Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G54610 449 / 3e-152 Protein kinase superfamily protein (.1.2.3) AT1G53050 452 / 1e-151 Protein kinase superfamily protein (.1) AT1G71530 426 / 2e-144 Protein kinase superfamily protein (.1.2) AT5G44290 429 / 2e-143 Protein kinase superfamily protein (.1.2.3.4) AT1G74330 430 / 6e-143 Protein kinase superfamily protein (.1.2) AT1G09600 429 / 3e-142 Protein kinase superfamily protein (.1) AT5G50860 424 / 4e-142 Protein kinase superfamily protein (.1) AT1G18670 424 / 2e-140 IBS1 IMPAIRED IN BABA-INDUCED STERILITY 1, Protein kinase superfamily protein (.1) AT3G05050 418 / 1e-139 Protein kinase superfamily protein (.1) AT1G03740 421 / 3e-139 Protein kinase superfamily protein (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.005G086900 [exp] 768 / 0 AT1G53050 323 / 3e-102 Protein kinase superfamily protein (.1) Potri.002G065100 [exp] 634 / 0 AT1G54610 435 / 2e-146 Protein kinase superfamily protein (.1.2.3) Potri.008G204400 [exp] 459 / 2e-156 AT1G54610 719 / 0.0 Protein kinase superfamily protein (.1.2.3) Potri.013G032200 [exp] 453 / 1e-153 AT1G54610 787 / 0.0 Protein kinase superfamily protein (.1.2.3) Potri.005G045500 [exp] 452 / 6e-153 AT1G54610 769 / 0.0 Protein kinase superfamily protein (.1.2.3) Potri.001G399700 [exp] 453 / 8e-152 AT1G53050 1006 / 0.0 Protein kinase superfamily protein (.1) Potri.011G119400 [exp] 453 / 1e-151 AT1G53050 1011 / 0.0 Protein kinase superfamily protein (.1) Potri.012G103900 [exp] 442 / 3e-149 AT5G50860 709 / 0.0 Protein kinase superfamily protein (.1) Potri.015G103300 [exp] 442 / 3e-149 AT5G50860 716 / 0.0 Protein kinase superfamily protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10005801 [exp] 702 / 0 AT1G53050 468 / 2e-157 Protein kinase superfamily protein (.1) Lus10006800 [exp] 596 / 0 AT1G53050 449 / 7e-151 Protein kinase superfamily protein (.1) Lus10002469 [exp] 550 / 0 AT1G71530 429 / 3e-143 Protein kinase superfamily protein (.1.2) Lus10000584 [exp] 542 / 0 AT1G53050 429 / 1e-142 Protein kinase superfamily protein (.1) Lus10012805 [exp] 455 / 2e-154 AT1G54610 780 / 0.0 Protein kinase superfamily protein (.1.2.3) Lus10033975 [exp] 446 / 1e-150 AT1G54610 762 / 0.0 Protein kinase superfamily protein (.1.2.3) Lus10001715 [exp] 446 / 2e-150 AT1G54610 804 / 0.0 Protein kinase superfamily protein (.1.2.3) Lus10035892 [exp] 443 / 2e-149 AT1G53050 827 / 0.0 Protein kinase superfamily protein (.1) Lus10001285 [exp] 444 / 4e-149 AT1G71530 648 / 0.0 Protein kinase superfamily protein (.1.2) Lus10025773 [exp] 445 / 1e-148 AT1G53050 939 / 0.0 Protein kinase superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0016 [poplar] [flax] PKinase PF00069 [poplar] [flax] Pkinase Protein kinase domain
Representative CDS sequence Show only first row Show all	>Potri.007G077600.2 pacid=42766103 polypeptide=Potri.007G077600.2.p locus=Potri.007G077600 ID=Potri.007G077600.2.v4.1 annot-version=v4.1 ATGGGGTGTGTTCAGACCAAGAGTTCAACATACTCGCCTCCTCAGACACTAGAGAAGTTGAAACAAGAAAATGGGTATGTTAAGAGAGAGAATGGAGGGA GACCTACTGGTCAGAGAGAACTTGGAAAGTTGTTCAGGCAAGAATTGGACAAGAAGAGAGAGGTTGCCGTGAATGGTGCTGTCAATGGAGGAGATAAGTT GGTTGTGGGAGAAGGGTTAAAGAATGATGTTGGAAATGTGTCACAAAGATTTTCTTCGAAGAAGGCAGGGGGAGAGGAACTTGTAGATGGGTGGCCAAAA TGGCTTGTTGACAACATTGCTGGAGATGTTTTGGCTGGTTTGGTTCCAAAGAGTGCTGATTCTTATGATAAGCTAGCTAAGGTAGGCCAGGGAACTTATA GCAATGTGTATAAAGCTCGAGATAGGGACACTGGAAAGATAGTTGCTCTAAAGAAGGTTCGGTTTGACACATCAGAGCCTGAAAGTGTCAAGTTTATGGC AAGAGAAATAATGATGCTACAGAAGCTAGATCATCCAAATGTAATCAAGCTTGAAGGACTAGCCACATCAAGGATGCAATATAGTCTTTATCTTGTCTTT GATCTCATGCAGTCAGACCTAACCAGGATCATCTCTCGTCCAGGCGAAAGGCTCACTGAACCACAGGTCAAATGCTACATGCAGCAACTGCTTTCAGGTC TCCAGCACTGCCATGAGAGGGGTATTCTGCACAGAGACATTAAAGCTTCCAACTTGTTGATAGACAAAAATGGGATGCTGAAAATCGCAGATTTCGGGCT AGCAAATTTCTTCATACCTAAACCAAAACGACCCCTTACCAACAGAGTGGTAACACTTTGGTATAGAGCCCCAGAGCTATTATTAGGTTCCACTGATTAT GGAGTAGGTATTGATCTTTGGAGTGCTGGTTGCTTATTGGCTGAGATGTTCATTGGAAGGCCAATCATGCCTGGAAGGACAGAGGTTGAGCAACTTCATA GGATTTTCAAGCTCTGTGGTTCACCACCAGAGGATTATTGGAAGATAATGAGGCTACCAACAAGTTTCAGACCACCTCAGCACTACAAACCTAGTTTCCA AGAAGCCTTTAAGGATTTTCCTGAGTCTTCACTTGTCCTCTTGACCACACTTCTCGCTCTGAACCCAGCATATCGAGGCACTGCTGCTTCTGCTCTCCAA AGTCACTTCTTCTCTTCGAGTCCAATGGCATGCGAACTTTCAGGTCTACCAGTAATTTACAAAGAGGAGGATGAGCCAAATCAAATCGATGATCGGAAAA AGCGCAGGAATCCAAAGAAGCACTCATCTCGAGCAAGACAAGGTGGTCAAGGGAGAAAGAACTCATTTTCTCAACGTGCCAAAGAAGAAACAGAATCTTC TAAAGAGGTGGCGAAAATCTCAGAGCCAAGCATGAATTATGGCCTTGAGACAGGAAACAGTGCAAGCAGCAGCACATCCTGGGGTCTAAAATCAATACTG AGGCAAGAACAAGGCCTCCCGCGGCCATCCTTCTCGCCGATTCTTGATCAGAATCAGAACAGATCGATAAGAACGGAGGCTCATCCTAATGCTACCAAGA ACATCCAGAATTTCACCCTTTTACAGGCTTCTATAACAGACATCATTAACCTTAATGGAGGCAATGCAATGCCAGGTGGTTACCGCCGGTCTGTTTCTAC GCTGGACGTTCGTGCTCTTGATCCAGAAAAAATATCAAAACTCTTTGGACTTGATAAAGATTAG
AA sequence Show only first row Show all	>Potri.007G077600.2 pacid=42766103 polypeptide=Potri.007G077600.2.p locus=Potri.007G077600 ID=Potri.007G077600.2.v4.1 annot-version=v4.1 MGCVQTKSSTYSPPQTLEKLKQENGYVKRENGGRPTGQRELGKLFRQELDKKREVAVNGAVNGGDKLVVGEGLKNDVGNVSQRFSSKKAGGEELVDGWPK WLVDNIAGDVLAGLVPKSADSYDKLAKVGQGTYSNVYKARDRDTGKIVALKKVRFDTSEPESVKFMAREIMMLQKLDHPNVIKLEGLATSRMQYSLYLVF DLMQSDLTRIISRPGERLTEPQVKCYMQQLLSGLQHCHERGILHRDIKASNLLIDKNGMLKIADFGLANFFIPKPKRPLTNRVVTLWYRAPELLLGSTDY GVGIDLWSAGCLLAEMFIGRPIMPGRTEVEQLHRIFKLCGSPPEDYWKIMRLPTSFRPPQHYKPSFQEAFKDFPESSLVLLTTLLALNPAYRGTAASALQ SHFFSSSPMACELSGLPVIYKEEDEPNQIDDRKKRRNPKKHSSRARQGGQGRKNSFSQRAKEETESSKEVAKISEPSMNYGLETGNSASSSTSWGLKSIL RQEQGLPRPSFSPILDQNQNRSIRTEAHPNATKNIQNFTLLQASITDIINLNGGNAMPGGYRRSVSTLDVRALDPEKISKLFGLDKD

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G54610			Protein kinase superfamily pro...		Potri.007G077600 [exp]	0	1
AT4G09890			Protein of unknown function (D...		Potri.007G077500 [exp]	1.00	0.9202
AT3G25400			unknown protein		Potri.008G168700 [exp]	10.81	0.8164
					Potri.001G247000 [exp]	12.24	0.8589
AT1G68300			Adenine nucleotide alpha hydro...		Potri.013G112300 [exp]	12.36	0.8057
					Potri.001G141701 [exp]	13.41	0.8589
AT5G48630			Cyclin family protein (.1.2)		Potri.014G194900 [exp]	24.26	0.8242
AT3G43630			Vacuolar iron transporter (VIT...		Potri.002G069400 [exp]	26.73	0.8444
AT5G24090		ATCHIA	chitinase A (.1)		Potri.002G165700 [exp]	29.54	0.8472	CHI3.11
AT4G37540	AS2	LBD39	LOB domain-containing protein ...		Potri.014G017400 [exp]	29.98	0.8249
					Potri.012G054000 [exp]	31.55	0.8456

Compare expression of checked genes

Potri.007G077600 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.