Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol	ATH.2
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G64740 1790 / 0 PRC1, IXR2, E112, CESA6 PROCUSTE 1, ISOXABEN RESISTANT 2, cellulose synthase 6 (.1) AT4G39350 1759 / 0 ATH-A, CESA2, ATCESA2 cellulose synthase A2 (.1) AT5G09870 1749 / 0 CESA5 cellulose synthase 5 (.1) AT2G21770 1742 / 0 CESA09, CESA9 cellulose synthase A9 (.1) AT5G17420 1369 / 0 ATCESA7, MUR10, IRX3 MURUS 10, IRREGULAR XYLEM 3, CELLULOSE SYNTHASE CATALYTIC SUBUNIT 7, Cellulose synthase family protein (.1) AT4G32410 1364 / 0 AtCESA1, RSW1, CESA1 RADIALLY SWOLLEN 1, cellulose synthase 1 (.1) AT5G05170 1357 / 0 IXR1, CEV1, ATH-B, ATCESA3, CESA3 ISOXABEN RESISTANT 1, CONSTITUTIVE EXPRESSION OF VSP 1, CELLULOSE SYNTHASE 3, Cellulose synthase family protein (.1) AT2G25540 1335 / 0 CESA10 cellulose synthase 10 (.1) AT3G03050 796 / 0 RHD7, ATCSLD3, KJK, CSLD3 ROOT HAIR DEFECTIVE 7, KOJAK, CELLULOSE SYNTHASE LIKE D3, cellulose synthase-like D3 (.1) AT5G16910 790 / 0 ATCSLD2 cellulose-synthase like D2 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.005G087500 [exp] 1975 / 0 AT5G64740 1785 / 0.0 PROCUSTE 1, ISOXABEN RESISTANT 2, cellulose synthase 6 (.1) Potri.005G194200 [exp] 1779 / 0 AT5G64740 1665 / 0.0 PROCUSTE 1, ISOXABEN RESISTANT 2, cellulose synthase 6 (.1) Potri.002G066600 [exp] 1771 / 0 AT4G39350 1655 / 0.0 cellulose synthase A2 (.1) Potri.013G019800 [exp] 1555 / 0 AT5G64740 1512 / 0.0 PROCUSTE 1, ISOXABEN RESISTANT 2, cellulose synthase 6 (.1) Potri.005G027600 [exp] 1555 / 0 AT5G64740 1506 / 0.0 PROCUSTE 1, ISOXABEN RESISTANT 2, cellulose synthase 6 (.1) Potri.018G103900 [exp] 1400 / 0 AT5G17420 1730 / 0.0 MURUS 10, IRREGULAR XYLEM 3, CELLULOSE SYNTHASE CATALYTIC SUBUNIT 7, Cellulose synthase family protein (.1) Potri.006G181900 [exp] 1395 / 0 AT5G17420 1730 / 0.0 MURUS 10, IRREGULAR XYLEM 3, CELLULOSE SYNTHASE CATALYTIC SUBUNIT 7, Cellulose synthase family protein (.1) Potri.018G029400 [exp] 1391 / 0 AT4G32410 1898 / 0.0 RADIALLY SWOLLEN 1, cellulose synthase 1 (.1) Potri.006G251900 [exp] 1389 / 0 AT4G32410 1899 / 0.0 RADIALLY SWOLLEN 1, cellulose synthase 1 (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10002939 [exp] 1847 / 0 AT5G64740 1870 / 0.0 PROCUSTE 1, ISOXABEN RESISTANT 2, cellulose synthase 6 (.1) Lus10041063 [exp] 1845 / 0 AT5G64740 1868 / 0.0 PROCUSTE 1, ISOXABEN RESISTANT 2, cellulose synthase 6 (.1) Lus10003526 [exp] 1840 / 0 AT5G64740 1863 / 0.0 PROCUSTE 1, ISOXABEN RESISTANT 2, cellulose synthase 6 (.1) Lus10006161 [exp] 1732 / 0 AT5G64740 1734 / 0.0 PROCUSTE 1, ISOXABEN RESISTANT 2, cellulose synthase 6 (.1) Lus10007538 [exp] 1374 / 0 AT5G05170 1772 / 0.0 ISOXABEN RESISTANT 1, CONSTITUTIVE EXPRESSION OF VSP 1, CELLULOSE SYNTHASE 3, Cellulose synthase family protein (.1) Lus10012198 [exp] 1371 / 0 AT5G05170 1774 / 0.0 ISOXABEN RESISTANT 1, CONSTITUTIVE EXPRESSION OF VSP 1, CELLULOSE SYNTHASE 3, Cellulose synthase family protein (.1) Lus10028597 [exp] 1367 / 0 AT4G32410 1922 / 0.0 RADIALLY SWOLLEN 1, cellulose synthase 1 (.1) Lus10018902 [exp] 1358 / 0 AT4G32410 1915 / 0.0 RADIALLY SWOLLEN 1, cellulose synthase 1 (.1) Lus10039607 [exp] 1348 / 0 AT5G05170 1820 / 0.0 ISOXABEN RESISTANT 1, CONSTITUTIVE EXPRESSION OF VSP 1, CELLULOSE SYNTHASE 3, Cellulose synthase family protein (.1) Lus10003525 [exp] 936 / 0 AT5G64740 912 / 0.0 PROCUSTE 1, ISOXABEN RESISTANT 2, cellulose synthase 6 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0110 [poplar] [flax] GT-A PF13632 [poplar] [flax] Glyco_trans_2_3 Glycosyl transferase family group 2 CL0229 [poplar] [flax] RING PF14569 [poplar] [flax] zf-UDP Zinc-binding RING-finger
Representative CDS sequence Show only first row Show all	>Potri.007G076500.1 pacid=42765308 polypeptide=Potri.007G076500.1.p locus=Potri.007G076500 ID=Potri.007G076500.1.v4.1 annot-version=v4.1 ATGAACACCGGGGGTCGACTCATTGCTGGTTCTCACAACAGGAACGAGTTTGTCCTCATAAATGCCGATGAAAATGCAAGAATTAAGTCGGTTCAAGAAT TGAGCGGACAAGTGTGTCATATATGCGGGGATGAGATTGAGATTACAGTGGATGGAGAGCCATTTGTTGCCTGCAATGAATGTGCTTTCCCTGTGTGCCG GCCCTGCTATGAATATGAGAGAAGAGAGGGAAATCAAGCTTGCCCTCAATGCAAAACCAGATACAAGCGCCTCAAAGGTAGTCCCAGGGTTGAGGGTGAT GAGGAAGAAGATGATATTGATGATTTGGAACATGAGTTTGATTATGGAAATTTTGATGGTTTAAGCCCAGAACAAGTTGCAGAGGCAATGCTCTCTTCAC GCATGAACACTGGCCGTGCTTCTCACTCTAATATATCTGGAATCCCCACACATGGGGAGCTTGATTCCTCTCCCCTTAACTCTAAAATTCCTCTTTTAAC TTATGGAGAGGAGGATACAGAGATTTCTTCTGACCGACATGCACTTATTGTTCCACCGAGTCATGGAAATAGATTTCATCCGATTTCTTTTCCTGATCCT TCTATACCTTTAGCTCAACCAAGACCAATGGTTCCAAAGAAAGACATTGCAGTGTATGGGTATGGGAGTGTGGCATGGAAGGACAGAATGGAGGATTGGA AGAAAAGGCAGAATGACAAACTTCAGGTTGTTAAGCATGAAGGAGGACATGACAATGGAAACTTTGAAGGGGATGAATTGGATGATCCTGATTTGCCCAT GATGGATGAGGGCAGGCAGCCACTTTCAAGGAAGTTACCCATTCCCTCAAGCAAGATAAACCCGTACAGAATGATAATCATTCTACGTCTTGTAGTTGTT GGCTTATTTTTTCACTATAGAATTCTCCACCCAGTCAATGATGCGTATGGTTTGTGGTTGACATCAGTAATATGTGAAATATGGTTTGCAGTATCATGGA TTCTAGACCAGTTTCCAAAATGGTATCCTATAGAACGGGAAACATACCTTGATCGGCTGTCACTGAGGTATGAAAAAGAAGGGAAACCATCTGAGTTAGC CAGTGTAGATGTTTTCGTAAGTACAGTAGACCCTATGAAAGAACCTCCACTGATCACTGCGAACACTGTCCTCTCTATTCTCGCGGTTGATTATCCTGTG GATAAAGTTGCATGCTACGTGTCAGATGATGGTGCTGCCATGCTCACATTTGAAGCTCTCTCTGAGACATCTGAATTTGCTAGGAAATGGGTTCCGTTCT GTAAAAAATTTAATATTGAGCCCCGAGCCCCTGAGTGGTATTTTTCTCAGAAAATGGACTATTTGAAAAATAAAGTTCATCCAGCATTTGTCAGGGAAAG GCGTGCCATGAAGAGAGAATATGAAGAATTCAAAGTGAAGATAAATGGGCTGGTTGCCACCGCGCAAAAGGTTCCAGAAGATGGTTGGACAATGCAAGAT GGAACTCCATGGCCTGGAAACAATGTACGAGACCATCCTGGCATGATTCAGGTGTTCCTTGGACAAAGTGGTGTTCGTGACGTGGAAGGAAACGAGTTAC CTCGTTTGGTCTATGTTTCTCGTGAGAAGAGACCAGGATTTGAACACCATAAAAAGGCTGGGGCCATGAATGCACTGATGCGGGTCACTGCAGTTCTGTC AAATGCCCCCTATCTTCTGAATGTTGACTGTGACCATTATATTAACAATAGCAGAGCACTTAGAGAAGCAATGTGTTTCTTGATGGATCCAACATCAGGA AAAAAAGTCTGTTATGTGCAGTTTCCTCAACGATTTGATGGCATTGATCGTCATGATAGATACTCGAATCGGAATGTTGTATTCTTTGATATCAATATGA AAGGATTAGATGGCTTACAAGGACCAATATATGTTGGAACTGGGTGTGTTTTCCGGAGGCAAGCTCTTTATGGTTATGATGCACCTGTAAAGAAGAGGCC CCCTGGCAAGACCTGCAACTGCTGGCCTAAATGGTGTTGTCTATTCTGTGGGTCCAGAAAAAACAAGAAATCGAAGCAAAAGAAGGAGAAGAAGAAGTCA AAGAACAGGGAAGCATCAAAGCAGATACATGCTCTTGAAAATATCGAAGAAGGAATTGAAGAATCAACTTCTGAAAAATCTTCCGAAACATCCCAAATGA AGTTGGAAAAGAAGTTTGGGCAATCTCCAGTGTTTGTAGCTTCCACTCTTCTGGAGAATGGTGGAGTTCCTCGAGATGCGAGTCCTGCATCACTGTTGAG AGAGGCCATTCAAGTTATCAGCTGTGGTTATGAAGATAAGACAGAATGGGGCAAGGAAGTTGGCTGGATATATGGTTCTGTAACAGAAGATATCCTGACA GGATTCAAGATGCACTGCCATGGGTGGCGGTCTGTGTACTGCATACCTAAGCGGCCTGCATTTAAGGGGTCGGCTCCTATTAACCTCTCAGATCGTCTAC ACCAGGTTCTTCGATGGGCCCTTGGTTCTGTCGAGATTTTCTTTAGTAGACACTGTCCAATTTGGTATGGTTATGGGGGTGGATTGAAGTGGCTGGAACG ATTTTCTTACATAAACTCTGTTGTGTATCCTTGGACATCCATCCCCTTGCTTGTTTACTGTACACTACCAGCTATATGCCTTCTCACTGGGAAATTCATT GTTCCTGAGATCAGTAATTATGCCAGTATTGTGTTCATGGCCCTCTTCATATCTATAGCTGCAACTGGTATCCTCGAGATGCAGTGGGGTGGTGTTGGAA TAGATGACTGGTGGAGAAATGAGCAATTTTGGGTGATTGGAGGTGCTTCGGCACACCTTTTTGCTCTCTTCCAGGGTTTGCTCAAGGTTTTGGCAGGTGT CAGCACAAACTTCACTGTGACATCAAAAGCAGCGGATGACGGAGAATTCTCAGAGCTTTACCTATTCAAGTGGACATCACTGTTGATCCCTCCTACAACG TTGTTGATCATGAACATAGTGGGTGTTGTGGTTGGGGTCTCAGACGCCATCAATAATGGGTATGATTCATGGGGTCCATTGTTTGGGAGGCTGTTTTTCG CCTTGTGGGTCATCATCCACCTCTACCCATTCCTCAAGGGGCTTCTTGGGAAACAAGATCGCATGCCCACCATCATTTTGGTATGGTCAATTCTGCTGGC TTCAATCCTAACTCTTTTGTGGGTTCGCATAAACCCATTTGTGTCCAAAGGTGGTCCTGTTCTGGAACTGTGCGGATTGAATTGTGATTAG
AA sequence Show only first row Show all	>Potri.007G076500.1 pacid=42765308 polypeptide=Potri.007G076500.1.p locus=Potri.007G076500 ID=Potri.007G076500.1.v4.1 annot-version=v4.1 MNTGGRLIAGSHNRNEFVLINADENARIKSVQELSGQVCHICGDEIEITVDGEPFVACNECAFPVCRPCYEYERREGNQACPQCKTRYKRLKGSPRVEGD EEEDDIDDLEHEFDYGNFDGLSPEQVAEAMLSSRMNTGRASHSNISGIPTHGELDSSPLNSKIPLLTYGEEDTEISSDRHALIVPPSHGNRFHPISFPDP SIPLAQPRPMVPKKDIAVYGYGSVAWKDRMEDWKKRQNDKLQVVKHEGGHDNGNFEGDELDDPDLPMMDEGRQPLSRKLPIPSSKINPYRMIIILRLVVV GLFFHYRILHPVNDAYGLWLTSVICEIWFAVSWILDQFPKWYPIERETYLDRLSLRYEKEGKPSELASVDVFVSTVDPMKEPPLITANTVLSILAVDYPV DKVACYVSDDGAAMLTFEALSETSEFARKWVPFCKKFNIEPRAPEWYFSQKMDYLKNKVHPAFVRERRAMKREYEEFKVKINGLVATAQKVPEDGWTMQD GTPWPGNNVRDHPGMIQVFLGQSGVRDVEGNELPRLVYVSREKRPGFEHHKKAGAMNALMRVTAVLSNAPYLLNVDCDHYINNSRALREAMCFLMDPTSG KKVCYVQFPQRFDGIDRHDRYSNRNVVFFDINMKGLDGLQGPIYVGTGCVFRRQALYGYDAPVKKRPPGKTCNCWPKWCCLFCGSRKNKKSKQKKEKKKS KNREASKQIHALENIEEGIEESTSEKSSETSQMKLEKKFGQSPVFVASTLLENGGVPRDASPASLLREAIQVISCGYEDKTEWGKEVGWIYGSVTEDILT GFKMHCHGWRSVYCIPKRPAFKGSAPINLSDRLHQVLRWALGSVEIFFSRHCPIWYGYGGGLKWLERFSYINSVVYPWTSIPLLVYCTLPAICLLTGKFI VPEISNYASIVFMALFISIAATGILEMQWGGVGIDDWWRNEQFWVIGGASAHLFALFQGLLKVLAGVSTNFTVTSKAADDGEFSELYLFKWTSLLIPPTT LLIMNIVGVVVGVSDAINNGYDSWGPLFGRLFFALWVIIHLYPFLKGLLGKQDRMPTIILVWSILLASILTLLWVRINPFVSKGGPVLELCGLNCD

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G64740		PRC1, IXR2, E11...	PROCUSTE 1, ISOXABEN RESISTANT...		Potri.007G076500 [exp]	0	1	ATH.2
AT1G76160		SKS5	SKU5 similar 5 (.1)		Potri.005G247700 [exp]	4.89	0.7687
AT5G56170		LLG1	LORELEI-LIKE-GPI-ANCHORED PROT...		Potri.001G471500 [exp]	4.89	0.6973
AT1G45688			unknown protein		Potri.014G026800 [exp]	5.56	0.7887
AT3G24480			Leucine-rich repeat (LRR) fami...		Potri.018G075900 [exp]	6.48	0.7654
AT4G32410		AtCESA1, RSW1, ...	RADIALLY SWOLLEN 1, cellulose ...		Potri.018G029400 [exp]	10.00	0.7056	Pt-CESA1.2
AT3G54690		SETH3	Sugar isomerase (SIS) family p...		Potri.002G037400 [exp]	11.61	0.7360
AT5G09890			Protein kinase family protein ...		Potri.014G028900 [exp]	14.96	0.6955
AT3G30300			O-fucosyltransferase family pr...		Potri.017G101600 [exp]	15.16	0.6802
AT4G07960		ATCSLC12	CELLULOSE-SYNTHASE LIKE C12, C...		Potri.002G114200 [exp]	17.43	0.7405	Pt-ATCSLC12.1
AT3G60450			Phosphoglycerate mutase family...		Potri.002G141000 [exp]	26.19	0.6607

Compare expression of checked genes

Potri.007G076500 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.