Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G39470 314 / 6e-106 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT3G18420 158 / 1e-45 Protein prenylyltransferase superfamily protein (.1) AT3G53560 141 / 6e-39 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT5G02590 138 / 7e-38 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT2G37400 136 / 5e-37 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT3G09490 107 / 2e-26 Tetratricopeptide repeat (TPR)-like superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.005G085700 [exp] 565 / 0 AT4G39470 296 / 7e-99 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.008G143600 [exp] 153 / 1e-43 AT3G18420 356 / 4e-123 Protein prenylyltransferase superfamily protein (.1) Potri.010G098500 [exp] 151 / 1e-42 AT3G18420 328 / 5e-112 Protein prenylyltransferase superfamily protein (.1) Potri.016G080000 [exp] 143 / 1e-39 AT2G37400 342 / 4e-117 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.006G213600 [exp] 139 / 3e-38 AT3G53560 327 / 1e-111 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.008G142980 [exp] 113 / 3e-30 AT3G18420 244 / 5e-82 Protein prenylyltransferase superfamily protein (.1) Potri.016G081200 [exp] 71 / 2e-15 AT3G53560 127 / 2e-37 Tetratricopeptide repeat (TPR)-like superfamily protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10035707 [exp] 280 / 5e-93 AT4G39470 257 / 3e-84 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10024433 [exp] 130 / 1e-34 AT2G37400 271 / 1e-89 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10031923 [exp] 128 / 6e-34 AT3G18420 270 / 2e-89 Protein prenylyltransferase superfamily protein (.1) Lus10025299 [exp] 126 / 5e-33 AT2G37400 272 / 3e-89 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10035087 [exp] 83 / 4e-19 AT3G18420 133 / 6e-39 Protein prenylyltransferase superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0020 [poplar] [flax] TPR PF13371 [poplar] [flax] TPR_9 Tetratricopeptide repeat CL0020 [poplar] [flax] TPR PF14559 [poplar] [flax] TPR_19 Tetratricopeptide repeat
Representative CDS sequence Show only first row Show all	>Potri.007G079200.1 pacid=42765930 polypeptide=Potri.007G079200.1.p locus=Potri.007G079200 ID=Potri.007G079200.1.v4.1 annot-version=v4.1 ATGGGTTCAATAAAAACATTCTCTCCATGCTCCCCACCCTCACATTTTCAGAATTTGAAATCGTCAAAAAACTGTAACTCCTCAACTTCTTTGAAGCCAC TACTATGTTCCATGAATCCACTCAACATCCACAGCAGGCACAAACTGCACATCTCATCAAATATCTGTTCTAAGTCACCATTTCCTCAGATACCCACTTC AAGTATCTCCAAAAAAAACAACAATTTCACCAGTTTTTTGTCTGAGAAGGTGCTGGTTTCCCTTGTTGGGGCCTTCATTTTTATTGGTTCTTTTGGTTTA AATACTAGGCAAAGTTTGGCACTTCCGGCTCAAACAAGTGGTGGTAGTGTGAATTTAGAGGGAAAGAGAGATGCCCAGATGGAGAAAAGTGAGGACGAGG AGATGTATGAGAAGGTTTTGGAGAAGGAGCCAAGGAATGTGGAGGCATTGAAGGTGGTTCTGCATGGGAAGATGAGGAGAGGACAGACTAAAGAGGCTGT GAAGTATGTTGGGAGGTTGATTGAGATCGAGCCCGAGGAAGTTGAATGGAGGCTTTTGGAGGCACTTTGTTATGAGATGATGGGGCAATTGAACAAGGCT AAAAGGTTGTTCAACGAAATCTTGGAAGAGAGACCACTTTTGCTTAGAGCTTTGCACGGTTTAGCACTGGTTATGCACAAAAATCTTGAAGGTCCTGCTG TCTTTGAGATGCTGAATAAAGCTCTAGAAGTTGCCCATCGTGAAAAAAGAGTAACTGAGGAGAGAAACATTAGAATTCTAATTGCGCAAATGCATGTTGT CAAGGGGGATTTTGAGGAGGCTTTGAAGAAATTTCAAGGCCTGGTTAGCGACAACCCACGAGATTTTCGACCTTATCTTTGCCAGGGAATAATATACAGT CTGTTGGATAGAAAAGAAGAAGCTGCAGAACAGTTTGAGACATATCGGAGTCTTGTGCCTGAAGAATTTCCACAAAGGATATTTCTTGATGATGTTGTAT TGGAAGCAAAAACCAAGTCCAGGGAGCGGTTTCAAAAGGAGTTTCAAGCTGAATTCTCGTACAGGAAGTAA
AA sequence Show only first row Show all	>Potri.007G079200.1 pacid=42765930 polypeptide=Potri.007G079200.1.p locus=Potri.007G079200 ID=Potri.007G079200.1.v4.1 annot-version=v4.1 MGSIKTFSPCSPPSHFQNLKSSKNCNSSTSLKPLLCSMNPLNIHSRHKLHISSNICSKSPFPQIPTSSISKKNNNFTSFLSEKVLVSLVGAFIFIGSFGL NTRQSLALPAQTSGGSVNLEGKRDAQMEKSEDEEMYEKVLEKEPRNVEALKVVLHGKMRRGQTKEAVKYVGRLIEIEPEEVEWRLLEALCYEMMGQLNKA KRLFNEILEERPLLLRALHGLALVMHKNLEGPAVFEMLNKALEVAHREKRVTEERNIRILIAQMHVVKGDFEEALKKFQGLVSDNPRDFRPYLCQGIIYS LLDRKEEAAEQFETYRSLVPEEFPQRIFLDDVVLEAKTKSRERFQKEFQAEFSYRK

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT4G39470			Tetratricopeptide repeat (TPR)...		Potri.007G079200 [exp]	0	1
AT4G14910		HISN5B, IGPD	HISTIDINE BIOSYNTHESIS 5B (.1....		Potri.010G087600 [exp]	3.46	0.9471
AT4G25370			Double Clp-N motif protein (.1...		Potri.015G131700 [exp]	4.58	0.9455
AT2G03050		SOLDAT10, EMB93	SINGLET OXYGEN-LINKED DEATH AC...		Potri.010G167400 [exp]	4.89	0.9396
					Potri.006G028500 [exp]	5.47	0.9363
AT3G24800		PRT1	proteolysis 1 (.1)		Potri.001G049300 [exp]	5.74	0.9482
AT5G23070			Thymidine kinase (.1)		Potri.006G015800 [exp]	6.00	0.9258
AT1G15660		CENP-C	CENP-C HOMOLOGUE, centromere p...		Potri.003G056600 [exp]	9.00	0.9294
AT3G07440			unknown protein		Potri.002G250500 [exp]	10.09	0.8928
AT4G38100			unknown protein		Potri.005G147801 [exp]	15.00	0.8978
AT5G63050		EMB2759	embryo defective 2759 (.1.2)		Potri.012G088600 [exp]	18.22	0.8961

Compare expression of checked genes

Potri.007G079200 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.