Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G21790 1448 / 0 ATRNR1, RNR1, CLS8, RIBONUCLEOTIDEREDUCTASE,REDUCTASEPROTEINR1, R1, RIBONUCLEOTIDEREDUCTASE, REDUCT CRINKLY LEAVES 8, RIBONUCLEOTIDE REDUCTASE LARGE SUBUNIT 1, ribonucleotide reductase 1 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.005G087300 [exp] 1540 / 0 AT2G21790 1450 / 0.0 CRINKLY LEAVES 8, RIBONUCLEOTIDE REDUCTASE LARGE SUBUNIT 1, ribonucleotide reductase 1 (.1) Potri.005G194900 [exp] 1397 / 0 AT2G21790 1421 / 0.0 CRINKLY LEAVES 8, RIBONUCLEOTIDE REDUCTASE LARGE SUBUNIT 1, ribonucleotide reductase 1 (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10033526 [exp] 1503 / 0 AT2G21790 1514 / 0.0 CRINKLY LEAVES 8, RIBONUCLEOTIDE REDUCTASE LARGE SUBUNIT 1, ribonucleotide reductase 1 (.1) Lus10020845 [exp] 1493 / 0 AT2G21790 1503 / 0.0 CRINKLY LEAVES 8, RIBONUCLEOTIDE REDUCTASE LARGE SUBUNIT 1, ribonucleotide reductase 1 (.1) Lus10018867 [exp] 1319 / 0 AT2G21790 1358 / 0.0 CRINKLY LEAVES 8, RIBONUCLEOTIDE REDUCTASE LARGE SUBUNIT 1, ribonucleotide reductase 1 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF00317 [poplar] [flax] Ribonuc_red_lgN Ribonucleotide reductase, all-alpha domain CL0339 [poplar] [flax] PFL-like PF02867 [poplar] [flax] Ribonuc_red_lgC Ribonucleotide reductase, barrel domain CL0339 [poplar] [flax] PF03477 [poplar] [flax] ATP-cone ATP cone domain
Representative CDS sequence Show only first row Show all	>Potri.007G076700.2 pacid=42765283 polypeptide=Potri.007G076700.2.p locus=Potri.007G076700 ID=Potri.007G076700.2.v4.1 annot-version=v4.1 ATGTATGTGGTCAAGAGAGACGGGAAGCAAGAGGCTGTCCACTTTGATAAGATCACTGCTAGATTGAAGAAACTTAGCTATGGCCTTAGCACTGACCACT GTGACCCTGTCCTTGTGTCTCAGAAGGTGTGTGCTGGTGTCTACAAAGGTGTCACCACTAGCCAGCTTGATGAATTGGCTGCCGAGACTGCTGCTGCTAT GACTGCTAATCATCCTGATTACGCCTCTTTGGCTGCGAGGATTGTTGTTTCAAATCTGCATAAGAACACTCATAAATCATTTTCTGAGACGATCAAAATT ATGTACAACCATTTTAATGAGAAATCTGGACTGAAGGCTCCTTTGATTGCTGATGATGTTTATGAAATAATTATGAAGAATGCTGCTCGCCTGGACTCTG AGATCATCTATGATCGGGACTTTGACTATGATTACTTTGGCTTCAAGACCCTTGAAAGATCCTACCTGCTGAAGGTCCAAGGGAAGGTTGTGGAAAGGCC CCAGCACATGCTAATGAGGGTTGCTGTTGGAATTCACAAAGATGATATTGATTCGGCACTCAAAACATACCATTTGATGTCTCAGCGATGGTTCACACAT GCTTCTCCCACCCTTTTCAATGCTGGAACACCTAGACCCCAATTGAGCAGCTGCTTCTTGGTGTGCATGAAAGATGATAGTATTGAAGGAATATATGATA CATTGAAGGAGTGTGCTGTTATCAGTAAATCAGCTGGAGGAATTGGTGTATCTGTTCACAACATCCGTGCCACTGGAAGTTATATTCGTGGAACAAATGG GACATCTAATGGCATTGTTCCAATGTTGCGGGTGTTCAATGATACTGCCCGCTATGTTGATCAAGGTGGAGGCAAGAGGAAAGGTGCTTTTGCTGTGTAT TTGGAGCCATGGCATGCAGATGTATTTGAGTTTCTTGATCTTAGGAAAAATCACGGAAAGGAAGAACACCGTGCTCGGGATTTATTCTATGCTCTGTGGG TTCCTGATCTCTTTATGGAGAGAGTTCAAAGCAATGGGCAATGGTCATTATTTTGCCCTAGTGAGGCTCCGGGCTTGGCAGATTGTTGGGGCAAAGAATT TGAGGAACTATACACCCGCTATGAAAGAGATGGCAAGGCCAAGAAGGTTGTCCAGGCACAAAACCTCTGGTTTGAGATTTTGAAATCTCAGATAGAGACT GGGACCCCTTACATGCTTTTTAAGGATACTTGCAACAGAAAAAGCAACCAACAGAACCTGGGTACCATAAAATCTTCAAACTTGTGCACTGAGATAATTG AATACACAAGTCCAACAGAAACTGCTGTGTGCAATCTGGCTTCGATTGCTCTACCACGATTTGTTAGAGAGATGGGAGTCCCTATAGAGTCTCATCCATC TAAAGTTGTTGGCAGTAGAGGTTCCAACAGAAGATATTTTGATTTTGAGAAACTAGCAGAGGTTACAGGAGTGGTTACAGTCAATCTTAACAAAATAATT GATGTTAATTACTACCCTGTTGAAACTGCTAGAAGGTCAAATTTCCGACATAGACCCATTGGCATTGGAGTTCAAGGTCTCGCAGATGCCTTCATGTTGC TTGGAATGGCATTTGACTCACCCGAGGCACAAAAGCTGAATAAGGACATATTTGAAACCATTTATTATCATGCTCTGAAAGCTTCTTCTGAGATTGCTGC AAGAGAAGGTCCCTATGAAACATACGTTGGAAGTCCTGTGAGCAAGGGGATTCTGCAGCCTGACATGTGGGGTGTAACTCCTTCCAGTCTGTGGAACTGG GATGCCCTAAGAGAAATGATATCTAAGAATGGGGTGAGAAATTCACTTCTTTTGGCACCAATGCCAACTGCTTCAACCAGCCAGATTCTTGGAAACAATG AGTGCTTTGAGCCATATACTTCAAACATCTATAGTCGTAGAGTTTTAAGTGGTGAATTTGTTGTGGTCAACAAACATCTTCTTCATGACTTAACTGAGAT GGGCCTTTGGTCTCCTGCTCTGAAGAACAAAATAATCTATGAAGATGGCTCTGTCCAGAAAATCCCAGAAATCTCAGATGATCTCAAGTGTATATACAAG ACTGTTTGGGAGATCAAGCAAAAGACATTAGTTGATATGGCAGTTGATCGTGGATGCTTCATAGATCAGAGTCAAAGTCTTAATATACATATGGACCAAC CCAATTTTGGAAAACTAACTTCTCTACACTTCTATGCATGGTCAAAGGGTCTAAAGACAGGGATGTATTATCTAAGATCACAAGCGGCAGCTGATGCCAT CAAGTTCACTGTTGATACTTCTGTTTTTAAAGAAAAAAAGCCAGAATTGGATGATGATGCTGCTGCTGACGATACTAAAATAGCTCAAATGGTTTGCTCC CTTACCAACCGTGAGGAGTGCATGGCTTGTGGAAGTTGA
AA sequence Show only first row Show all	>Potri.007G076700.2 pacid=42765283 polypeptide=Potri.007G076700.2.p locus=Potri.007G076700 ID=Potri.007G076700.2.v4.1 annot-version=v4.1 MYVVKRDGKQEAVHFDKITARLKKLSYGLSTDHCDPVLVSQKVCAGVYKGVTTSQLDELAAETAAAMTANHPDYASLAARIVVSNLHKNTHKSFSETIKI MYNHFNEKSGLKAPLIADDVYEIIMKNAARLDSEIIYDRDFDYDYFGFKTLERSYLLKVQGKVVERPQHMLMRVAVGIHKDDIDSALKTYHLMSQRWFTH ASPTLFNAGTPRPQLSSCFLVCMKDDSIEGIYDTLKECAVISKSAGGIGVSVHNIRATGSYIRGTNGTSNGIVPMLRVFNDTARYVDQGGGKRKGAFAVY LEPWHADVFEFLDLRKNHGKEEHRARDLFYALWVPDLFMERVQSNGQWSLFCPSEAPGLADCWGKEFEELYTRYERDGKAKKVVQAQNLWFEILKSQIET GTPYMLFKDTCNRKSNQQNLGTIKSSNLCTEIIEYTSPTETAVCNLASIALPRFVREMGVPIESHPSKVVGSRGSNRRYFDFEKLAEVTGVVTVNLNKII DVNYYPVETARRSNFRHRPIGIGVQGLADAFMLLGMAFDSPEAQKLNKDIFETIYYHALKASSEIAAREGPYETYVGSPVSKGILQPDMWGVTPSSLWNW DALREMISKNGVRNSLLLAPMPTASTSQILGNNECFEPYTSNIYSRRVLSGEFVVVNKHLLHDLTEMGLWSPALKNKIIYEDGSVQKIPEISDDLKCIYK TVWEIKQKTLVDMAVDRGCFIDQSQSLNIHMDQPNFGKLTSLHFYAWSKGLKTGMYYLRSQAAADAIKFTVDTSVFKEKKPELDDDAAADDTKIAQMVCS LTNREECMACGS

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT2G21790		ATRNR1, RNR1, C...	CRINKLY LEAVES 8, RIBONUCLEOTI...		Potri.007G076700 [exp]	0	1
AT5G66750		CHR01, CHA1, SO...	SOMNIFEROUS 1, DECREASED DNA M...		Potri.019G129900 [exp]	4.47	0.9161	Pt-SOM1.1,CHR905
AT2G16780		MSI02, NFC2, NF...	NUCLEOSOME/CHROMATIN ASSEMBLY ...		Potri.009G135100 [exp]	4.89	0.8732	NFC903,Pt-MSI2.1
AT5G62410		TTN3, ATSMC4, A...	TITAN 3, structural maintenanc...		Potri.003G108400 [exp]	7.00	0.9005	CPE902,Pt-SMC2.2
AT5G62410		TTN3, ATSMC4, A...	TITAN 3, structural maintenanc...		Potri.001G125000 [exp]	7.34	0.9137
AT5G46280		MCM3	MINICHROMOSOME MAINTENANCE 3, ...		Potri.004G131600 [exp]	10.67	0.9102
AT5G46740		UBP21	ubiquitin-specific protease 21...		Potri.001G142000 [exp]	12.24	0.9044	Pt-UBP21.2
AT5G49160		MET2, DMT1, DMT...	METHYLTRANSFERASE I, METHYLTRA...		Potri.004G134000 [exp]	12.84	0.8902	DMT901,Pt-MET1.2
AT3G63130		ATRANGAP1, RANG...	RAN GTPASE-ACTIVATING PROTEIN ...		Potri.005G209600 [exp]	13.41	0.9076	Pt-RANGAP1.1
AT1G69770		CMT3	chromomethylase 3 (.1)		Potri.001G009600 [exp]	13.78	0.8964
AT5G52910		ATIM	timeless family protein (.1)		Potri.015G024300 [exp]	15.49	0.8999

Compare expression of checked genes

Potri.007G076700 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.