Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol	Pt-BRI1.2
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G39400 1428 / 0 DWF2, CBB2, BIN1, BRI1, ATBRI1 DWARF 2, CABBAGE 2, BRASSINOSTEROID INSENSITIVE 1, BR INSENSITIVE 1, Leucine-rich receptor-like protein kinase family protein (.1) AT1G55610 894 / 0 BRL1 BRI1 like (.1.2) AT3G13380 894 / 0 BRL3 BRI1-like 3 (.1) AT2G01950 831 / 0 VH1, BRL2 VASCULAR HIGHWAY 1, BRI1-like 2 (.1) AT5G07280 520 / 4e-164 EXS, EMS1 EXTRA SPOROGENOUS CELLS, EXCESS MICROSPOROCYTES1, Leucine-rich repeat transmembrane protein kinase (.1) AT1G74360 459 / 3e-142 Leucine-rich repeat protein kinase family protein (.1) AT5G53890 446 / 2e-138 AtPSKR2 phytosylfokine-alpha receptor 2 (.1) AT2G02220 442 / 5e-137 ATPSKR1 phytosulfokin receptor 1 (.1) AT4G20140 446 / 4e-136 GSO1 GASSHO1, Leucine-rich repeat transmembrane protein kinase (.1) AT1G72300 434 / 4e-133 Leucine-rich receptor-like protein kinase family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.005G086500 [exp] 1942 / 0 AT4G39400 1398 / 0.0 DWARF 2, CABBAGE 2, BRASSINOSTEROID INSENSITIVE 1, BR INSENSITIVE 1, Leucine-rich receptor-like protein kinase family protein (.1) Potri.011G169600 [exp] 951 / 0 AT1G55610 1500 / 0.0 BRI1 like (.1.2) Potri.001G472900 [exp] 945 / 0 AT1G55610 1485 / 0.0 BRI1 like (.1.2) Potri.008G140500 [exp] 846 / 0 AT2G01950 1535 / 0.0 VASCULAR HIGHWAY 1, BRI1-like 2 (.1) Potri.010G101100 [exp] 830 / 0 AT2G01950 1510 / 0.0 VASCULAR HIGHWAY 1, BRI1-like 2 (.1) Potri.015G141200 [exp] 519 / 5e-163 AT5G07280 1347 / 0.0 EXTRA SPOROGENOUS CELLS, EXCESS MICROSPOROCYTES1, Leucine-rich repeat transmembrane protein kinase (.1) Potri.012G139000 [exp] 515 / 2e-161 AT5G07280 1377 / 0.0 EXTRA SPOROGENOUS CELLS, EXCESS MICROSPOROCYTES1, Leucine-rich repeat transmembrane protein kinase (.1) Potri.001G398500 [exp] 476 / 3e-149 AT5G53890 1268 / 0.0 phytosylfokine-alpha receptor 2 (.1) Potri.003G074000 [exp] 476 / 1e-148 AT1G72300 1215 / 0.0 Leucine-rich receptor-like protein kinase family protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10033533 [exp] 1537 / 0 AT4G39400 1492 / 0.0 DWARF 2, CABBAGE 2, BRASSINOSTEROID INSENSITIVE 1, BR INSENSITIVE 1, Leucine-rich receptor-like protein kinase family protein (.1) Lus10020835 [exp] 1520 / 0 AT4G39400 1486 / 0.0 DWARF 2, CABBAGE 2, BRASSINOSTEROID INSENSITIVE 1, BR INSENSITIVE 1, Leucine-rich receptor-like protein kinase family protein (.1) Lus10005784 [exp] 1379 / 0 AT4G39400 1361 / 0.0 DWARF 2, CABBAGE 2, BRASSINOSTEROID INSENSITIVE 1, BR INSENSITIVE 1, Leucine-rich receptor-like protein kinase family protein (.1) Lus10006817 [exp] 1370 / 0 AT4G39400 1356 / 0.0 DWARF 2, CABBAGE 2, BRASSINOSTEROID INSENSITIVE 1, BR INSENSITIVE 1, Leucine-rich receptor-like protein kinase family protein (.1) Lus10038726 [exp] 836 / 0 AT2G01950 1501 / 0.0 VASCULAR HIGHWAY 1, BRI1-like 2 (.1) Lus10039132 [exp] 819 / 0 AT2G01950 1503 / 0.0 VASCULAR HIGHWAY 1, BRI1-like 2 (.1) Lus10038875 [exp] 481 / 7e-149 AT5G07280 1248 / 0.0 EXTRA SPOROGENOUS CELLS, EXCESS MICROSPOROCYTES1, Leucine-rich repeat transmembrane protein kinase (.1) Lus10014996 [exp] 478 / 1e-147 AT5G07280 1264 / 0.0 EXTRA SPOROGENOUS CELLS, EXCESS MICROSPOROCYTES1, Leucine-rich repeat transmembrane protein kinase (.1) Lus10005403 [exp] 471 / 3e-147 AT5G53890 1248 / 0.0 phytosylfokine-alpha receptor 2 (.1) Lus10009213 [exp] 460 / 3e-143 AT5G53890 1258 / 0.0 phytosylfokine-alpha receptor 2 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0016 [poplar] [flax] PKinase PF00069 [poplar] [flax] Pkinase Protein kinase domain CL0022 [poplar] [flax] LRR PF00560 [poplar] [flax] LRR_1 Leucine Rich Repeat CL0022 [poplar] [flax] PF08263 [poplar] [flax] LRRNT_2 Leucine rich repeat N-terminal domain CL0022 [poplar] [flax] LRR PF13855 [poplar] [flax] LRR_8 Leucine rich repeat
Representative CDS sequence Show only first row Show all	>Potri.007G078100.1 pacid=42766748 polypeptide=Potri.007G078100.1.p locus=Potri.007G078100 ID=Potri.007G078100.1.v4.1 annot-version=v4.1 ATGAACCCATCGACAAAAATGAAAGCCCACTTCCTTGCTTTGCTTCTCTCTCTTACCTTTCTCTCTCTACAAGCCTCACCACCACCTTTCCTTAGCTCAA CAAACGAAGACACCCAAAACCTTATCAACTTCAAGACCACCCTCTCTAACCCATCTCTCCTTCAAAACTGGCTTCCTAACCAAAACCCTTGTACCTTCAC TGGAGTTAAATGCCATGAAACCACTAACAGAGTCACCTCTATTGGCCTCGCTAACATTTCTTTATCTTGTGATTTTCACTCTGTGGCTACATTTCTTTTG ACTCTTGAGAGCTTAGAGAGCCTTTCTTTGAAATCAGCCAACATTTCTGGCTCTATTTCTTTCCCTCCTGGATCTAAGTGCAGCTCCGTTTTGAGCTACT TAGATCTATCTCAGAGTAGCCTCTCAGGTTCTGTCTCTGATATAGCCACTTTACGTTCTTGTCCAGCCTTGAAATCCCTGGACCTTTCTGGCAACTCCAT TGAGTTTTCAGTGCATGAAGAGAAATCAAGTGGGCTAAGAGGGCTCAGCTTTAAGTTTCTTGATCTTTCTTTCAATAAGATTGTAGGCTCAAACGCGGTG CCTTTTATTTTATCTGAAGGCTGCAATGAGTTGAAGCACTTGGCTTTGAAGGGAAATAAATTGAGCGGAGATATTGATTTTTCAAGTTGCAAGAATCTCC AGTATCTTGATGTCTCTGCAAACAATTTCTCTTCGAGTGTTCCCTCGTTTGGTAAATGTTTAGCTCTGGAGCATCTTGATATCTCTGCCAATAAGTTTTA TGGTGATCTTGGTCATGCTATTGGTGCTTGTGTTAAGCTCAACTTCTTGAATGTTTCAAGCAACAAGTTTTCAGGTTCAATTCCAGTGCTTCCAACCGCG AGTTTGCAGTCTCTTTCACTTGGTGGAAACCTTTTTGAAGGGGGGATTCCTTTGCATCTAGTGGATGCTTGTCCAGGTCTTTTTATGCTTGATCTTTCCT CAAATAATCTAACTGGTTCTGTCCCTAGTAGTCTTGGTTCTTGCACTTCATTGGAAACTCTTCATATTTCTATCAACAACTTCACTGGTGAATTGCCTGT TGATACTTTATTGAAAATGACAAGTCTGAAGAGGCTCGATTTGGCATATAATGCTTTTACTGGTGGTTTGCCTGATTCTTTCTCACAGCACGCTAGTTTG GAGTCTTTAGATCTGAGTTCTAATAGTTTATCTGGGCCAATCCCTACTGGTTTGTGTCGAGGTCCAAGTAACAACTTGAAGGAGCTGTATCTTCAAAACA ATAGGTTTACTGGGTCTGTTCCTGCTACCCTCAGTAACTGCTCTCAACTCACGGCACTCCATTTGAGCTTCAATTACCTCACTGGAACCATCCCTTCGAG CTTGGGATCGCTCTATGAGCTTCGTGACTTGAACCTTTGGTTTAATCAGCTCCATGGAGAAATCCCACCTGAGTTAATGAACATAGAAGCATTGGAGACT CTGATTCTGGACTTCAATGAGTTGACAGGAGTGATACCTTCAGGTATAAGCAACTGCACCAACCTTAACTGGATCTCATTGTCTAACAATCGGTTAAGTG GTGAGATTCCAGCATCGATTGGCAAGCTTGGGAGTCTGGCAATTCTCAAGCTGAGCAACAACTCCTTCTATGGTAGAATCCCACCAGAGCTTGGAGACTG TCGTAGCTTGATTTGGTTGGATCTTAATTCCAATTTCCTCAATGGAACAATCCCACCCGAGCTGTTCAAACAGTCTGGCAGCATTGCTGTCAATTTTATC AGAGGAAAGAGGTACGTGTATCTGAAGAATGCAAAAAGCGAACAGTGTCACGGGGAGGGAAATTTGCTTGAGTTTGCCGGAATAAGATGGGAGCAGCTGA ACAGAATCTCCAGCAGCCACCCCTGCAACTTTTCCAGAGTATATGGAGAGTACACCCAGCCCACATTTAATGATAATGGATCGATGATCTTCCTTGATCT TTCTTACAATATGTTGTCCGGCAGTATTCCAGCAGCGATTGGGAGTATGTCATACCTCTATGTCTTGATCTTGGGTCATAATAATTTCTCTGGAAACATT CCACAAGAGATTGGAAAGTTGACTGGTCTTGACATTCTTGACCTCTCCAACAATAGGCTTGAAGGGATAATTCCTCCGTCGATGACTGGCCTTTCATTGC TTTCGGAGATTGATATGTCCAACAATCACCTCACTGGAATGATTCCTGAAGGGGGTCAGTTTGTAACATTTTTAAATCATAGTTTCGTCAACAACTCAGG CCTCTGTGGAATACCTCTTCCTCCATGTGGGTCAGCTTCAGGATCAAGCTCGAATATTGAGCATCAGAAGTCTCATAGGAGACTGGCATCTCTGGCAGGG AGTGTGGCAATGGGATTGTTGTTCTCGCTTTTCTGCATCTTTGGTTTGCTTATTGTTGTTGTGGAAATGAAGAAGAGGAAGAAAAAGAAGGATTCAGCCC TTGATGTCTATATAGACAGCCGCTCACACTCTGGCACCGCAAATACTGCCTGGAAGCTGACTGGTCGTGAAGCATTAAGCATCAGCATCGCCACATTTGA GTCAAAGCCCCTGCGGAATCTCACTTTTCCAGATCTTCTTGAAGCAACAAATGGCTTCCACAATGATAGCCTTATAGGCTCTGGAGGTTTTGGTGATGTG TACAAAGCAGAACTGAAAGATGGAAGCATTGTAGCCATCAAGAAACTGATACATATCAGTGGACAAGGAGATAGAGAATTCACTGCTGAAATGGAGACCA TTGGCAAAATCAAGCACCGGAACCTTGTTCCACTCCTTGGTTACTGCAAGGTAGGAGAAGAGCGAATCTTGGTGTATGAGTACATGAAATATGGTAGTTT GGAAGATGTTCTACATAACCAAAAGAAAACTGGGATCAGACTGAACTGGGCTGCAAGAAGAAAGATTGCCATCGGTGCTGCCAGAGGATTAACTTTTCTT CACCATAGTTGCATCCCACTTATCATTCACAGGGACATGAAATCTAGCAATGTCTTGCTTGATGAGAACTTGGAGGCCAGAGTTTCCGATTTTGGAATGG CGAGGCTTATGAGTACAATGGACACTCATTTGAGTGTTAGCACATTAGCAGGCACACCTGGTTATGTCCCGCCCGAATACTACCAAAGCTTTAGGTGCTC CATCAAAGGGGATGTTTACAGTTTCGGTGTAGTCTTGCTTGAGTTGCTGACAGGAAAAAGGCCAACAGATTCATCTGATTTTGGTGACAATAATCTTGTT GGGTGGGTGAAGCAGCATGCCAAATTGAGAATAAGCGATGTTTTTGATCCAGTGCTCTTAAAAGAGGATCCAAACCTTGAGATGGAGCTCCTACAACATT TGAAGGTAGCTTGTGCTTGTCTAGATGATCGGCCATGGAGACGACCCACAATGATTCAAGTAATGGCAACGTTTAAAGAAATTCAAGCAGGGTCTGGCCT TGACTCACAATCCACAACCGGCACCGAAGATGGAGGTTTTAGTGCAGTTGAAATGGTAGAGATGAGCATAAAAGAAGGGCCAGAGCTAAGCAAGCAGTAG
AA sequence Show only first row Show all	>Potri.007G078100.1 pacid=42766748 polypeptide=Potri.007G078100.1.p locus=Potri.007G078100 ID=Potri.007G078100.1.v4.1 annot-version=v4.1 MNPSTKMKAHFLALLLSLTFLSLQASPPPFLSSTNEDTQNLINFKTTLSNPSLLQNWLPNQNPCTFTGVKCHETTNRVTSIGLANISLSCDFHSVATFLL TLESLESLSLKSANISGSISFPPGSKCSSVLSYLDLSQSSLSGSVSDIATLRSCPALKSLDLSGNSIEFSVHEEKSSGLRGLSFKFLDLSFNKIVGSNAV PFILSEGCNELKHLALKGNKLSGDIDFSSCKNLQYLDVSANNFSSSVPSFGKCLALEHLDISANKFYGDLGHAIGACVKLNFLNVSSNKFSGSIPVLPTA SLQSLSLGGNLFEGGIPLHLVDACPGLFMLDLSSNNLTGSVPSSLGSCTSLETLHISINNFTGELPVDTLLKMTSLKRLDLAYNAFTGGLPDSFSQHASL ESLDLSSNSLSGPIPTGLCRGPSNNLKELYLQNNRFTGSVPATLSNCSQLTALHLSFNYLTGTIPSSLGSLYELRDLNLWFNQLHGEIPPELMNIEALET LILDFNELTGVIPSGISNCTNLNWISLSNNRLSGEIPASIGKLGSLAILKLSNNSFYGRIPPELGDCRSLIWLDLNSNFLNGTIPPELFKQSGSIAVNFI RGKRYVYLKNAKSEQCHGEGNLLEFAGIRWEQLNRISSSHPCNFSRVYGEYTQPTFNDNGSMIFLDLSYNMLSGSIPAAIGSMSYLYVLILGHNNFSGNI PQEIGKLTGLDILDLSNNRLEGIIPPSMTGLSLLSEIDMSNNHLTGMIPEGGQFVTFLNHSFVNNSGLCGIPLPPCGSASGSSSNIEHQKSHRRLASLAG SVAMGLLFSLFCIFGLLIVVVEMKKRKKKKDSALDVYIDSRSHSGTANTAWKLTGREALSISIATFESKPLRNLTFPDLLEATNGFHNDSLIGSGGFGDV YKAELKDGSIVAIKKLIHISGQGDREFTAEMETIGKIKHRNLVPLLGYCKVGEERILVYEYMKYGSLEDVLHNQKKTGIRLNWAARRKIAIGAARGLTFL HHSCIPLIIHRDMKSSNVLLDENLEARVSDFGMARLMSTMDTHLSVSTLAGTPGYVPPEYYQSFRCSIKGDVYSFGVVLLELLTGKRPTDSSDFGDNNLV GWVKQHAKLRISDVFDPVLLKEDPNLEMELLQHLKVACACLDDRPWRRPTMIQVMATFKEIQAGSGLDSQSTTGTEDGGFSAVEMVEMSIKEGPELSKQ

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT4G39400		DWF2, CBB2, BIN...	DWARF 2, CABBAGE 2, BRASSINOST...		Potri.007G078100 [exp]	0	1	Pt-BRI1.2
AT4G39400		DWF2, CBB2, BIN...	DWARF 2, CABBAGE 2, BRASSINOST...		Potri.005G086500 [exp]	1.00	0.9172	Pt-BRI1.1
AT3G62980		AtTIR1, TIR1	TRANSPORT INHIBITOR RESPONSE 1...		Potri.002G207800 [exp]	2.00	0.8845	Pt-TIR1.1,FBL2
AT5G64330		JK218, RPT3, NP...	ROOT PHOTOTROPISM 3, NON-PHOTO...		Potri.007G112600 [exp]	3.74	0.8464
AT3G20540		PolIB, POLGAMMA...	polymerase I B, polymerase gam...		Potri.001G421300 [exp]	4.24	0.8757
AT4G13730			Ypt/Rab-GAP domain of gyp1p su...		Potri.006G069300 [exp]	5.74	0.8511
AT1G33540		SCPL18	serine carboxypeptidase-like 1...		Potri.001G291700 [exp]	7.07	0.8519
AT1G07570		APK1A	Protein kinase superfamily pro...		Potri.001G240400 [exp]	7.21	0.8465	Pt-APK1.2
AT3G63420		AGG1, ATAGG1	Ggamma-subunit 1 (.1.2)		Potri.005G179600 [exp]	7.48	0.8559
AT1G21830			unknown protein		Potri.005G177600 [exp]	7.74	0.8458
AT5G15410		ATCNGC2, DND1	DEFENSE NO DEATH 1, CYCLIC NUC...		Potri.017G089800 [exp]	8.00	0.8185

Compare expression of checked genes

Potri.007G078100 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.