Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G20860 583 / 0 LIP1 lipoic acid synthase 1 (.1) AT5G08415 365 / 1e-124 Radical SAM superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.005G086200 [exp] 702 / 0 AT2G20860 582 / 0.0 lipoic acid synthase 1 (.1) Potri.013G136000 [exp] 367 / 2e-125 AT5G08415 566 / 0.0 Radical SAM superfamily protein (.1) Potri.019G102700 [exp] 363 / 5e-124 AT5G08415 545 / 0.0 Radical SAM superfamily protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10031630 [exp] 612 / 0 AT2G20860 581 / 0.0 lipoic acid synthase 1 (.1) Lus10041005 [exp] 359 / 2e-122 AT5G08415 553 / 0.0 Radical SAM superfamily protein (.1) Lus10013451 [exp] 342 / 3e-115 AT5G08415 536 / 0.0 Radical SAM superfamily protein (.1) Lus10033710 [exp] 350 / 3e-113 AT1G71840 489 / 2e-166 transducin family protein / WD-40 repeat family protein (.1) Lus10001348 [exp] 79 / 2e-17 ND 78 / 3e-17
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0036 [poplar] [flax] TIM_barrel PF04055 [poplar] [flax] Radical_SAM Radical SAM superfamily CL0036 [poplar] [flax] PF16881 [poplar] [flax] LIAS_N N-terminal domain of lipoyl synthase of Radical_SAM family
Representative CDS sequence Show only first row Show all	>Potri.007G078400.1 pacid=42766378 polypeptide=Potri.007G078400.1.p locus=Potri.007G078400 ID=Potri.007G078400.1.v4.1 annot-version=v4.1 ATGCAATCACGCTTCACATCCTTGGCAACTCGCACCCTCAAATCCACAACCACCAAAGCCAAAAATTGCAATTTCTCCTCCTCCACAACCGAATCCTCCA CCAAACAACACCCACAATTCCCCGAAACCCTAGCCGGTCTGCGAGCTCGATTATCCGCCGAATCCCCTGCGCTTGGCGATTTCATCGACCTCCAATCCAA CAACACCTACTCCGTCGAAGTTGGAACAAAAAAGAAATCACTCCCAAAACCTAAATGGATGAGAGAAGCCATTCCGGGCGGCGAAAAGTACGTTCAGATT AAGAAGAAATTGAGAGAATTGAAACTCCATACTGTTTGCGAAGAAGCTAAATGTCCTAATTTGGGGGAGTGCTGGTCCGGTGGCGAAACCGGCACTGCCA CTGCTACGATTATGATTCTCGGCGATACTTGTACTCGTGGCTGCCGGTTTTGTAATGTGAAGACATCGCGGACGCCTCCTCCGCCTGACCCGAATGAGCC TACTAATGTGGCAGAGGCAATTGCGTCGTGGGGTTTGGATTATGTTGTGATCACGAGTGTGGATCGTGATGATTTGACTGATCAAGGGAGTGGTCATTTT GCGGAAACTGTGCGGAAGTTGAAGACACTCAAGCCAAACATGCTTATCGAAGCCTTAGTTCCTGATTTTCGAGGAGACCGTGGTTGTGTAGAGAAAGTTG CAACATCAGGACTGGATGTCTTTGCTCACAACATTGAAACAGTTGAAGAACTTCAAAGTTCTGTACGGGATCGTCGTGCTAATTTTAAGCAATCTTTAGA TGTTTTAGTGATGGCTAAAGAATATGCTCCAGCTGGGACACTTACCAAGACTTCAGTAATGTTGGGTTGTGGGGAAACGCCTGAACAAGTTGTGAAAACA ATGGAAAAGGTGAGAGCTGCAGGTATTGATGTGATGACGTTTGGCCAGTATATGAGACCATCTAAACGTCATATGCCAGTATCTGAATACATTACCCCTG ATGCTTTCGAGAAGTATAGAACACTTGGCATGGAAATGGGATTTCGATATGTGGCATCTGGTCCCATGGTTAGGTCATCATACAAGGCAGGTGAATTCTA CATCAAATCCATGATAGAATCCGATCGGTCTGCCTCCTCGCAGCTTCCTATCTCCTGA
AA sequence Show only first row Show all	>Potri.007G078400.1 pacid=42766378 polypeptide=Potri.007G078400.1.p locus=Potri.007G078400 ID=Potri.007G078400.1.v4.1 annot-version=v4.1 MQSRFTSLATRTLKSTTTKAKNCNFSSSTTESSTKQHPQFPETLAGLRARLSAESPALGDFIDLQSNNTYSVEVGTKKKSLPKPKWMREAIPGGEKYVQI KKKLRELKLHTVCEEAKCPNLGECWSGGETGTATATIMILGDTCTRGCRFCNVKTSRTPPPPDPNEPTNVAEAIASWGLDYVVITSVDRDDLTDQGSGHF AETVRKLKTLKPNMLIEALVPDFRGDRGCVEKVATSGLDVFAHNIETVEELQSSVRDRRANFKQSLDVLVMAKEYAPAGTLTKTSVMLGCGETPEQVVKT MEKVRAAGIDVMTFGQYMRPSKRHMPVSEYITPDAFEKYRTLGMEMGFRYVASGPMVRSSYKAGEFYIKSMIESDRSASSQLPIS

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT2G20860		LIP1	lipoic acid synthase 1 (.1)		Potri.007G078400 [exp]	0	1
AT2G45630			D-isomer specific 2-hydroxyaci...		Potri.014G073500 [exp]	28.30	0.8265
AT2G20860		LIP1	lipoic acid synthase 1 (.1)		Potri.005G086200 [exp]	46.24	0.8080	Pt-LIP1.1
AT2G42040			unknown protein		Potri.006G193300 [exp]	83.83	0.8084
AT5G43745			Protein of unknown function (D...		Potri.010G078600 [exp]	100.00	0.7927

Compare expression of checked genes

Potri.007G078400 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.