Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G08580 536 / 0 Calcium-binding EF hand family protein (.1) AT4G27790 196 / 1e-59 Calcium-binding EF hand family protein (.1) AT5G21274 52 / 6e-08 ACAM-6, CAM6 calmodulin 6 (.1) AT3G56800 52 / 6e-08 ACAM-3, CAM3 calmodulin 3 (.1) AT2G27030 52 / 6e-08 CAM5, CAM2, ACAM-2, ACAM-5 calmodulin 5 (.1.2.3) AT2G41110 52 / 6e-08 ACAM-2, ATCAL5, CAM2 calmodulin 2 (.1.2) AT3G43810 52 / 6e-08 CAM7 calmodulin 7 (.1) AT3G59440 52 / 1e-07 Calcium-binding EF-hand family protein (.1) AT5G37780 50 / 2e-07 ACAM-1, TCH1, CAM1 TOUCH 1, calmodulin 1 (.1.2.3) AT1G66410 50 / 2e-07 ACAM-4, CAM4 calmodulin 4 (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.005G087600 [exp] 665 / 0 AT5G08580 539 / 0.0 Calcium-binding EF hand family protein (.1) Potri.015G010300 [exp] 182 / 3e-54 AT4G27790 321 / 1e-108 Calcium-binding EF hand family protein (.1) Potri.016G024700 [exp] 52 / 6e-08 AT3G43810 300 / 2e-106 calmodulin 7 (.1) Potri.009G021500 [exp] 52 / 6e-08 AT3G43810 300 / 2e-106 calmodulin 7 (.1) Potri.006G026700 [exp] 52 / 6e-08 AT3G43810 300 / 2e-106 calmodulin 7 (.1) Potri.001G222200 [exp] 52 / 1e-07 AT2G27030 304 / 6e-107 calmodulin 5 (.1.2.3) Potri.012G041000 [exp] 51 / 1e-07 AT5G37780 283 / 9e-100 TOUCH 1, calmodulin 1 (.1.2.3) Potri.015G032600 [exp] 51 / 1e-07 AT5G37780 284 / 3e-100 TOUCH 1, calmodulin 1 (.1.2.3) Potri.007G057600 [exp] 52 / 3e-07 AT5G66210 869 / 0.0 calcium-dependent protein kinase 28 (.1.2.3.4)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10010165 [exp] 482 / 1e-171 AT5G08580 435 / 5e-153 Calcium-binding EF hand family protein (.1) Lus10017370 [exp] 477 / 9e-169 AT5G08580 437 / 5e-153 Calcium-binding EF hand family protein (.1) Lus10022381 [exp] 176 / 7e-52 AT4G27790 291 / 3e-97 Calcium-binding EF hand family protein (.1) Lus10005911 [exp] 69 / 3e-13 AT4G27790 133 / 3e-37 Calcium-binding EF hand family protein (.1) Lus10027701 [exp] 58 / 2e-09 AT2G43290 153 / 2e-46 multicopy suppressors of snf4 deficiency in yeast 3, Calcium-binding EF-hand family protein (.1) Lus10027283 [exp] 52 / 7e-08 AT2G27030 300 / 2e-106 calmodulin 5 (.1.2.3) Lus10038981 [exp] 52 / 7e-08 AT2G27030 300 / 2e-106 calmodulin 5 (.1.2.3) Lus10037423 [exp] 52 / 7e-08 AT2G27030 300 / 2e-106 calmodulin 5 (.1.2.3) Lus10041288 [exp] 52 / 7e-08 AT2G27030 300 / 2e-106 calmodulin 5 (.1.2.3) Lus10030986 [exp] 48 / 2e-06 AT1G32250 219 / 3e-74 Calcium-binding EF-hand family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0220 [poplar] [flax] EF_hand PF13499 [poplar] [flax] EF-hand_7 EF-hand domain pair
Representative CDS sequence Show only first row Show all	>Potri.007G076300.1 pacid=42766289 polypeptide=Potri.007G076300.1.p locus=Potri.007G076300 ID=Potri.007G076300.1.v4.1 annot-version=v4.1 ATGGGCAAGACCTCAATCATCATGTACATAACTATAGCTCTACTTTTTCTCTTACTAGTAACTCATACTCCAAAGAAACCATCAAACCTCCGCAACCGCC GCATCAAGATCCGGAATGACTTCGCCTTCGACCCCCGCCACCACCACCATGAACCGGTGCCTTTTGATCCTCTTGTTGCTGACATTGAACGCAAACGTGA AGACAAGGAATGGGAGAGACAGTACTTGGAAAATTCACATCCTGAACTTGTTCATCACTCGGCTGCTCCTGGTCACGAGTCACAGCCCGAGGTGGATGAT TTTATGGATGCTGAAGATTATTTGAATGATGAAGAGAAATTTAATGTTACTAATAGGTTGTTGGTGCTATTTCCAAAGATTGACATGGAACCAGTTGATG GTTATTTGAGTGAACATGAATTGACTGAGTGGAGTTTGAAACAATCTGAGAAGGAAGTTATGCATAGGACTAAAAGGGAGATGGATGTTCATGATAAAAA TCATGATGGGCTCATTTCATTCGCTGAGTATGAGCCACCTAGTTGGGTACATAATTCAGATAAAAATTCTTTTGGCTATGATATGGGTTGGTGGAAAGAA GAACATTTCAATGCATCAGATGCAGATGGAGATGGTCTTCTGAACATAACCGAGTTCAATGACTTTCAACATCCTGCTGACAGCAAAAACCCAAAGCTAC TTCAATGGTTGTGCAAGGAGGAAGTAAGGGAAAGAGATTCTGACAAAGATGGGAAGGTTAACTTTCAAGAGTTTTTCCACGGGCTATTTGACTCTGTGAG AAATTATGATGAAGAAGGTCATAATTCATCACATCTGTCGGATGATTCTGTGGAGGCCCCTGCTAAGAAGTTGTTCAATGAGCTGGACAAAGATGCCGAC GGATTCTTGTCAGATGTAGAGTTGCTACATATAATTGGGAAACTTCATCCATCAGAGCGTTACTATGCAAAACAACAAGCTGATTACATCTTGTCACAGT CAGATACGGACAAAGATGGACGGCTATCATTGACAGAGATGATTGAGAACCCATACGTATTTTACAGTGCTATTTTCAGTGATGAAGATAATGAGGACGA CATACATGATGAGTTCCGTTAA
AA sequence Show only first row Show all	>Potri.007G076300.1 pacid=42766289 polypeptide=Potri.007G076300.1.p locus=Potri.007G076300 ID=Potri.007G076300.1.v4.1 annot-version=v4.1 MGKTSIIMYITIALLFLLLVTHTPKKPSNLRNRRIKIRNDFAFDPRHHHHEPVPFDPLVADIERKREDKEWERQYLENSHPELVHHSAAPGHESQPEVDD FMDAEDYLNDEEKFNVTNRLLVLFPKIDMEPVDGYLSEHELTEWSLKQSEKEVMHRTKREMDVHDKNHDGLISFAEYEPPSWVHNSDKNSFGYDMGWWKE EHFNASDADGDGLLNITEFNDFQHPADSKNPKLLQWLCKEEVRERDSDKDGKVNFQEFFHGLFDSVRNYDEEGHNSSHLSDDSVEAPAKKLFNELDKDAD GFLSDVELLHIIGKLHPSERYYAKQQADYILSQSDTDKDGRLSLTEMIENPYVFYSAIFSDEDNEDDIHDEFR

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G08580			Calcium-binding EF hand family...		Potri.007G076300 [exp]	0	1
AT4G27720			Major facilitator superfamily ...		Potri.012G020500 [exp]	2.82	0.8171
AT3G56110		PRA1.B1	prenylated RAB acceptor 1.B1 (...		Potri.010G183300 [exp]	5.29	0.8000
AT4G17890		UBP20, AGD8	ARF-GAP domain 8 (.1.2)		Potri.003G092300 [exp]	10.63	0.8361	UBP20.1
AT3G25500		AHF1, AFH1, ATF...	ARABIDOPSIS THALIANA FORMIN HO...		Potri.007G140200 [exp]	10.90	0.8097
AT5G08580			Calcium-binding EF hand family...		Potri.005G087600 [exp]	15.68	0.8318
AT4G34660			SH3 domain-containing protein ...		Potri.009G123200 [exp]	17.49	0.8044
AT2G36010	E2F_DP	ATE2FA, E2F3	E2F transcription factor 3 (.1...		Potri.016G072300 [exp]	17.49	0.7434	E2Fa2-1,E2F3.2
AT3G48860			unknown protein		Potri.012G105400 [exp]	21.49	0.8016
AT1G78300		14-3-3OMEGA, GF...	14-3-3 PROTEIN G-BOX FACTOR14 ...		Potri.005G162400 [exp]	23.30	0.8276	CHI.2
AT4G00740		QUA3	QUASIMODO 3, S-adenosyl-L-meth...		Potri.014G075300 [exp]	35.32	0.7507

Compare expression of checked genes

Potri.007G076300 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.