cytochrome P450, family 71, subfamily B, polypeptide 34 (.1) Potri.011G130850 [exp] 663 / 0 AT3G26300 361 / 5e-120 "cytochrome P450, family 71, subfamily B, polypeptide 34", cytochrome P450, family 71, subfamily B, polypeptide 34 (.1) Potri.011G130800 [exp] 662 / 0 AT3G26300 359 / 4e-119 "cytochrome P450, family 71, subfamily B, polypeptide 34", cytochrome P450, family 71, subfamily B, polypeptide 34 (.1) Potri.008G223500 [exp] 547 / 0 AT3G26300 395 / 3e-133 "cytochrome P450, family 71, subfamily B, polypeptide 34", cytochrome P450, family 71, subfamily B, polypeptide 34 (.1) Potri.001G365100 [exp] 530 / 0 AT3G26300 347 / 2e-114 "cytochrome P450, family 71, subfamily B, polypeptide 34", cytochrome P450, family 71, subfamily B, polypeptide 34 (.1) Potri.001G364600 [exp] 524 / 0 AT5G25120 352 / 2e-116 "ytochrome p450, family 71, subfamily B, polypeptide 11", ytochrome p450, family 71, subfamily B, polypeptide 11 (.1) Potri.015G028000 [exp] 497 / 7e-173 AT1G13080 326 / 3e-106 "cytochrome P450, family 71, subfamily B, polypeptide 2", cytochrome P450, family 71, subfamily B, polypeptide 2 (.1.2)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10016601 [exp] 569 / 0 AT3G26320 402 / 6e-136 "cytochrome P450, family 71, subfamily B, polypeptide 36", cytochrome P450, family 71, subfamily B, polypeptide 36 (.1) Lus10029035 [exp] 514 / 2e-179 AT1G13110 402 / 1e-135 "cytochrome P450, family 71 subfamily B, polypeptide 7", cytochrome P450, family 71 subfamily B, polypeptide 7 (.1) Lus10009903 [exp] 498 / 3e-173 AT5G57260 376 / 1e-125 "cytochrome P450, family 71, subfamily B, polypeptide 10", cytochrome P450, family 71, subfamily B, polypeptide 10 (.1) Lus10002885 [exp] 496 / 6e-172 AT3G48280 396 / 2e-133 "cytochrome P450, family 71, subfamily A, polypeptide 25", cytochrome P450, family 71, subfamily A, polypeptide 25 (.1) Lus10012767 [exp] 492 / 9e-171 AT3G26210 386 / 1e-129 "cytochrome P450, family 71, subfamily B, polypeptide 23", cytochrome P450, family 71, subfamily B, polypeptide 23 (.1) Lus10030708 [exp] 491 / 3e-170 AT3G26210 390 / 6e-131 "cytochrome P450, family 71, subfamily B, polypeptide 23", cytochrome P450, family 71, subfamily B, polypeptide 23 (.1) Lus10013194 [exp] 489 / 8e-170 AT5G25120 387 / 9e-130 "ytochrome p450, family 71, subfamily B, polypeptide 11", ytochrome p450, family 71, subfamily B, polypeptide 11 (.1) Lus10034230 [exp] 489 / 1e-169 AT1G13110 400 / 9e-135 "cytochrome P450, family 71 subfamily B, polypeptide 7", cytochrome P450, family 71 subfamily B, polypeptide 7 (.1) Lus10030924 [exp] 485 / 8e-168 AT3G26300 391 / 2e-131 "cytochrome P450, family 71, subfamily B, polypeptide 34", cytochrome P450, family 71, subfamily B, polypeptide 34 (.1) Lus10019157 [exp] 484 / 1e-167 AT3G48300 358 / 1e-118 "cytochrome P450, family 71, subfamily A, polypeptide 23", cytochrome P450, family 71, subfamily A, polypeptide 23 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF00067 [poplar] [flax] p450 Cytochrome P450
Representative CDS sequence Show only first row Show all	>Potri.007G074900.1 pacid=42765025 polypeptide=Potri.007G074900.1.p locus=Potri.007G074900 ID=Potri.007G074900.1.v4.1 annot-version=v4.1 ATGGATCAAGTATTCCAGTTTATCTATATCCTTATTGTACCTTTCCTTCTCTTAATCTTCCCAGTTCTGAGATTATGGAAGAAATCACAAGGTAACAACT CATCAACTCCACCTCCACCTCCTGGACCATGGAAATTACCCTTAATTGGAAACCTTCACCAGCTACTTGGCTCTCTACCCCATCAAGTCCTAAGAGACAT GGCCAATAAATATGGACCAGTCATGCAACTTCAAATTGGAGAAGTTCCCACTGTCATTATCTCATCACCAGAAGCAGCAAAAGAAGCAATAAAAACCCAC GAGATCAACTTTGTCGACAGACCATGTCTCCTTGTTGCAAAAGTCATGTTTTACAATAGCAAGGACATTGCATTTGCCCCATATGGAGACTATTGGAGAC AAATGAAAAAGGTTTGCGTATTGGAGCTACTTAGCGCGAAACGTGTAAAATCATTCAGATCAATCAGGGAAGAAGAGGTATCAAATTTTATGAGAACCAT TTATTCAAAAGCAGGTTCGCCAATCAACCTTAGCAAAATGATGTTTGATTTATTAAATGGCATCACTGCAAGAACAAGTGTTGGTAAGAAATACAAGCAC CAAGAAGCATTCTTACCGATTATTGAGCATGTGATGGAGGCAATGGGAGGTATGAATATTGCAGATGTATTCCCTTCCTCTAAGCTGTTGTACATGATCA GTAGGTTTAGGTCTAGGCTCGAAAGGTCGCATCAAGACGCAGATGAGATCCTAGAAAACATTATATATGAACATAGAGTCTGCAGGGAAGTGGCAAAGAC TGATGAAGAGAGTGAAGCGGAGAATCTTCTGGATGTTCTTTTGAATCTCCAGAATCACGGGGACCTTGGATTCCCTTTGACAACAGACAGCATCAAAGCA ACCATCCTGGAACTATTCACCGCTGGGAGTGATTCATCATCAACATTAATGGAATGGACAATGTCCGAAATGTTGAGAAATCCAAGGGTAATGCGAAAGG CACAAGAGGAAGTGAGGCAAGTCTTTAGTAATACTGAGGATGTTGATGAAACAAGTCTTCACAATTTGGAATTCTTGAAGCTGATTATCAAAGAAACTCT GAGGCTACATCCTCCAGCTCCTTTTATTCCAAGAGAATGCAACAAGACGTGCGAGATTAATGGATATGTCATACAGGCTAAAAGTAAAGTGATGATCAAT GCGTGGGCTATTGGAAGAGATTCTGATCATTGGACTGAAGCTGAGAAATTCTATCCAGAGAGATTCCTAGATAGTTCGATTGATTATATGGGTACTAATT TTGAATTCATCCCATTTGGTGCTGGGAAGAGGATGTGTCCTGGCATTTTATTTGGTATAGCTACTGTCGAGCTTCCACTTGCGCAGCTGCTATACCATTT CGATTGGAAACTTCCAAACGGAGTCCTTTCAGAAGATCTCGACATGAATGAAGTTTTTGTGGGCACGGTTAGAAGGAAACATCAACTTAACGTGATTCCC ATTCCCTTTTATCCTTCGCCCTTGCAATGA
AA sequence Show only first row Show all	>Potri.007G074900.1 pacid=42765025 polypeptide=Potri.007G074900.1.p locus=Potri.007G074900 ID=Potri.007G074900.1.v4.1 annot-version=v4.1 MDQVFQFIYILIVPFLLLIFPVLRLWKKSQGNNSSTPPPPPGPWKLPLIGNLHQLLGSLPHQVLRDMANKYGPVMQLQIGEVPTVIISSPEAAKEAIKTH EINFVDRPCLLVAKVMFYNSKDIAFAPYGDYWRQMKKVCVLELLSAKRVKSFRSIREEEVSNFMRTIYSKAGSPINLSKMMFDLLNGITARTSVGKKYKH QEAFLPIIEHVMEAMGGMNIADVFPSSKLLYMISRFRSRLERSHQDADEILENIIYEHRVCREVAKTDEESEAENLLDVLLNLQNHGDLGFPLTTDSIKA TILELFTAGSDSSSTLMEWTMSEMLRNPRVMRKAQEEVRQVFSNTEDVDETSLHNLEFLKLIIKETLRLHPPAPFIPRECNKTCEINGYVIQAKSKVMIN AWAIGRDSDHWTEAEKFYPERFLDSSIDYMGTNFEFIPFGAGKRMCPGILFGIATVELPLAQLLYHFDWKLPNGVLSEDLDMNEVFVGTVRRKHQLNVIP IPFYPSPLQ

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT3G26300		CYP71B34	"cytochrome P450, family 71, s...		Potri.007G074900 [exp]	0	1
AT3G26300		CYP71B34	"cytochrome P450, family 71, s...		Potri.007G074850 [exp]	1.00	0.9959
AT1G21270		WAK2	wall-associated kinase 2 (.1)		Potri.004G192000 [exp]	8.24	0.8183
					Potri.014G063350 [exp]	8.83	0.9057
AT3G57520		RS2, ATSIP2	raffinose synthase 2, seed imb...		Potri.016G054700 [exp]	16.09	0.8111
AT2G26560		PLP2, PLAIIA, P...	PATATIN-LIKE PROTEIN 2, phosph...		Potri.014G033200 [exp]	16.24	0.8621
AT2G36690			2-oxoglutarate (2OG) and Fe(II...		Potri.005G185000 [exp]	16.94	0.8754
					Potri.016G003033 [exp]	17.66	0.8725
AT3G53830			Regulator of chromosome conden...		Potri.006G089901 [exp]	18.16	0.8780
AT1G76410		ATL8	RING/U-box superfamily protein...		Potri.005G255200 [exp]	20.12	0.8024
AT4G13030			P-loop containing nucleoside t...		Potri.002G247400 [exp]	20.78	0.8285

Compare expression of checked genes

Potri.007G074900 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.