Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol	Pt-UBP27.1
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G39370 373 / 3e-124 UBP27 ubiquitin-specific protease 27 (.1.2.3) AT1G04860 58 / 1e-08 ATUBP2, UBP2 ubiquitin-specific protease 2 (.1) AT2G32780 58 / 1e-08 ATUBP1 ubiquitin-specific protease 1 (.1) AT1G32850 52 / 8e-07 UBP11 ubiquitin-specific protease 11 (.1) AT4G31670 52 / 8e-07 UBP18 ubiquitin-specific protease 18 (.1) AT2G40930 49 / 6e-06 PDE323, ATUBP5, UBP5 PIGMENT DEFECTIVE EMBRYO 323, ubiquitin-specific protease 5 (.1) AT5G22030 47 / 2e-05 UBP8 ubiquitin-specific protease 8 (.1.2) AT5G46740 47 / 5e-05 UBP21 ubiquitin-specific protease 21 (.1) AT5G57990 46 / 8e-05 UBP23 ubiquitin-specific protease 23 (.1) AT4G30890 45 / 8e-05 UBP24 ubiquitin-specific protease 24 (.1.2.3)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.018G009500 [exp] 60 / 3e-09 AT2G24640 686 / 0.0 ubiquitin-specific protease 19 (.1.2) Potri.006G270600 [exp] 58 / 1e-08 AT2G24640 698 / 0.0 ubiquitin-specific protease 19 (.1.2) Potri.017G055600 [exp] 56 / 4e-08 AT1G04860 524 / 1e-170 ubiquitin-specific protease 2 (.1) Potri.001G378900 [exp] 54 / 2e-07 AT1G17110 848 / 0.0 ubiquitin-specific protease 15 (.1.2) Potri.001G315600 [exp] 54 / 3e-07 AT1G04860 479 / 2e-153 ubiquitin-specific protease 2 (.1) Potri.016G031900 [exp] 50 / 4e-06 AT2G40930 1204 / 0.0 PIGMENT DEFECTIVE EMBRYO 323, ubiquitin-specific protease 5 (.1) Potri.006G033800 [exp] 49 / 1e-05 AT2G40930 1231 / 0.0 PIGMENT DEFECTIVE EMBRYO 323, ubiquitin-specific protease 5 (.1) Potri.006G266100 [exp] 48 / 1e-05 AT5G10790 628 / 0.0 ubiquitin-specific protease 22 (.1) Potri.001G214800 [exp] 46 / 8e-05 AT5G22030 1086 / 0.0 ubiquitin-specific protease 8 (.1.2)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10033528 [exp] 572 / 0 AT4G39370 421 / 8e-143 ubiquitin-specific protease 27 (.1.2.3) Lus10020843 [exp] 552 / 0 AT4G39370 407 / 2e-137 ubiquitin-specific protease 27 (.1.2.3) Lus10026918 [exp] 63 / 3e-10 AT2G24640 686 / 0.0 ubiquitin-specific protease 19 (.1.2) Lus10020116 [exp] 63 / 3e-10 AT2G24640 686 / 0.0 ubiquitin-specific protease 19 (.1.2) Lus10016664 [exp] 51 / 3e-06 AT1G04860 669 / 0.0 ubiquitin-specific protease 2 (.1) Lus10007120 [exp] 48 / 1e-05 AT1G04860 521 / 1e-172 ubiquitin-specific protease 2 (.1) Lus10013599 [exp] 48 / 2e-05 AT5G22030 811 / 0.0 ubiquitin-specific protease 8 (.1.2) Lus10008276 [exp] 48 / 2e-05 AT4G10570 702 / 0.0 ubiquitin-specific protease 9 (.1) Lus10024043 [exp] 48 / 2e-05 AT4G39910 682 / 0.0 ubiquitin-specific protease 3 (.1) Lus10041705 [exp] 48 / 2e-05 AT4G39910 682 / 0.0 ubiquitin-specific protease 3 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0125 [poplar] [flax] Peptidase_CA PF00443 [poplar] [flax] UCH Ubiquitin carboxyl-terminal hydrolase
Representative CDS sequence Show only first row Show all	>Potri.007G077100.1 pacid=42766286 polypeptide=Potri.007G077100.1.p locus=Potri.007G077100 ID=Potri.007G077100.1.v4.1 annot-version=v4.1 ATGAAGACGAATTGGGTTTCAGCATCTGGGCTTGCAGCTGTTTTGGGGGTTGCTGGTTTGGTGTTGGCTCTAATAAAAGATCCCAAATCTTGGAATCTAA AACTAAGTGCCTTGCCTTCTTGGCTGGAATTAAACCAGAGAGAGAATAATAATCGTCCAAAGAAGCTTTTCTTGCTTCCTGGCTTGCAAAATCTTGGCAA TAATTGCTTTTTGAATGTTATCTTACAGGCTTTAGGTAGCTGTTCAAATTTCCAATCTTTTCTTCAAAAGGTTATAGAAGAATGGGAATCATTTGCCGGT GAGGAATGGAATGAGAGCTTGCAGCTTACGGTGGCTTTGGCTGCTTTATTAGAAGAACTGTCTGTGATTAGCAGAGAGAGCATTGTATTGAGTCCAAGAA AGGTGATGCTTGCAATGGCTCATTATATTCAAAATTTTAATCTGACGAGCCAACAGGATGCTGAAGAAGCATTCCTTCATCTACTGTCCTCTTTAAGGGA CGAATTTTCTGATTCTTATCTTCCAAAACATCATTCTCTGGCAGATGCATTTGCATCCCCTAACTGTAGAATTCTGACTCCAAATAGGATTGAGATCCAG AGTGAGCAAGAAAGGTGGCAGCAGCACTTCCTCGGACCATTTGATGGAATTCTTAGTAGCATTTTAACGTGTCAAAGTTGTTCGACTGAGATTTCATTGA ATTTTCAATTTTTTCATAGCTTGCCTCTTTTGCCTGTGCTTGAAGGTGGTGCCACCATTAGGGTTGGGTGTAGATTGGAGGATTGCCTCAGGCAGTTCAC TGTTTCTGAGCAAGTTGAGAATTACAGCTGCAGCCACTGTTGGCACATTGCTGCAATAAAGTATTTATCTTTAAGGGGAGCAACAGAGACGGAGATAAAA AGACTTAAGAGTTGTAATGAGCAAGACTCGTGTACCTGCCATCTCCTTGTTCATCTAGAAAATCTACCATGGTCAAATAATTTTTCTCGCACTTTAAAGC AACTAAGCATTGCTCGTAGTCCCAAGATTCTTTGCATTCAATTACAACGTGCTTCTATAAATTTTTTCGGAGAAGTAGTCAAACTTCAGGGCCACATTAG CTTTCCATTAACTTTGAACCTGCTTCCATTCATGATGAAAGAGATGCAATGTCAAAAACCAAGCTCTCATCTAAACCATTTTGATGTGCAATATGACACC AGAATGCTGAACAGCATTTATGAAAGAAATGCTTCAAAATTATTATCTGCAAATGCATTTAGATCCCCCGCACATGCAGAAGCTTTCCTGGGACAATCCA AAATACCACAAACCACGGACATCTTTAGTTCGCAAGCTAATGAAAAGGTCAGTGCAGCTTGTGAATTAGTCCCTTCAATACCTCAGGTATATCGTCTTGT TTCTGTCGTGGAGCATTTTGGAAGAGCTTGTGGTGGGCATTATACTGTTTACAGAAGTTTGCAATCAGAATCGCATGAGGAACATCCTGATGAAAATTGC AAACCTTCCCTCATGCACTGGTTTTGTATTTCAGACTCCAATGTGTATAGGGTTTCAGAGGAGGATGTTCTAGCTGCAGAAGCTAGCTTGCTCTTTTATG AGAGAATTGTAGAAAGCTGA
AA sequence Show only first row Show all	>Potri.007G077100.1 pacid=42766286 polypeptide=Potri.007G077100.1.p locus=Potri.007G077100 ID=Potri.007G077100.1.v4.1 annot-version=v4.1 MKTNWVSASGLAAVLGVAGLVLALIKDPKSWNLKLSALPSWLELNQRENNNRPKKLFLLPGLQNLGNNCFLNVILQALGSCSNFQSFLQKVIEEWESFAG EEWNESLQLTVALAALLEELSVISRESIVLSPRKVMLAMAHYIQNFNLTSQQDAEEAFLHLLSSLRDEFSDSYLPKHHSLADAFASPNCRILTPNRIEIQ SEQERWQQHFLGPFDGILSSILTCQSCSTEISLNFQFFHSLPLLPVLEGGATIRVGCRLEDCLRQFTVSEQVENYSCSHCWHIAAIKYLSLRGATETEIK RLKSCNEQDSCTCHLLVHLENLPWSNNFSRTLKQLSIARSPKILCIQLQRASINFFGEVVKLQGHISFPLTLNLLPFMMKEMQCQKPSSHLNHFDVQYDT RMLNSIYERNASKLLSANAFRSPAHAEAFLGQSKIPQTTDIFSSQANEKVSAACELVPSIPQVYRLVSVVEHFGRACGGHYTVYRSLQSESHEEHPDENC KPSLMHWFCISDSNVYRVSEEDVLAAEASLLFYERIVES

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT4G39370		UBP27	ubiquitin-specific protease 27...		Potri.007G077100 [exp]	0	1	Pt-UBP27.1
AT1G12930			ARM repeat superfamily protein...		Potri.014G141100 [exp]	2.00	0.8252
AT2G22720			SPT2 chromatin protein (.1.2.3...		Potri.005G148700 [exp]	6.32	0.7945
AT4G19600		CYCT1;4	Cyclin family protein (.1)		Potri.008G150500 [exp]	6.32	0.7992
AT3G06670			binding (.1.2)		Potri.008G107300 [exp]	6.32	0.8167
AT5G04460			RING/U-box superfamily protein...		Potri.008G030100 [exp]	7.48	0.7851
AT1G62930		RPF3	RNA processing factor 3, Tetra...		Potri.013G150100 [exp]	10.48	0.7584
AT1G71080			RNA polymerase II transcriptio...		Potri.008G127900 [exp]	10.58	0.7202
AT2G30580		BMI1A, DRIP2	DREB2A-interacting protein 2 (...		Potri.013G042000 [exp]	10.72	0.7282
AT1G70650			Ran BP2/NZF zinc finger-like s...		Potri.010G107400 [exp]	12.96	0.7855
AT5G03730		AtCTR1, SIS1, C...	SUGAR-INSENSITIVE 1, CONSTITUT...		Potri.008G025800 [exp]	13.85	0.7274

Compare expression of checked genes

Potri.007G077100 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.