Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G10490 1463 / 0 Domain of unknown function (DUF1726) ;Putative ATPase (DUF699) (.1) AT3G57940 1429 / 0 Domain of unknown function (DUF1726) ;Putative ATPase (DUF699) (.1), Domain of unknown function (DUF1726) ;Putative ATPase (DUF699) (.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.005G085600 [exp] 1790 / 0 AT1G10490 1429 / 0.0 Domain of unknown function (DUF1726) ;Putative ATPase (DUF699) (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10005792 [exp] 1504 / 0 AT1G10490 1425 / 0.0 Domain of unknown function (DUF1726) ;Putative ATPase (DUF699) (.1) Lus10006807 [exp] 1499 / 0 AT1G10490 1424 / 0.0 Domain of unknown function (DUF1726) ;Putative ATPase (DUF699) (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0023 [poplar] [flax] P-loop_NTPase PF05127 [poplar] [flax] Helicase_RecD Helicase CL0023 [poplar] [flax] P-loop_NTPase PF08351 [poplar] [flax] DUF1726 Domain of unknown function (DUF1726) CL0257 [poplar] [flax] Acetyltrans PF13718 [poplar] [flax] GNAT_acetyltr_2 GNAT acetyltransferase 2 CL0123 [poplar] [flax] HTH PF13725 [poplar] [flax] tRNA_bind_2 Possible tRNA binding domain
Representative CDS sequence Show only first row Show all	>Potri.007G079300.1 pacid=42765922 polypeptide=Potri.007G079300.1.p locus=Potri.007G079300 ID=Potri.007G079300.1.v4.1 annot-version=v4.1 ATGAGGAAGAAGGTGGACGAGAGAATCAGAACACTCATAGAAAATGGCGTCAAATTACGCCACCGTTCTCTCTTCCTTATCATCGGCGACAAGTCACGTG ACCAGATTGTGAACCTTCATTATATGCTAAGCAAGGCAGTGGTGAAATCTAGACCGTCCGTTTTATGGTGCTACAAGGATAAACTTGAACTTAGCAGTCA CAAGAAAAAAAGAGCAAAGCAGGTGAAAAAGTTAATGCAGAGAGGACTGTTGGATCCTGAGAAAGTTGATCCTTTTTCGCTCTTTCTTGAGACCGGAGGT TTGACATACTGTTTGTATAAGGATACTGAAAGAATTCTCGGTAATACTTTTGGAATGTGCATATTACAGGATTTTGAGGCTCTGACTCCAAATTTGTTGG CTAGAACGATAGAAACAGTTGAAGGTGGTGGATTGATTGTGTTGCTGCTACGCTCTTTATCTTCGTTGACCAGTTTGTACACAATGGTTATGGATGTTCA TGAGAGGTTTCGTACCGAGTCCCATTCTGAGGCAACTGGGCGCTTTAATGAACGTTTCTTGTTATCACTTGCTTCGTGCAAAGCATGTGTGGTTATGGAT GACGAGCTTAACATTTTACCTATTTCTTCTCATATAAGGTCAATCACCCCAAATCCTGTTAAAGAGGATTCTGAAGGGCTTTCAGAAGCGGAAAGAAACT TGAAGAATTTGAAAGAACAACTCCATGAGGATTTTCCTGTTGGTCCTTTGGTCAAAAAGTGCTGTACACTAGATCAGGGAAAAGCTGTGATCACATTTCT TGATTCAATTTTGGATAAGACGCCGCGCAGCACGGTTGCTTTGCTGGCTGCTCGAGGTCGTGGGAAATCTGCTGCCCTTGGTTTAGCAGTCGCTGGAGCT ATTGCGGCTGGGTATTCAAATATATTTATTACTGCACCTAGCCCTGAAAACTTAAAGACTTTGTTTGAATTCATCTGCAAGGGATTCGATGCACTTGAAT ACAAGGAACATATTGATTATGATGTGGTGAAAAGTGCAAATCCTGAGTTCAAAAAAGCTACTGTGCGCATTAATATCTTCAAGCAGCACAGACAAACAAT TCAGTATTTACAGCCACATGAACATGAAAAGCTCTCCCAAGTTGAACTGCTTGTTATTGATGAAGCTGCTGCAATTCCATTGCCTGTTGTGAGGTCCCTA CTGGGTCCATATCTGGTTTTCCTTTCATCAACTGTGAATGGCTATGAAGGTACTGGCCGATCCTTGTCACTAAAACTTCTGCAGCAATTGGAAGAACAAA GCCAGATATCTTCTAAGAATGTGGAGGGCTCTCTTTCTGGTCGTCTTTTCAGAAAGATAGAATTAAGCGAGTCTATCAGATATGCTTCTCGTGATCCCAT AGAATCCTGGCTCAATGCCTTACTCTGTCTCGATGTTGCGAATTCAATACCTAGTATCAGCAGATTACCCCTACCCAGTGAATGCGATCTCTATTATGTC AATCGGGACACTCTTTTTTCCTATCACAAAGACAGCGAGTTATTTCTGCAGCGAATGATGGCATTATATGTTGCGTCTCACTACAAAAACTCTCCTAATG ACTTACAACTAATGGCCGATGCTCCAGCACATCATTTGTTCGTGTTGCTTGGCCCTGTTGATGAGTCAAAAAATCAACTTCCTGATATCTTATGCGTCAT CCAGGTCTGTCTTGAAGGCCAGATTTCTCGTAAATCTGCAATCCAAAGCTTAAGTGAAGGTCATCAACCCTCTGGGGACCAAATACCATGGAAATTCTGT GAGCAGTTCCGTGATACAGTTTTCCCTAGCTTTTCAGGTGTTCGTATTGTACGCATTGCCACCCATCCAAGTGCAATGAGGCTTGGATACGGTTCTGCTG CAGTAGAACTCTTAACCAGGTACTTTGAAGGAAAAATAACTCCCATTTCTGAAGTAGATGATGAAAATGATGTGGAGATTCCTCGAGTTAGAGTTACCGA AGCTGCAGAGAAGGTTTCTTTGCTAGAAGAAAATATAAAACCTAGGACAGATCTTCCACATTTGCTAGTACATCTTCATGAACGGAAACCAGAAAAGCTC CATTACCTCGGTGTTTCCTTTGGGTTAACTTTGGACCTTCTTCGCTTTTGGAAGAGACGTAAATTTGCCCCCTTCTACATCGGCCAAATTCCAAATACTG TAACTGGTGAGCATTCATGTATGGTCCTCAAACCATTAAACAGTGATGATAGTGAAGTTAGTGGGTCAGATGAATGGGGCTTTTTTGGTCCATTTTACCA AGATTTCAAGCGAAGGTTTGCTAGGCTACTGGAAGGTGACGGTTTCCGTTCAATGGAATATAAGCTTGCTATGAGTGTCTTGGATCCTAAGATTAATTAC GCTGACATGGAGCAAGAACCCATGCCATCTGCCCCTGATGGATTTTGGAGGTCACTTACTGATGATCTATCACTATATGATTTGGAAAGGTTGAAAGTTT ATACTGAAAACCTAGCTGATTTTCATTTGATTTTAGACATTGTTCCAATCCTGGCTCGTCTATATTTTCGAGGAAAGCTTCCCATATCATTGTCATATGT TCAGGCTTCTGTTTTACTCTGTGTTGGTTTGCAGCAACGAAATATTACCTTTATTGAGGAACAAATGAAGTTGGAAAGAACACAAATTTTGTCACTTTTT ATGAAGGTTATGAAGAAGTTCTACAAATATCTTCATGGTATTGCATCAAAAGATGTAGAATCAACCCTACCCAGGTTAAAAGAGAGGGAGCTGAGACCTC ACAGCATATCGGTGGATGATGATCTAAAGGAAGCAGCAAAGCAAGTTGAGGATGGGATGAAATCCAAGATGGAGGGTTTGCTGAGTCCTGAATTCCTTCA ACAGTACGCAATTGAGGGGGAAAAAGAAGAGTTCGACGATGCTTTGCAAAAACACGGTGGAAAGATAAACCCAGGTAGTGTTATTAGTGTAAAATCCAAT AGAGTTAAACCAGAGAAACATGGAAAGCAAGAGAGTAGTAGGAGTGGGAAAAAGCGAGGTAAGGAAGACCGCGGCTCTAAATCAAATAAAAAGAGTAAAT CTTAA
AA sequence Show only first row Show all	>Potri.007G079300.1 pacid=42765922 polypeptide=Potri.007G079300.1.p locus=Potri.007G079300 ID=Potri.007G079300.1.v4.1 annot-version=v4.1 MRKKVDERIRTLIENGVKLRHRSLFLIIGDKSRDQIVNLHYMLSKAVVKSRPSVLWCYKDKLELSSHKKKRAKQVKKLMQRGLLDPEKVDPFSLFLETGG LTYCLYKDTERILGNTFGMCILQDFEALTPNLLARTIETVEGGGLIVLLLRSLSSLTSLYTMVMDVHERFRTESHSEATGRFNERFLLSLASCKACVVMD DELNILPISSHIRSITPNPVKEDSEGLSEAERNLKNLKEQLHEDFPVGPLVKKCCTLDQGKAVITFLDSILDKTPRSTVALLAARGRGKSAALGLAVAGA IAAGYSNIFITAPSPENLKTLFEFICKGFDALEYKEHIDYDVVKSANPEFKKATVRINIFKQHRQTIQYLQPHEHEKLSQVELLVIDEAAAIPLPVVRSL LGPYLVFLSSTVNGYEGTGRSLSLKLLQQLEEQSQISSKNVEGSLSGRLFRKIELSESIRYASRDPIESWLNALLCLDVANSIPSISRLPLPSECDLYYV NRDTLFSYHKDSELFLQRMMALYVASHYKNSPNDLQLMADAPAHHLFVLLGPVDESKNQLPDILCVIQVCLEGQISRKSAIQSLSEGHQPSGDQIPWKFC EQFRDTVFPSFSGVRIVRIATHPSAMRLGYGSAAVELLTRYFEGKITPISEVDDENDVEIPRVRVTEAAEKVSLLEENIKPRTDLPHLLVHLHERKPEKL HYLGVSFGLTLDLLRFWKRRKFAPFYIGQIPNTVTGEHSCMVLKPLNSDDSEVSGSDEWGFFGPFYQDFKRRFARLLEGDGFRSMEYKLAMSVLDPKINY ADMEQEPMPSAPDGFWRSLTDDLSLYDLERLKVYTENLADFHLILDIVPILARLYFRGKLPISLSYVQASVLLCVGLQQRNITFIEEQMKLERTQILSLF MKVMKKFYKYLHGIASKDVESTLPRLKERELRPHSISVDDDLKEAAKQVEDGMKSKMEGLLSPEFLQQYAIEGEKEEFDDALQKHGGKINPGSVISVKSN RVKPEKHGKQESSRSGKKRGKEDRGSKSNKKSKS

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G10490			Domain of unknown function (DU...		Potri.007G079300 [exp]	0	1
AT1G30240			unknown protein		Potri.010G238000 [exp]	1.41	0.8913
AT3G11964			RNA binding;RNA binding (.1)		Potri.016G062600 [exp]	2.00	0.9008
AT2G34357			ARM repeat superfamily protein...		Potri.006G137900 [exp]	2.00	0.8826
AT1G63810			unknown protein		Potri.007G024600 [exp]	2.23	0.8782
AT4G02400			U3 ribonucleoprotein (Utp) fam...		Potri.002G203700 [exp]	2.64	0.8613
AT3G06530			ARM repeat superfamily protein...		Potri.003G151500 [exp]	3.00	0.8885
AT1G42440			unknown protein		Potri.005G250100 [exp]	3.46	0.8415
AT3G09720			P-loop containing nucleoside t...		Potri.019G065300 [exp]	5.74	0.8454
AT3G16810		APUM24	pumilio 24 (.1)		Potri.010G005600 [exp]	8.00	0.8549
AT4G27010		EMB2788	EMBRYO DEFECTIVE 2788, unknown...		Potri.001G423600 [exp]	8.36	0.8455

Compare expression of checked genes

Potri.007G079300 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.