Plant FIBer expression Database

Potri.007G076600 [POPLAR]


External link
JGI Phytozome v13PopgenieAspWood                  
Symbol
Arabidopsis homologues

No hit found

Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.005G087400
[exp]
99 / 7e-28 ND /
Flax homologues

No hit found
PFAM info
Representative CDS sequence
>Potri.007G076600.2 pacid=42765446 polypeptide=Potri.007G076600.2.p locus=Potri.007G076600 ID=Potri.007G076600.2.v4.1 annot-version=v4.1
ATGGCGGCCATGGCAATGGCAGAATTGAAAGCCTTGTGTGCAATCCATCCCAAGACCTTCACAGACTCGGACGTGGCTGCAGCACAACAACTCGTCCAGC
TAAGCGGTGAAGACAACAGCAGTAGCAGCAACAAGAAGGGGAGGAAGAACGAGAATGAGAGTGGTTTTGAAGATGATCAGGAGTCCGATCGAAGCAGCCA
AAACGAGATCACTTCGAGGATGATTGAAGAGATTTTCGGGATAGAAGAGGAGGTTGCTCGACCAAGAAAGAAAAGATACAGGTCTCTTGTGTCTATTTAC
CAGGCGATGGATATGCCACTCAGGAATAATGTTAGGTATGGGAAGAAGGTGAGCACTGAAGAAAACCCCAAGAGAGTTTCAGCCAGCGCAGAAGAGGGTA
ATCAAAGTAGTAAAACATAG
AA sequence
>Potri.007G076600.2 pacid=42765446 polypeptide=Potri.007G076600.2.p locus=Potri.007G076600 ID=Potri.007G076600.2.v4.1 annot-version=v4.1
MAAMAMAELKALCAIHPKTFTDSDVAAAQQLVQLSGEDNSSSSNKKGRKNENESGFEDDQESDRSSQNEITSRMIEEIFGIEEEVARPRKKRYRSLVSIY
QAMDMPLRNNVRYGKKVSTEENPKRVSASAEEGNQSSKT

DESeq2's median of ratios [POPLAR]

Mapped by: Order by: Show schematic diagram

Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol NWA:WTNWB:WTNWA:OE-ARK2NWB:OE-ARK2NWA:miRNA-ARK2NWB:miRNA-ARK2NW 0hrWT H20WT-NWTUA1dEY NWTUA1dEY+TUB15 NWTUA1dY+TUB9 NWPde NWNWA:WT GANWBWT GATW:WTTW:WT GANWA:OE-ARK2 GANWB:OE-ARK2 GATW:OE-ARK2TW:OE-ARK2 GANWA:miRNA-ARK2 GANWB:miRNA-ARK2 GATW:miRNA-ARK2TW:miRNA-ARK2 GATW 2hrTW 8hrTW 24hrTW 48hrTW 96hrTW 336hrWT ACC35S::etr1-1 H2035S::etr1-1 ACCLMX5::etr1-1 H20LMX5::etr1-1 ACCWT-TWTUA1dEY TWTUA1dEY+TUB15 TWTUA1dY+TUB9 TWPde TWOW:WTOW:WT GAOW:OE-ARK2OW:OE-ARK2 GAOW:miRNA-ARK2OW:miRNA-ARK2 GAOW 2hrOW 8hrOW 24hrOW 48hrOW 96hrOW 336hrRoot CTRRoot LongColdRoot LongDrougtRoot LongHeatRoot LongSaltRoot ShortColdRoot ShortDrougtRoot ShortHeatRoot ShortSaltPtr rootLeaf CTRLeaf LongColdLeaf LongDrougtLeaf LongHeatLeaf LongSaltLeaf ShortColdLeaf ShortDrougtLeaf ShortHeatLeaf ShortSaltPtr leafStem CTRStem LongColdStem LongDrougtStem LongHeatStem LongSaltStem ShortColdStem ShortDrougtStem ShortHeatStem ShortSaltPtr shootPtr xylemPtr phloemPtr fiberPtr vesselPtr fiber vessel ray
Potri.007G076600
[exp]
0 1
AT5G17680 disease resistance protein (TI... Potri.019G113701
[exp]
1.00 0.9620
AT3G05660 AtRLP33 receptor like protein 33 (.1) Potri.012G027400
[exp]
1.41 0.9592
AT4G39700 Heavy metal transport/detoxifi... Potri.005G079800
[exp]
4.58 0.9257
AT4G00231 MEE50 maternal effect embryo arrest ... Potri.008G158901
[exp]
4.69 0.9354
AT3G23440 EDA6, MEE37 MATERNAL EFFECT EMBRYO ARREST ... Potri.010G068800
[exp]
6.32 0.9378
Potri.002G021100
[exp]
7.74 0.9502
AT3G10080 RmlC-like cupins superfamily p... Potri.010G238100
[exp]
7.74 0.9437
AT4G17490 AP2_ERF ERF-6-6, ATERF6 ethylene responsive element bi... Potri.003G080600
[exp]
9.48 0.9308
AT4G39830 Cupredoxin superfamily protein... Potri.007G088222
[exp]
10.90 0.9404
AT3G07600 Heavy metal transport/detoxifi... Potri.009G048300
[exp]
13.26 0.9317

Potri.007G076600 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.