Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G24630 445 / 2e-156 DHHC-type zinc finger family protein (.1) AT5G50020 430 / 4e-150 DHHC-type zinc finger family protein (.1.2) AT3G26935 362 / 4e-123 DHHC-type zinc finger family protein (.1) AT5G41060 337 / 4e-114 DHHC-type zinc finger family protein (.1.2) AT3G48760 315 / 2e-104 DHHC-type zinc finger family protein (.1) AT3G56930 314 / 5e-104 DHHC-type zinc finger family protein (.1.2) AT5G05070 291 / 4e-96 DHHC-type zinc finger family protein (.1) AT3G56920 270 / 1e-88 DHHC-type zinc finger family protein (.1) AT2G40990 271 / 3e-88 DHHC-type zinc finger family protein (.1) AT2G14255 97 / 4e-22 Ankyrin repeat family protein with DHHC zinc finger domain (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G065500 [exp] 506 / 2e-180 AT4G24630 543 / 0.0 DHHC-type zinc finger family protein (.1) Potri.005G195300 [exp] 493 / 2e-175 AT4G24630 555 / 0.0 DHHC-type zinc finger family protein (.1) Potri.001G325400 [exp] 367 / 3e-125 AT3G26935 688 / 0.0 DHHC-type zinc finger family protein (.1) Potri.017G063800 [exp] 360 / 9e-123 AT3G26935 671 / 0.0 DHHC-type zinc finger family protein (.1) Potri.003G160600 [exp] 343 / 3e-116 AT3G26935 435 / 1e-150 DHHC-type zinc finger family protein (.1) Potri.015G101900 [exp] 338 / 6e-114 AT3G26935 466 / 2e-162 DHHC-type zinc finger family protein (.1) Potri.012G103300 [exp] 337 / 2e-113 AT3G26935 507 / 1e-178 DHHC-type zinc finger family protein (.1) Potri.001G070100 [exp] 336 / 4e-113 AT3G26935 435 / 1e-150 DHHC-type zinc finger family protein (.1) Potri.016G025100 [exp] 322 / 8e-107 AT3G56930 497 / 3e-173 DHHC-type zinc finger family protein (.1.2)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10033527 [exp] 457 / 3e-162 AT4G24630 415 / 1e-144 DHHC-type zinc finger family protein (.1) Lus10028737 [exp] 452 / 5e-159 AT4G24630 582 / 0.0 DHHC-type zinc finger family protein (.1) Lus10020844 [exp] 451 / 5e-159 AT5G50020 405 / 3e-140 DHHC-type zinc finger family protein (.1.2) Lus10028687 [exp] 441 / 7e-154 AT4G24630 563 / 0.0 DHHC-type zinc finger family protein (.1) Lus10032009 [exp] 365 / 1e-124 AT3G26935 694 / 0.0 DHHC-type zinc finger family protein (.1) Lus10035177 [exp] 363 / 6e-124 AT3G26935 694 / 0.0 DHHC-type zinc finger family protein (.1) Lus10022451 [exp] 319 / 4e-106 AT3G26935 486 / 3e-170 DHHC-type zinc finger family protein (.1) Lus10016754 [exp] 318 / 2e-105 AT3G26935 473 / 6e-165 DHHC-type zinc finger family protein (.1) Lus10012096 [exp] 306 / 2e-101 AT3G56930 478 / 7e-167 DHHC-type zinc finger family protein (.1.2) Lus10027274 [exp] 290 / 8e-96 AT5G05070 468 / 2e-164 DHHC-type zinc finger family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF01529 [poplar] [flax] DHHC DHHC palmitoyltransferase
Representative CDS sequence Show only first row Show all	>Potri.007G077000.1 pacid=42766420 polypeptide=Potri.007G077000.1.p locus=Potri.007G077000 ID=Potri.007G077000.1.v4.1 annot-version=v4.1 ATGGCTAGGCGTGTATACCATGTTTGGAAGGGACGCAATATTTTCTTCTGCAAAGGGAGGCTTATATTTGGTCCAGATGCCAAATCATTGATTATTACCT TATTGCTCATCCTGGTTCCCGTTGTTATATTCTGTACAAATGTCGCAAGGAACCTCCTCCATGAATTTCCAACATCTAATACTGGCTATGTCATTCTAGT CGTAACAATTCTGTTCACAATATACGTATTGGTGCTCCTGTTTCTCACTTCAGCCCGTGACCCAGGCATTGTTCCTCGAAATTCACATCCACCAGAGGAA GAGATTTGCTACGACCCTTCAACCTCGGTAGATGTTGGCGGGAGACACACACCTACTCCACGGTTACCGCGCACAAAAGAAGTTACTGTCAATGGTTTTT CTGTGAAAGTGAAGTATTGCGATACATGCATGATATATCGACCACCCCGTTGCTCACATTGCTCTGTATGTGATAACTGCGTGGAGCGATTCGATCACCA TTGTCCCTGGGTGGGCCAATGCATTGGACTGCGCAACTACCGGTACTTCTTTCTGTTTGTTTCTTCATCAGCTCTTCTCTGCATCTTCATATTTTCAATG TCAGCTTTGAACGTAAAGTTTCTTATGGATGATTATGGTTCTCCCTGGAAGGCAATGAAGGAGTCACCTGCATCTGTGATATTAATAGTTTATTCCTTCA TTTTCCTCTGGTTTGTCGGTGGCCTCACCTGCTTCCATCTGTATCTTATAGGCAGAAACCAGACTACATATGAAAACTTTCGCTATGGAGCAGCCAACAG GCACAATGTCTATGACCAGGGTTGCTTCAGGAATTTTCTTGAAGTATTCTGCACCAAGACAAATCCTTCAAGAAACAATTTCCAGGCTTATGTACAAGAA GAGATGCCCATGCGTATAAACCGAGAAGTAAAAATAGATGATTCAGAAGGAGACAGTCGGACAAAAGTACAAGACAATCTAGAAATCGATAATGACCTTT TAAAGATATCCCAGCGTCGCGATGCTGTAGAGGCTGTTAACAGTTGA
AA sequence Show only first row Show all	>Potri.007G077000.1 pacid=42766420 polypeptide=Potri.007G077000.1.p locus=Potri.007G077000 ID=Potri.007G077000.1.v4.1 annot-version=v4.1 MARRVYHVWKGRNIFFCKGRLIFGPDAKSLIITLLLILVPVVIFCTNVARNLLHEFPTSNTGYVILVVTILFTIYVLVLLFLTSARDPGIVPRNSHPPEE EICYDPSTSVDVGGRHTPTPRLPRTKEVTVNGFSVKVKYCDTCMIYRPPRCSHCSVCDNCVERFDHHCPWVGQCIGLRNYRYFFLFVSSSALLCIFIFSM SALNVKFLMDDYGSPWKAMKESPASVILIVYSFIFLWFVGGLTCFHLYLIGRNQTTYENFRYGAANRHNVYDQGCFRNFLEVFCTKTNPSRNNFQAYVQE EMPMRINREVKIDDSEGDSRTKVQDNLEIDNDLLKISQRRDAVEAVNS

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT4G24630			DHHC-type zinc finger family p...		Potri.007G077000 [exp]	0	1
AT2G41990			unknown protein		Potri.009G140600 [exp]	4.89	0.8503
AT3G62110			Pectin lyase-like superfamily ...		Potri.002G186900 [exp]	5.19	0.8591
AT3G58690			Protein kinase superfamily pro...		Potri.014G143100 [exp]	6.32	0.8561
AT3G50780			unknown protein		Potri.005G129700 [exp]	7.07	0.8603
AT2G34190			Xanthine/uracil permease famil...		Potri.004G058800 [exp]	7.74	0.8512
AT1G53380			Plant protein of unknown funct...		Potri.001G387700 [exp]	7.74	0.8556
AT1G74720		QKY	QUIRKY, C2 calcium/lipid-bindi...		Potri.016G113800 [exp]	9.74	0.7823
AT3G01680		SEOR1, SEOb	Sieve-Element-Occlusion-Relate...		Potri.012G090400 [exp]	11.09	0.8644
					Potri.018G101800 [exp]	12.68	0.8261
AT4G13600			Carbohydrate-binding X8 domain...		Potri.017G055700 [exp]	12.96	0.8384

Compare expression of checked genes

Potri.007G077000 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.