Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G26300 385 / 2e-129 CYP71B34 "cytochrome P450, family 71, subfamily B, polypeptide 34", cytochrome P450, family 71, subfamily B, polypeptide 34 (.1) AT3G26330 370 / 2e-123 CYP71B37 "cytochrome P450, family 71, subfamily B, polypeptide 37", cytochrome P450, family 71, subfamily B, polypeptide 37 (.1) AT3G48310 370 / 2e-123 CYP71A22 "cytochrome P450, family 71, subfamily A, polypeptide 22", cytochrome P450, family 71, subfamily A, polypeptide 22 (.1) AT3G26310 369 / 1e-122 CYP71B35 "cytochrome P450, family 71, subfamily B, polypeptide 35", cytochrome P450, family 71, subfamily B, polypeptide 35 (.1) AT5G25120 368 / 1e-122 CYP71B11 "ytochrome p450, family 71, subfamily B, polypeptide 11", ytochrome p450, family 71, subfamily B, polypeptide 11 (.1) AT5G57260 368 / 1e-122 CYP71B10 "cytochrome P450, family 71, subfamily B, polypeptide 10", cytochrome P450, family 71, subfamily B, polypeptide 10 (.1) AT3G48280 368 / 1e-122 CYP71A25 "cytochrome P450, family 71, subfamily A, polypeptide 25", cytochrome P450, family 71, subfamily A, polypeptide 25 (.1) AT3G48270 367 / 2e-122 CYP71A26 "cytochrome P450, family 71, subfamily A, polypeptide 26", cytochrome P450, family 71, subfamily A, polypeptide 26 (.1) AT3G26320 366 / 1e-121 CYP71B36 "cytochrome P450, family 71, subfamily B, polypeptide 36", cytochrome P450, family 71, subfamily B, polypeptide 36 (.1) AT3G48300 364 / 2e-121 CYP71A23 "cytochrome P450, family 71, subfamily A, polypeptide 23", cytochrome P450, family 71, subfamily A, polypeptide 23 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.007G074850 [exp] 970 / 0 AT3G26300 379 / 1e-126 "cytochrome P450, family 71, subfamily B, polypeptide 34", cytochrome P450, family 71, subfamily B, polypeptide 34 (.1) Potri.007G074900 [exp] 964 / 0 AT3G26300 383 / 3e-128 "cytochrome P450, family 71, subfamily B, polypeptide 34", cytochrome P450, family 71, subfamily B, polypeptide 34 (.1) Potri.007G074300 [exp] 789 / 0 AT3G26300 343 / 6e-113 "cytochrome P450, family 71, subfamily B, polypeptide 34", cytochrome P450, family 71, subfamily B, polypeptide 34 (.1) Potri.011G130850 [exp] 662 / 0 AT3G26300 361 / 5e-120 "cytochrome P450, family 71, subfamily B, polypeptide 34", cytochrome P450, family 71, subfamily B, polypeptide 34 (.1) Potri.011G130800 [exp] 661 / 0 AT3G26300 359 / 4e-119 "cytochrome P450, family 71, subfamily B, polypeptide 34", cytochrome P450, family 71, subfamily B, polypeptide 34 (.1) Potri.008G223500 [exp] 555 / 0 AT3G26300 395 / 3e-133 "cytochrome P450, family 71, subfamily B, polypeptide 34", cytochrome P450, family 71, subfamily B, polypeptide 34 (.1) Potri.001G364600 [exp] 540 / 0 AT5G25120 352 / 2e-116 "ytochrome p450, family 71, subfamily B, polypeptide 11", ytochrome p450, family 71, subfamily B, polypeptide 11 (.1) Potri.001G365100 [exp] 538 / 0 AT3G26300 347 / 2e-114 "cytochrome P450, family 71, subfamily B, polypeptide 34", cytochrome P450, family 71, subfamily B, polypeptide 34 (.1) Potri.015G028000 [exp] 498 / 6e-173 AT1G13080 326 / 3e-106 "cytochrome P450, family 71, subfamily B, polypeptide 2", cytochrome P450, family 71, subfamily B, polypeptide 2 (.1.2)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10016601 [exp] 566 / 0 AT3G26320 402 / 6e-136 "cytochrome P450, family 71, subfamily B, polypeptide 36", cytochrome P450, family 71, subfamily B, polypeptide 36 (.1) Lus10029035 [exp] 511 / 5e-178 AT1G13110 402 / 1e-135 "cytochrome P450, family 71 subfamily B, polypeptide 7", cytochrome P450, family 71 subfamily B, polypeptide 7 (.1) Lus10009903 [exp] 504 / 1e-175 AT5G57260 376 / 1e-125 "cytochrome P450, family 71, subfamily B, polypeptide 10", cytochrome P450, family 71, subfamily B, polypeptide 10 (.1) Lus10012767 [exp] 501 / 1e-174 AT3G26210 386 / 1e-129 "cytochrome P450, family 71, subfamily B, polypeptide 23", cytochrome P450, family 71, subfamily B, polypeptide 23 (.1) Lus10002885 [exp] 501 / 3e-174 AT3G48280 396 / 2e-133 "cytochrome P450, family 71, subfamily A, polypeptide 25", cytochrome P450, family 71, subfamily A, polypeptide 25 (.1) Lus10030708 [exp] 499 / 2e-173 AT3G26210 390 / 6e-131 "cytochrome P450, family 71, subfamily B, polypeptide 23", cytochrome P450, family 71, subfamily B, polypeptide 23 (.1) Lus10013194 [exp] 497 / 1e-172 AT5G25120 387 / 9e-130 "ytochrome p450, family 71, subfamily B, polypeptide 11", ytochrome p450, family 71, subfamily B, polypeptide 11 (.1) Lus10030924 [exp] 493 / 5e-171 AT3G26300 391 / 2e-131 "cytochrome P450, family 71, subfamily B, polypeptide 34", cytochrome P450, family 71, subfamily B, polypeptide 34 (.1) Lus10040120 [exp] 490 / 8e-170 AT3G48280 377 / 5e-126 "cytochrome P450, family 71, subfamily A, polypeptide 25", cytochrome P450, family 71, subfamily A, polypeptide 25 (.1) Lus10019157 [exp] 488 / 3e-169 AT3G48300 358 / 1e-118 "cytochrome P450, family 71, subfamily A, polypeptide 23", cytochrome P450, family 71, subfamily A, polypeptide 23 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF00067 [poplar] [flax] p450 Cytochrome P450
Representative CDS sequence Show only first row Show all	>Potri.007G075000.1 pacid=42766367 polypeptide=Potri.007G075000.1.p locus=Potri.007G075000 ID=Potri.007G075000.1.v4.1 annot-version=v4.1 ATGGAGCAAGTATTCCAGTTTATCCAGATCCTTGTACCTTTCCTCCTCTTAATCTTCACAGTTCTGAGATTGTGGAAGAAATCACAAGGTAACAACTCAT CAACTCCACCTCCACCTCCACCTCCACCTCCTGGACCATGGAAATTACCCTTAATTGGAAACCTTCACCAGCTACTTGGCTCTCTACCCCATCAAGTCCT AAGAGACATGGCCAATAAATATGGACCAGTCATGCAACTTCAAATTGGAGAAGTTCCCACTGTCATTATCTCATCACCAGAAGCAGCAAAAGAAGCAATG AAAACCCAGGAGATCAACTTTGTCGACAGACCTTGTCTCCTTGTTGCAAAAGTCATGTATTACAATAGCAAGGACATTGGCTTTGCCCCATATGGAGACT ATTGGAGACAAATGAAAAAGGTTTGCGTATTGGAGCTACTTAGCGCGAAACGTGTAAAATCATTCAGATCAATCAGGGAAGAAGAGGTATCAAATTTTAT TAGAGCCATTTATTCAAGAGCAGGTTCGCCAATCAACCTTAGCAAAATGATGTTTGATTTATTAAATGGCATCACTGCAAGAGCAAGTGTTGGTAAGAAA TACAAGCACCAAGAAGCATTCTTACCGATTATTGAGCAAGTGATAGAGGCAGTAGGAGGTACGAATATTGCAGATGTATTCCCTTCCTCTAAGCTGTTGT ACATGATCAGTAGGTTTAGGTCTAGGCTCGAAAGGTCGCATCAAGACGCTGATGTGATCCTAGAAAACATTATATATGAACATAGAGTCCGCAGGGAAGT GGCAAAGACTGATGAAGAGAGTGAAGCGGAGGATCTTCTGGATGTTCTTTTGAATCTCCAGAATCACGGGGACCTTGGATTCCCTTTGACAACAGACAGC ATCAAAGCAACCATCCTGGAACTATTCGCCGGTGGGAGTGATACATCATCAACATTAATGGAATGGACAATGTCCGAAATGTTTAGAAATCCGAGGGTAA TGCGAAAGGCACAAGAGGAAGTGAGGCAAGTCTTTAGTAATACTGAGAATGTTGATGAAACATGTCTTCACAATTTGGAATTCTTGAAGCTGATTATCAA AGAAACTCTGAGACTACATCCTCCAGTTCCTTTTATTCCAAGAGAATGCAACAAGACGTGCGAGATTAATGGATATGTCATACAGGCTAAAAGTAGAGTA ATGATCAATGCGTGGGCTATTGGAAGAGATTCTGATCATTGGACTGAAGCTGAGAAATTCTATCCAGAGAGATTCCTAGATAGTTCGATTGATTATAAGG GTACTAATTTTGACTTCATCCCATTTGGTGCTGGGAAGAGGATGTGTCCTGGCATTTTATTTGGTATAGCTACTGTCGAGCTTCCACTTGCGCAGCTGCT ATACCATTTCGATTGGAAACTTCCAAACGGAGACCTTTTAGAAGATCTCGACATGAATGAAGTTTTTGGGGGCACGGTTAGAAGGAAACATCAACTCAAC TTGATTCCCATTCCCTTTTATCCTTCGCCCTTGCAATGA
AA sequence Show only first row Show all	>Potri.007G075000.1 pacid=42766367 polypeptide=Potri.007G075000.1.p locus=Potri.007G075000 ID=Potri.007G075000.1.v4.1 annot-version=v4.1 MEQVFQFIQILVPFLLLIFTVLRLWKKSQGNNSSTPPPPPPPPPGPWKLPLIGNLHQLLGSLPHQVLRDMANKYGPVMQLQIGEVPTVIISSPEAAKEAM KTQEINFVDRPCLLVAKVMYYNSKDIGFAPYGDYWRQMKKVCVLELLSAKRVKSFRSIREEEVSNFIRAIYSRAGSPINLSKMMFDLLNGITARASVGKK YKHQEAFLPIIEQVIEAVGGTNIADVFPSSKLLYMISRFRSRLERSHQDADVILENIIYEHRVRREVAKTDEESEAEDLLDVLLNLQNHGDLGFPLTTDS IKATILELFAGGSDTSSTLMEWTMSEMFRNPRVMRKAQEEVRQVFSNTENVDETCLHNLEFLKLIIKETLRLHPPVPFIPRECNKTCEINGYVIQAKSRV MINAWAIGRDSDHWTEAEKFYPERFLDSSIDYKGTNFDFIPFGAGKRMCPGILFGIATVELPLAQLLYHFDWKLPNGDLLEDLDMNEVFGGTVRRKHQLN LIPIPFYPSPLQ

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT3G26300		CYP71B34	"cytochrome P450, family 71, s...		Potri.007G075000 [exp]	0	1
AT5G49900			Beta-glucosidase, GBA2 type fa...		Potri.003G003400 [exp]	4.00	0.9376
AT4G33920			Protein phosphatase 2C family ...		Potri.007G051900 [exp]	5.91	0.9271
AT3G54700		PHT1;7	phosphate transporter 1;7 (.1)		Potri.005G223600 [exp]	6.24	0.9324	PT1.5,PtrPHT1-7
AT3G21790			UDP-Glycosyltransferase superf...		Potri.016G016500 [exp]	6.48	0.9143
AT3G04070	NAC	ANAC047	NAC domain containing protein ...		Potri.013G054000 [exp]	7.48	0.9318
AT5G61820			unknown protein		Potri.015G108500 [exp]	9.16	0.9287
AT1G06650			2-oxoglutarate (2OG) and Fe(II...		Potri.011G156200 [exp]	10.58	0.8972
AT1G66920			Protein kinase superfamily pro...		Potri.017G116955 [exp]	10.81	0.9261
AT1G11330			S-locus lectin protein kinase ...		Potri.011G038800 [exp]	10.90	0.8802
AT4G37370		CYP81D8	"cytochrome P450, family 81, s...		Potri.014G020500 [exp]	13.49	0.8869	Pt-IFS1.50,CYP81B7

Compare expression of checked genes

Potri.007G075000 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.