Plant FIBer expression Database

Potri.007G077400 [POPLAR]


External link
JGI Phytozome v13PopgenieAspWood                  
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT2G22140 443 / 2e-150 ATEME1B essential meiotic endonuclease 1B (.1)
AT2G21800 367 / 7e-121 ATEME1A essential meiotic endonuclease 1A (.1.2)
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Flax homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10006798
[exp]
452 / 1e-153 AT2G22140 436 / 7e-148 essential meiotic endonuclease 1B (.1)
Lus10005803
[exp]
194 / 2e-59 AT2G22140 183 / 3e-56 essential meiotic endonuclease 1B (.1)
PFAM info
Clan ID Clan name Pfam ID Pfam name Pfam description
CL0236 PDDEXK PF02732 ERCC4 ERCC4 domain
Representative CDS sequence
>Potri.007G077400.8 pacid=42766637 polypeptide=Potri.007G077400.8.p locus=Potri.007G077400 ID=Potri.007G077400.8.v4.1 annot-version=v4.1
ATGTGGAATCCGATAATCCTCTCCGATGAAGAAGAAGAAAACCAAAAAACGCCGCTCCCATCTCTCCCTAAAAAACCCCGAACCCTACCCGATCCGACCA
TTCTAGTCCTCGACGTCGATGACCCGACCCCACACAAATCTCCCTCTTTCGTTCCCGAAACTCCATTGTCCGATGTCTCCATCGTCAAATGCACTTTCCC
CCAAATTAGGGTTCCCGATTTTGATCCTGAAACCCTCTCTGGGTTTTGTTCTTGTGTGAAAGGAAATGCTGGATTGATCTGTTTGGAATCCGAAAATGAT
GAGCCGGAAAGTGCGAAAAACTGGAAGGACAAGACGACTATGGATGCGGGTTATGATGAAGTCGAGGAGAGAAGAAGATGGAGTACTTCTACCAACTTTG
ACTCAGTCGATTGGCTTGTGGATGCTAATGTAAATCAAATGTCCGGGGTCAGTTCTTCGCAACCGAGTCTCTCACAAGATGATATCTATCAGATAGATGA
TTGTCCTGACAAAGAAAATTTTAGCATGGAGCAGATGGCTTGCACCTTGAAAGAGAAAAGGAAAACTAAAGTTAACTCTGCCAGGGAAAGTAGTGCAGAT
GAAGCAGTGGGAACGAAGAATACAAAAAAGGAGGAAAGAATTCGTTTAATGGAAGAAAAGAAGCTAAAGAAAGAACAAGAGAAGTTGCAGAAAGCAGCTC
TTAAGGCTCAAGCAGCAGAGTTGAAAAAAATGGAGAAAGAAATGCAAAAGTGGGAAAAAGGGAAGTTTGCTCTAAATTCTATTGTTGCTGAATTTGACAC
TAGAGTAATTGAACATGGCTCAGTGGGAGGACCTCTGCTTACCAGGTTTGCTGATAAGGGCCTTACATATCGCGTAACATCAAATCCAATTGAAAGATCT
ATTCTGTGGACCATGAGTGCTCCAGAACATATTTCTCAGCTTTCTCGTGAAGCAACTGACATTCGATATGTAGCCCTTGTATATGAAGCAGAAGAGTTCT
GCAATCTTGTTATGAGTGAATCGCTCCTGGATCATGTGTCTTCAGTTCGAAGCCATTATCCTTCTCATACAATTTGCTATCTCACAATTAGGCTGATGGC
TTATGTCAATAAAAGGGGAAAGGAGCAGTACAAGCAGCAGGAAAATGATGATGGTTGGAGATGTCCATCTGTTGAAGAGGTGCTAGCGAAGTTAACCACA
CATTTTGTTAGGGTACATTATAGGCTGTGCACAGATGAAGCTGAGCTTGCTGATCATGTCTTTGGTTTGACACGCAGCTTGGCATCTTGTCAATTTAGAA
AGAAGTTAACACAACTATCCGTAAATGCTAATGGGTCCTTTATCCCTAAAGACTTCATTGACAGAAATTTAATAAAAAAGAGTCCATGGTTAAAAGCTTT
GGTAGCTATTCCAAAGGTGCAGCCACGGTTTGCTATTGCTATATGGAAGAAGTACCCTACCATGAAGTCTCTTTTGAGTGTATACATGGACCCTAACAAA
TCAGTGCACGAAAAGGAATTTCTGCTTGAGAATCTGACCACTGAGGGTTTCATTGGTGGTGAAAGAAGAGTGGGTCAGATTTGTTCAAAGCGAGTTTACA
GGATACTTATGGCTCAAAGTGGAAACATCATAACTGATAACGTTGAAGATGGTGCTGACTTTTTCAGAGACCACTCATCTTAA
AA sequence
>Potri.007G077400.8 pacid=42766637 polypeptide=Potri.007G077400.8.p locus=Potri.007G077400 ID=Potri.007G077400.8.v4.1 annot-version=v4.1
MWNPIILSDEEEENQKTPLPSLPKKPRTLPDPTILVLDVDDPTPHKSPSFVPETPLSDVSIVKCTFPQIRVPDFDPETLSGFCSCVKGNAGLICLESEND
EPESAKNWKDKTTMDAGYDEVEERRRWSTSTNFDSVDWLVDANVNQMSGVSSSQPSLSQDDIYQIDDCPDKENFSMEQMACTLKEKRKTKVNSARESSAD
EAVGTKNTKKEERIRLMEEKKLKKEQEKLQKAALKAQAAELKKMEKEMQKWEKGKFALNSIVAEFDTRVIEHGSVGGPLLTRFADKGLTYRVTSNPIERS
ILWTMSAPEHISQLSREATDIRYVALVYEAEEFCNLVMSESLLDHVSSVRSHYPSHTICYLTIRLMAYVNKRGKEQYKQQENDDGWRCPSVEEVLAKLTT
HFVRVHYRLCTDEAELADHVFGLTRSLASCQFRKKLTQLSVNANGSFIPKDFIDRNLIKKSPWLKALVAIPKVQPRFAIAIWKKYPTMKSLLSVYMDPNK
SVHEKEFLLENLTTEGFIGGERRVGQICSKRVYRILMAQSGNIITDNVEDGADFFRDHSS

DESeq2's median of ratios [POPLAR]

Mapped by: Order by: Show schematic diagram

Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol NWA:WTNWB:WTNWA:OE-ARK2NWB:OE-ARK2NWA:miRNA-ARK2NWB:miRNA-ARK2NW 0hrWT H20WT-NWTUA1dEY NWTUA1dEY+TUB15 NWTUA1dY+TUB9 NWPde NWNWA:WT GANWBWT GATW:WTTW:WT GANWA:OE-ARK2 GANWB:OE-ARK2 GATW:OE-ARK2TW:OE-ARK2 GANWA:miRNA-ARK2 GANWB:miRNA-ARK2 GATW:miRNA-ARK2TW:miRNA-ARK2 GATW 2hrTW 8hrTW 24hrTW 48hrTW 96hrTW 336hrWT ACC35S::etr1-1 H2035S::etr1-1 ACCLMX5::etr1-1 H20LMX5::etr1-1 ACCWT-TWTUA1dEY TWTUA1dEY+TUB15 TWTUA1dY+TUB9 TWPde TWOW:WTOW:WT GAOW:OE-ARK2OW:OE-ARK2 GAOW:miRNA-ARK2OW:miRNA-ARK2 GAOW 2hrOW 8hrOW 24hrOW 48hrOW 96hrOW 336hrRoot CTRRoot LongColdRoot LongDrougtRoot LongHeatRoot LongSaltRoot ShortColdRoot ShortDrougtRoot ShortHeatRoot ShortSaltPtr rootLeaf CTRLeaf LongColdLeaf LongDrougtLeaf LongHeatLeaf LongSaltLeaf ShortColdLeaf ShortDrougtLeaf ShortHeatLeaf ShortSaltPtr leafStem CTRStem LongColdStem LongDrougtStem LongHeatStem LongSaltStem ShortColdStem ShortDrougtStem ShortHeatStem ShortSaltPtr shootPtr xylemPtr phloemPtr fiberPtr vesselPtr fiber vessel ray
AT2G22140 ATEME1B essential meiotic endonuclease... Potri.007G077400
[exp]
0 1
AT4G38430 ATROPGEF1, ROPG... rho guanyl-nucleotide exchange... Potri.005G247100
[exp]
3.74 0.7549
AT1G13170 ORP1D OSBP(oxysterol binding protein... Potri.010G051400
[exp]
10.00 0.7505
AT2G37300 ABCI16 ATP-binding cassette I16, unkn... Potri.006G216300
[exp]
11.66 0.7506
AT5G20590 TBL5 TRICHOME BIREFRINGENCE-LIKE 5 ... Potri.006G071500
[exp]
17.14 0.7341
AT3G19340 Protein of unknown function (D... Potri.002G237700
[exp]
19.89 0.7505
AT1G12230 Aldolase superfamily protein (... Potri.001G120400
[exp]
20.14 0.7340
AT4G21890 unknown protein Potri.011G001800
[exp]
20.49 0.7221
AT1G55360 Protein of Unknown Function (D... Potri.003G221200
[exp]
21.93 0.7245
AT3G22190 IQD5 IQ-domain 5 (.1.2) Potri.001G215200
[exp]
23.49 0.7106
AT5G60020 LAC17, ATLAC17 laccase 17 (.1) Potri.001G341600
[exp]
27.92 0.6401

Potri.007G077400 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.