Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G08350 240 / 2e-80 GRAM domain-containing protein / ABA-responsive protein-related (.1) AT5G23370 232 / 4e-77 GRAM domain-containing protein / ABA-responsive protein-related (.1) AT5G23350 228 / 6e-75 GRAM domain-containing protein / ABA-responsive protein-related (.1) AT5G23360 226 / 6e-75 GRAM domain-containing protein / ABA-responsive protein-related (.1) AT5G13200 152 / 3e-45 GRAM domain family protein (.1) AT4G01600 150 / 7e-45 GRAM domain family protein (.1.2) AT1G28200 150 / 1e-44 FIP1 FH interacting protein 1 (.1) AT2G22475 142 / 3e-41 GEM GL2-EXPRESSION MODULATOR, GRAM domain family protein (.1.2) AT4G40100 100 / 7e-26 GRAM domain family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.007G075700 [exp] 472 / 9e-172 AT5G08350 240 / 3e-80 GRAM domain-containing protein / ABA-responsive protein-related (.1) Potri.005G088700 [exp] 437 / 3e-158 AT5G08350 234 / 5e-78 GRAM domain-containing protein / ABA-responsive protein-related (.1) Potri.005G088300 [exp] 308 / 3e-107 AT5G23370 244 / 4e-82 GRAM domain-containing protein / ABA-responsive protein-related (.1) Potri.005G088400 [exp] 306 / 2e-106 AT5G23370 241 / 8e-81 GRAM domain-containing protein / ABA-responsive protein-related (.1) Potri.005G088200 [exp] 298 / 5e-103 AT5G08350 230 / 1e-76 GRAM domain-containing protein / ABA-responsive protein-related (.1) Potri.004G068000 [exp] 222 / 5e-73 AT5G08350 196 / 3e-63 GRAM domain-containing protein / ABA-responsive protein-related (.1) Potri.014G109700 [exp] 156 / 1e-47 AT1G28200 221 / 1e-72 FH interacting protein 1 (.1) Potri.003G165400 [exp] 155 / 2e-46 AT5G13200 350 / 6e-122 GRAM domain family protein (.1) Potri.003G165500 [exp] 155 / 5e-46 AT5G13200 328 / 3e-113 GRAM domain family protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10013445 [exp] 340 / 1e-119 AT5G08350 246 / 1e-82 GRAM domain-containing protein / ABA-responsive protein-related (.1) Lus10010167 [exp] 326 / 5e-114 AT5G08350 247 / 4e-83 GRAM domain-containing protein / ABA-responsive protein-related (.1) Lus10040999 [exp] 320 / 9e-112 AT5G08350 234 / 5e-78 GRAM domain-containing protein / ABA-responsive protein-related (.1) Lus10017373 [exp] 318 / 5e-111 AT5G08350 240 / 3e-80 GRAM domain-containing protein / ABA-responsive protein-related (.1) Lus10017372 [exp] 254 / 1e-85 AT5G08350 238 / 2e-79 GRAM domain-containing protein / ABA-responsive protein-related (.1) Lus10010166 [exp] 242 / 5e-81 AT5G08350 233 / 1e-77 GRAM domain-containing protein / ABA-responsive protein-related (.1) Lus10031986 [exp] 158 / 3e-47 AT5G13200 302 / 3e-103 GRAM domain family protein (.1) Lus10035154 [exp] 157 / 3e-47 AT5G13200 308 / 9e-106 GRAM domain family protein (.1) Lus10040539 [exp] 151 / 1e-44 AT1G28200 338 / 6e-118 FH interacting protein 1 (.1) Lus10000640 [exp] 149 / 6e-44 AT1G28200 333 / 5e-116 FH interacting protein 1 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0266 [poplar] [flax] PH PF02893 [poplar] [flax] GRAM GRAM domain
Representative CDS sequence Show only first row Show all	>Potri.007G075200.3 pacid=42765147 polypeptide=Potri.007G075200.3.p locus=Potri.007G075200 ID=Potri.007G075200.3.v4.1 annot-version=v4.1 ATGAAGACTTCACAGAAACAAGTTATTGGAATTCCAATCAGAACAGCATCATATGCAGTTGAGAAGATGCCGAGACTGTTACTTGAAAATGCTGAGCAGC GCTATATTCCAAGTCCTGCAAATAAAGCTCTCGCATGCAAGCAAAATAAAATAGATTCGATGCTTAAAAGGATGAACAAGCTAGGGAAAAAAGCTGACAA ATTTGCTCATGGAATCCGAGAGCATATGAGGTTGGGGACCAAGATCACTGAAACTCTTGTAGGGAAGCTGAGCTTGGGGGCTAGGATCCTTCAAGTAGGA GGGGTGAAGAAAGTTTTTAGGCAGTTATTTAGTGTTAGTGAAGGAGAAAGATTGTTGAGAGTTTGTCAATGTTATTTGTCAACCACAGCTGGTCCTATTG CAGGCCTCCTCTTTATCTCTACTGAAAAGCTTGCCTTCTGCAGTGAGAGATCAATTAAGTTGTCTTCTCCAGAAGGAAAATTGGTCAGAATTCATTATAA GGTAGTTGTCCCATTAAGAAAGATAAGGACAGCCAACCAGAGTGAGAATGCGAAGAAGCCATCAGAGAAGTACATAGAAATAGTTACTGTAGATGATTTT GATTTCTGGTTTATGGGTTTCTTCAGCTACCAGAAAGCTTTCAAGTCTCTTCAGCAGGCAATAACGCAAACTCAGACGAATACAAGTCATTCAGCTCCTC ATTTGTAA
AA sequence Show only first row Show all	>Potri.007G075200.3 pacid=42765147 polypeptide=Potri.007G075200.3.p locus=Potri.007G075200 ID=Potri.007G075200.3.v4.1 annot-version=v4.1 MKTSQKQVIGIPIRTASYAVEKMPRLLLENAEQRYIPSPANKALACKQNKIDSMLKRMNKLGKKADKFAHGIREHMRLGTKITETLVGKLSLGARILQVG GVKKVFRQLFSVSEGERLLRVCQCYLSTTAGPIAGLLFISTEKLAFCSERSIKLSSPEGKLVRIHYKVVVPLRKIRTANQSENAKKPSEKYIEIVTVDDF DFWFMGFFSYQKAFKSLQQAITQTQTNTSHSAPHL

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G08350			GRAM domain-containing protein...		Potri.007G075200 [exp]	0	1
AT5G08350			GRAM domain-containing protein...		Potri.007G075700 [exp]	1.00	0.9567
AT3G14260			Protein of unknown function (D...		Potri.003G072200 [exp]	2.82	0.8411
AT1G77020			DNAJ heat shock N-terminal dom...		Potri.002G074600 [exp]	12.00	0.7950
AT2G37590	DOF	AtDof2. 4, ATDO...	DNA binding with one finger 2....		Potri.010G205400 [exp]	16.12	0.8270
AT2G41540		GPDHC1	6-phosphogluconate dehydrogena...		Potri.006G046900 [exp]	23.49	0.7796
AT3G47800			Galactose mutarotase-like supe...		Potri.004G129700 [exp]	29.29	0.7752
AT5G53880			unknown protein		Potri.011G117001 [exp]	29.69	0.7545
AT5G52900		MAKR6	MEMBRANE-ASSOCIATED KINASE REG...		Potri.014G091500 [exp]	34.59	0.7221
AT1G20650		ASG5	ALTERED SEED GERMINATION 5, Pr...		Potri.002G009300 [exp]	35.55	0.7623
AT5G20510	Alfin	AL5	alfin-like 5 (.1)		Potri.006G223500 [exp]	37.14	0.7200

Compare expression of checked genes

Potri.007G075200 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.