Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G16515 39 / 2e-05 RGF6 root meristem growth factor 6, unknown protein AT5G64770 35 / 0.0008 RGF9 root meristem growth factor 9, unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.005G087000 [exp] 110 / 8e-34 AT5G64770 38 / 6e-05 root meristem growth factor 9, unknown protein Potri.006G060000 [exp] 36 / 0.0006 ND /
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10005747 [exp] 41 / 1e-05 ND / Lus10027448 [exp] 41 / 1e-05 ND / Lus10006797 [exp] 37 / 0.0007 AT5G09900 744 / 0.0 REGULATORY PARTICLE NON-ATPASE SUBUNIT 5A, MARIPOSA, EMBRYO DEFECTIVE 2107, 26S proteasome regulatory subunit, putative (RPN5) (.1), 26S proteasome regulatory subunit, putative (RPN5) (.2), 26S proteasome regulatory subunit, putative (RPN5) (.3)
PFAM info
Representative CDS sequence Show only first row Show all	>Potri.007G077300.1 pacid=42766517 polypeptide=Potri.007G077300.1.p locus=Potri.007G077300 ID=Potri.007G077300.1.v4.1 annot-version=v4.1 ATGGCAAAGATTTCACGCAATCATCTTGTTCTTGTAGCCTTTTTCCTTCTTTGCTTTGTTTCCACTTGTGCTAGAGCAGCAAGGACTTTGCGAGAGGCTA GCAACCACGGAGCAGAGAAAAAGGACCAAAATGATATGTTTCCATCAAAAGAAAATGGTTTACCAGACGTGGAGGAATTGGTTGGGATGGACTACACTCC AGCGAGAAAGAAGCCTCCAATCCACAACTAA
AA sequence Show only first row Show all	>Potri.007G077300.1 pacid=42766517 polypeptide=Potri.007G077300.1.p locus=Potri.007G077300 ID=Potri.007G077300.1.v4.1 annot-version=v4.1 MAKISRNHLVLVAFFLLCFVSTCARAARTLREASNHGAEKKDQNDMFPSKENGLPDVEELVGMDYTPARKKPPIHN

---

DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT4G16515		RGF6	root meristem growth factor 6,...		Potri.007G077300 [exp]	0	1
AT5G49630		AAP6	amino acid permease 6 (.1)		Potri.002G112100 [exp]	1.41	0.8033	Pt-AAP1.2
AT2G41560		ACA4	"autoinhibited Ca\(2+\)-ATPase...		Potri.016G043100 [exp]	2.82	0.8366
AT4G34760			SAUR-like auxin-responsive pro...		Potri.007G012800 [exp]	4.47	0.7369	SAUR28
ATCG01060		ATCG01060.1, PS...	iron-sulfur cluster binding;el...		Potri.019G014344 [exp]	11.35	0.7756
AT5G42680			Protein of unknown function, D...		Potri.002G128800 [exp]	19.23	0.6728
					Potri.016G007450 [exp]	19.77	0.7181
AT3G04890			Uncharacterized conserved prot...		Potri.013G037050 [exp]	25.09	0.7399
AT1G80600		WIN1	HOPW1-1-interacting 1 (.1)		Potri.017G053500 [exp]	26.72	0.6959
ATCG00690		PSBTC, ATCG0069...	photosystem II reaction center...		Potri.019G028351 [exp]	28.98	0.7265
AT3G51290			Protein of unknown function (D...		Potri.009G137500 [exp]	34.40	0.7632

Compare expression of checked genes

Potri.007G077300 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.