Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G23340 291 / 3e-97 RNI-like superfamily protein (.1) AT1G21410 80 / 5e-17 SKP2A F-box/RNI-like superfamily protein (.1) AT2G25490 77 / 1e-15 FBL6, EBF1 EIN3-binding F box protein 1 (.1) AT4G15475 73 / 2e-14 F-box/RNI-like superfamily protein (.1) AT1G77000 72 / 4e-14 ATSKP2;2, SKP2B ARABIDOPSIS HOMOLOG OF HOMOLOG OF HUMAN SKP2 2, RNI-like superfamily protein (.1.2) AT5G25350 71 / 8e-14 EBF2 EIN3-binding F box protein 2 (.1) AT3G07550 65 / 8e-12 RNI-like superfamily protein (.1.2) AT3G58530 63 / 5e-11 RNI-like superfamily protein (.1) AT2G06040 63 / 6e-11 unknown protein AT5G01720 57 / 6e-09 RNI-like superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.005G088800 [exp] 350 / 2e-120 AT5G23340 567 / 0.0 RNI-like superfamily protein (.1) Potri.005G185700 [exp] 72 / 4e-14 AT1G77000 523 / 0.0 ARABIDOPSIS HOMOLOG OF HOMOLOG OF HUMAN SKP2 2, RNI-like superfamily protein (.1.2) Potri.017G056400 [exp] 72 / 4e-14 AT3G07550 438 / 2e-153 RNI-like superfamily protein (.1.2) Potri.018G027700 [exp] 71 / 1e-13 AT2G25490 820 / 0.0 EIN3-binding F box protein 1 (.1) Potri.013G013100 [exp] 69 / 7e-13 AT5G27920 631 / 0.0 F-box family protein (.1) Potri.006G254100 [exp] 66 / 5e-12 AT2G25490 795 / 0.0 EIN3-binding F box protein 1 (.1) Potri.005G022600 [exp] 66 / 8e-12 AT5G27920 626 / 0.0 F-box family protein (.1) Potri.006G105400 [exp] 65 / 1e-11 AT5G01720 712 / 0.0 RNI-like superfamily protein (.1) Potri.016G128400 [exp] 63 / 7e-11 AT5G01720 712 / 0.0 RNI-like superfamily protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10040998 [exp] 306 / 9e-103 AT5G23340 595 / 0.0 RNI-like superfamily protein (.1) Lus10013444 [exp] 304 / 4e-102 AT5G23340 591 / 0.0 RNI-like superfamily protein (.1) Lus10012764 [exp] 83 / 2e-17 AT4G15475 813 / 0.0 F-box/RNI-like superfamily protein (.1) Lus10041087 [exp] 79 / 1e-16 AT3G07550 417 / 2e-145 RNI-like superfamily protein (.1.2) Lus10036412 [exp] 79 / 2e-16 AT3G07550 417 / 4e-145 RNI-like superfamily protein (.1.2) Lus10028645 [exp] 75 / 5e-15 AT1G21410 520 / 0.0 F-box/RNI-like superfamily protein (.1) Lus10029869 [exp] 75 / 7e-15 AT5G27920 441 / 5e-150 F-box family protein (.1) Lus10002913 [exp] 72 / 5e-14 AT2G25490 760 / 0.0 EIN3-binding F box protein 1 (.1) Lus10018942 [exp] 71 / 1e-13 AT1G21410 513 / 0.0 F-box/RNI-like superfamily protein (.1) Lus10002014 [exp] 71 / 2e-13 AT2G25490 766 / 0.0 EIN3-binding F box protein 1 (.1)
PFAM info
Representative CDS sequence Show only first row Show all	>Potri.007G075600.2 pacid=42765760 polypeptide=Potri.007G075600.2.p locus=Potri.007G075600 ID=Potri.007G075600.2.v4.1 annot-version=v4.1 ATGGCACCCCAGGAACATTGTGTTCGAATTGTCACTACGGTACCTCCATCCCTGGGCGAGCTGAGACAAATATTATCAAAGCTAGAGAATGATAAGGACA AGGAGATATTTGGGTTGGTTTCCAAGAGATGGCTAAGGTTGCAGAGTACAGAAAGGAAGAAACTTGCTGCTAGAGCTGGACCTCACATGCTTCAAAAGAT GGCTGCTAGATGCTTAAGAGTCCTTAATTTGCAGCATTGTAAAGGTATTTCAGATAAGGGGTTATTGATCCTGCATCTTGATGGATGCAAATTTGTTACC GATAAAGTACTAAAAGCTCTTTCTAAGAACTGTCCAAATCTACAAGAGTTGGGCCTGCAAGGTTGCACCAGTGTGACTGACTGTGGACTTGCAGTTCTTG TGAGTGGATGTCGGTGGATCCACTTCTTAGATATCAATAAATGCAGTAATGTGGGGGACAGTGGGATTTCCAATGTTTCAGAGGCATGCTCATCTTCCCT GAAGACACTAAAGTTGTTGGATTGCTTTAGAGTTGGGGATGAGTCTATTTTATCTTTGGCCAGGTTTTGCAAAAATCTGGAAACCTTTATCATTGGTGGT TGCCGAGACATCTCTGACGACCGTTTGAAGAACTTGCAAATGGACTGCTGTGTCCTTGCTGAGTGCAGAAACCTGGAGGCTCCTGATATTGGGTCCTGTC CATACATTACCAAGTCAGGTTGTGATGAAGCTGGATTGCAGTTCCCTGATTGCTGTAAAGTGAATTACACAGGAAGTCTAAATGAGCCAGATGTTCTACT ATGGGATCCTCGATTTCAACAGTTTAGAATTCTGTGGATATTCATTCCGCGATAA
AA sequence Show only first row Show all	>Potri.007G075600.2 pacid=42765760 polypeptide=Potri.007G075600.2.p locus=Potri.007G075600 ID=Potri.007G075600.2.v4.1 annot-version=v4.1 MAPQEHCVRIVTTVPPSLGELRQILSKLENDKDKEIFGLVSKRWLRLQSTERKKLAARAGPHMLQKMAARCLRVLNLQHCKGISDKGLLILHLDGCKFVT DKVLKALSKNCPNLQELGLQGCTSVTDCGLAVLVSGCRWIHFLDINKCSNVGDSGISNVSEACSSSLKTLKLLDCFRVGDESILSLARFCKNLETFIIGG CRDISDDRLKNLQMDCCVLAECRNLEAPDIGSCPYITKSGCDEAGLQFPDCCKVNYTGSLNEPDVLLWDPRFQQFRILWIFIPR

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G23340			RNI-like superfamily protein (...		Potri.007G075600 [exp]	0	1
AT5G07900			Mitochondrial transcription te...		Potri.001G034500 [exp]	1.00	0.9291
AT3G18640	C3HZnF		Zinc finger C-x8-C-x5-C-x3-H t...		Potri.005G061100 [exp]	3.46	0.8829
AT2G03820			nonsense-mediated mRNA decay N...		Potri.017G137500 [exp]	3.87	0.8618
AT1G12700		RPF1	RNA processing factor 1, ATP b...		Potri.005G050240 [exp]	3.87	0.8855
AT5G17900			microfibrillar-associated prot...		Potri.013G065600 [exp]	6.32	0.8848
					Potri.002G146750 [exp]	6.70	0.8765
AT5G60250			zinc finger (C3HC4-type RING f...		Potri.009G150100 [exp]	7.74	0.8536
AT1G04570			Major facilitator superfamily ...		Potri.010G063800 [exp]	7.74	0.8755
AT3G62470			Pentatricopeptide repeat (PPR)...		Potri.014G121400 [exp]	10.24	0.8845
AT1G21740			Protein of unknown function (D...		Potri.005G070200 [exp]	10.95	0.8432

Compare expression of checked genes

Potri.007G075600 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.