Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G19970 514 / 0 alpha/beta-Hydrolases superfamily protein (.1) AT2G18245 227 / 5e-70 alpha/beta-Hydrolases superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.005G089000 [exp] 691 / 0 AT3G19970 509 / 5e-180 alpha/beta-Hydrolases superfamily protein (.1) Potri.007G023000 [exp] 236 / 2e-73 AT2G18245 330 / 2e-110 alpha/beta-Hydrolases superfamily protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10010171 [exp] 523 / 0 AT3G19970 528 / 0.0 alpha/beta-Hydrolases superfamily protein (.1) Lus10017376 [exp] 513 / 0 AT3G19970 534 / 0.0 alpha/beta-Hydrolases superfamily protein (.1) Lus10026001 [exp] 214 / 5e-65 AT2G18245 283 / 2e-92 alpha/beta-Hydrolases superfamily protein (.1) Lus10028314 [exp] 179 / 7e-53 AT2G18245 216 / 1e-67 alpha/beta-Hydrolases superfamily protein (.1) Lus10041762 [exp] 91 / 8e-22 AT2G18245 102 / 1e-26 alpha/beta-Hydrolases superfamily protein (.1) Lus10014294 [exp] 0 / 1 AT2G18245 195 / 2e-71 alpha/beta-Hydrolases superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0028 [poplar] [flax] AB_hydrolase PF05705 [poplar] [flax] DUF829 Eukaryotic protein of unknown function (DUF829)
Representative CDS sequence Show only first row Show all	>Potri.007G075400.3 pacid=42766341 polypeptide=Potri.007G075400.3.p locus=Potri.007G075400 ID=Potri.007G075400.3.v4.1 annot-version=v4.1 ATGGGCTCCTTGTCTGGAATCATTCAAAGACCAGTGATCGCAGCAGCTGTGGCAGCTTTAGCTTCTGTTTCTGTTGAATTTTCCGATGAACTCCAATCTT TTAGATCATCTGATACTTGTTCTACCTCCGAACAGTCAAGTTCTTTATTGTCTAATTCAGTTCAGGATTCAAAATTTTCTTGGGTTTCTCACATTTCAGT TTCTAAGCTTGCAAATTTGTCATTCGTAACTAGGAATCGGGTGCCTGTTCCTAATGTTAGCTTCCCAGTTCTGGATGTGAGCCAAAATTTTGTTCCCAAT ACTTTAGGCTCTTCTGTTGCTTCCTCTCCTTTTCTTGTTAATTTGTATCGGTCTGCGGAGTTGGCCAAAGGGCCAAAATCAAGTGCATTTAAAACCACCA CTATTCCTCCATCCTCTCCTGATATATTATATAGATGGCATTTGCCCGAGCTGAGTACTATTGATGTTTCTGGATCATCTGATTGTTCATCAGAAAAGTC TAGGACAGTGGTAGTTTTGCTAGGGTGGTTAGGATCAAAGCAGAAACATCTAAATAAATATGCTGAGTGGTATACTTCGAGGGGATTCCATGTCATTACT TTTACTTTTCCACTGGCCGAGATTCTTAGTTACCAAGTTGGTGGGAAAACAGAACAGGACATTGACTTGCTTGCGACCCACCTGGCTGATTGGTTGGAAG AGGATGGAAAGAACTTAGTTTTCCACACTTTCAGCAATACTGGATGGTTAACTTATGGAGCTATACTTGAGAAGTTTCAGAAGCAGGATCTTTCTTTAAT GGGAAGGATCAGGGGCTGCATCGTGGATTCTGCCCCTGTTGCTGCCCCTGACCCTCAGGTTTGGGCATCAGGTTTCTCTGCAGCTTTTCTGAAAAAGCAT AGTGTTGCTACGAAAGTGCATGCAAGCTCAAAAGAGTCAGATATGGAGGTATTAGTTGGCAGCAAAACATTCATGGAACCCAAGCCTGCCATAGCTGAAT CAGCTTTATTAGCTGTTCTGGAGAAGTTCTTTGATGTGATTTTGAACATTCCTATGGTGAACAGGAGGCTCTCGGATGTGCTAAGCTTATTATCATCAGG ACAACCAAGCTGTCCACAGTTGTATATATATAGCTCTGCAGATAGAGTCATTCCTGCAGGGTCTGTGGAATCATTTATAGAGAAGCAGCGAAGAGCTGGG CATGAGGTTAGGGCCTGCAACTTTGTGTTCACACCTCATGTTGATCATTTCAGAAATGATCCAAAACTGTATACTACTCAGCTCAGCCAGTTTTTAGATG ACTATGTGCTTACTCATTGCAAGCATTCTTAA
AA sequence Show only first row Show all	>Potri.007G075400.3 pacid=42766341 polypeptide=Potri.007G075400.3.p locus=Potri.007G075400 ID=Potri.007G075400.3.v4.1 annot-version=v4.1 MGSLSGIIQRPVIAAAVAALASVSVEFSDELQSFRSSDTCSTSEQSSSLLSNSVQDSKFSWVSHISVSKLANLSFVTRNRVPVPNVSFPVLDVSQNFVPN TLGSSVASSPFLVNLYRSAELAKGPKSSAFKTTTIPPSSPDILYRWHLPELSTIDVSGSSDCSSEKSRTVVVLLGWLGSKQKHLNKYAEWYTSRGFHVIT FTFPLAEILSYQVGGKTEQDIDLLATHLADWLEEDGKNLVFHTFSNTGWLTYGAILEKFQKQDLSLMGRIRGCIVDSAPVAAPDPQVWASGFSAAFLKKH SVATKVHASSKESDMEVLVGSKTFMEPKPAIAESALLAVLEKFFDVILNIPMVNRRLSDVLSLLSSGQPSCPQLYIYSSADRVIPAGSVESFIEKQRRAG HEVRACNFVFTPHVDHFRNDPKLYTTQLSQFLDDYVLTHCKHS

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT3G19970			alpha/beta-Hydrolases superfam...		Potri.007G075400 [exp]	0	1
AT1G17420		ATLOX3, LOX3	Arabidopsis thaliana lipoxygen...		Potri.001G167700 [exp]	10.53	0.8593	LOX3.1
					Potri.003G101900 [exp]	12.64	0.8398
AT2G13650		GONST1	golgi nucleotide sugar transpo...		Potri.005G062900 [exp]	12.80	0.8003
AT2G27480			Calcium-binding EF-hand family...		Potri.009G163600 [exp]	13.85	0.8253
AT3G25780		AOC3, AOC2	allene oxide cyclase 3 (.1)		Potri.008G117300 [exp]	14.07	0.8515
AT1G27730	C2H2ZnF	ZAT10, STZ	salt tolerance zinc finger (.1...		Potri.014G017300 [exp]	16.73	0.8424	SCOF.2
AT2G46080			unknown protein		Potri.008G085600 [exp]	18.70	0.8363
AT4G21865			unknown protein		Potri.008G172000 [exp]	20.71	0.8467
AT5G45190			Cyclin family protein (.1.2)		Potri.002G032300 [exp]	21.74	0.7988
AT4G33985			Protein of unknown function (D...		Potri.007G043900 [exp]	23.66	0.7771

Compare expression of checked genes

Potri.007G075400 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.