Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G02420 648 / 0 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT3G61360 212 / 4e-62 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT1G77360 204 / 9e-59 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT5G11310 198 / 4e-56 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT1G71060 196 / 4e-56 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT5G15010 196 / 2e-55 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT1G20300 180 / 7e-50 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT1G74900 176 / 3e-49 OTP43 organelle transcript processing defect 43, Pentatricopeptide repeat (PPR) superfamily protein (.1) AT3G49730 179 / 6e-49 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT3G62470 169 / 2e-45 Pentatricopeptide repeat (PPR) superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G130400 [exp] 223 / 4e-66 AT3G61360 540 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.005G181900 [exp] 214 / 5e-63 AT1G77360 723 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.010G114700 [exp] 197 / 3e-56 AT1G71060 679 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.015G070200 [exp] 193 / 4e-55 AT1G74900 590 / 0.0 organelle transcript processing defect 43, Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.014G121400 [exp] 196 / 1e-54 AT3G62470 737 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.005G245400 [exp] 190 / 1e-53 AT1G20300 768 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.013G053600 [exp] 189 / 1e-52 AT5G15010 659 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.010G098600 [exp] 185 / 2e-51 AT1G73400 670 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.004G102700 [exp] 172 / 3e-47 AT1G52640 697 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10042362 [exp] 739 / 0 AT1G02420 613 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10026306 [exp] 619 / 0 AT1G02420 522 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10001784 [exp] 219 / 1e-64 AT3G61360 490 / 2e-170 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10001588 [exp] 202 / 4e-57 AT1G77360 679 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10021991 [exp] 199 / 5e-56 AT5G15010 617 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10042307 [exp] 191 / 6e-54 AT1G74900 549 / 0.0 organelle transcript processing defect 43, Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10034419 [exp] 191 / 2e-53 AT1G73400 684 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10001633 [exp] 189 / 5e-53 AT1G71060 602 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10019141 [exp] 188 / 1e-52 AT1G73400 672 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10008102 [exp] 188 / 3e-52 AT5G11310 620 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0020 [poplar] [flax] TPR PF01535 [poplar] [flax] PPR PPR repeat CL0020 [poplar] [flax] TPR PF13041 [poplar] [flax] PPR_2 PPR repeat family
Representative CDS sequence Show only first row Show all	>Potri.007G079400.1 pacid=42766654 polypeptide=Potri.007G079400.1.p locus=Potri.007G079400 ID=Potri.007G079400.1.v4.1 annot-version=v4.1 ATGCTGTCGTTTAATAAAAACTTCCCATCAGTCAAGTTCTATTTTTCACCACCGTCATCAGCCTCTGCCTCTGCCGCCAAAGCTTCTGTTTTCGCTTTGG TAAAATCAGAAAAGAAGACAACGGGGATGATGATGATGATGATGATTAAGAAGAATCTAAAGTCTCTATCTTTTGAACTACAAAAATCAAGGTATGTTTC TTCTTCTAAAATCCCATTCCTTTCTCTCCACACCAACCCTCAAAACCACAACAACAAAGACATACAAGTAGATGCCATTTATAACATCATAAGTAACTCA ACTTCCTCTCAAAACCTCAAACAATCCTTAAAATCAACTGGGGTTTTTCTCTCGAATGATTTGATAGATAAAGTGCTCAAAAGGGTCAGGTTTAGCCATG GAAACCCTTTACAAGCACTTGACTTCTTTAATTTCACTGCTGATAGAAGAGGGTTTTATCACTCTTCTTATTCTTTAGATACCATGCTTTACATTTTGGG TAGGAGTCGCAAATTTGATCATATTTGGGATGTTTTGATTGATATCAAGAGGAAAGACCGGAACTTGATAACTCCGAGGACTTTACAAGTTGTTTTAGGT AGAGTTGCTAAGGTTTGTTCTGTCAGAATGACCGTGGAGTCTTTTTGGAAGTTCAAGAGATTGGTTCCGGTGTTTGATACTAGTTGTTTTAATGCTCTGT TGAGGACTTTGTGTCAAGAGAAGAGTATGAGCGATGCGAGAAATGTTTATCATCATTTGAAGAAGGGTTTTAGGCCCAATTTGCAAACTTTTAACATACT TTTGTCGGGGTGGAAGTCGTCAGAGGAAGCGGAGTTGTTTTATGAGGAGATGAAGGAATTGGGTGTCAAGCCTGATATTGTAACGTACAACTCGTTAATT GATGTGTTTTGTAAGGGTAGAGAACTGGAGAAGGCATATGGGGTGGTTGCGAGGATGAGGGAGGAGGATATATTGCCGGATGTGATAACATATACTAGTA TTATTGGTGGGTTGGGTTTGGTTGGCCAGCCTGATAAAGCAAGAGATATGCTGAAGGAGATGAAGGAGCATGGATGTTACCCAGATGTTGCAGCATACAA TGCTGTGATTAGGAATTATTGTATTGCAAAGAGGCTAGATGCTGCTTACAGTTTGATGGCTGAGATGGAGAGTAAGGGCATGAGTCCAAATGCAACTAGT TACAATTTGTTCTTTCGAGTTTTTTCTTGGTCAAATGACTTGCGCAACTCTTGGGATTTCTACGGGAGGATGATGGATGCTGGGTGCCTGCCGAATACCC AGTCTTGTATGTTTCTCATCAAGTTGTTTAAGAGGCATGAAAAGGTGGAGATGGCACTTCAACTTTGGAATGATATGGTAGAGAAAGGTTTTGGGTCATA TATTTTGGTATCTGATGTGTTGCTTGGCATGCTTTGTGATATGGGCAAGTTGGTTGAAGCAGAGAAGTGTTTTTTGCAAATGGTGGAGAAAGGGCATAAG CCAAGCAATGTTTCTTTCAGAAGGATTAAGGTGCTCATGGAATTGGCAAACAAGCACGATGCCATTCGGAATTTGTCAGAGAAGATGGCTATTTTTGGGT CATCAATTCGAGCTCCTGAAGGCATGGATGAGAAAGAATGTTCAGACCCAGTTCCTAGTTTATAA
AA sequence Show only first row Show all	>Potri.007G079400.1 pacid=42766654 polypeptide=Potri.007G079400.1.p locus=Potri.007G079400 ID=Potri.007G079400.1.v4.1 annot-version=v4.1 MLSFNKNFPSVKFYFSPPSSASASAAKASVFALVKSEKKTTGMMMMMMIKKNLKSLSFELQKSRYVSSSKIPFLSLHTNPQNHNNKDIQVDAIYNIISNS TSSQNLKQSLKSTGVFLSNDLIDKVLKRVRFSHGNPLQALDFFNFTADRRGFYHSSYSLDTMLYILGRSRKFDHIWDVLIDIKRKDRNLITPRTLQVVLG RVAKVCSVRMTVESFWKFKRLVPVFDTSCFNALLRTLCQEKSMSDARNVYHHLKKGFRPNLQTFNILLSGWKSSEEAELFYEEMKELGVKPDIVTYNSLI DVFCKGRELEKAYGVVARMREEDILPDVITYTSIIGGLGLVGQPDKARDMLKEMKEHGCYPDVAAYNAVIRNYCIAKRLDAAYSLMAEMESKGMSPNATS YNLFFRVFSWSNDLRNSWDFYGRMMDAGCLPNTQSCMFLIKLFKRHEKVEMALQLWNDMVEKGFGSYILVSDVLLGMLCDMGKLVEAEKCFLQMVEKGHK PSNVSFRRIKVLMELANKHDAIRNLSEKMAIFGSSIRAPEGMDEKECSDPVPSL

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G02420			Pentatricopeptide repeat (PPR)...		Potri.007G079400 [exp]	0	1
AT3G08020			PHD finger family protein (.1)		Potri.001G264800 [exp]	2.82	0.8648
AT3G21320			unknown protein		Potri.003G045000 [exp]	3.00	0.8856
AT3G06250	FAR1_related	FRS7	FAR1-related sequence 7 (.1)		Potri.010G029000 [exp]	6.92	0.8486
AT3G21790			UDP-Glycosyltransferase superf...		Potri.006G007300 [exp]	7.48	0.8082
					Potri.001G318600 [exp]	7.74	0.8203
AT4G10710		SPT16	global transcription factor C ...		Potri.013G004500 [exp]	8.30	0.8648	GTC903
AT1G09730			Cysteine proteinases superfami...		Potri.017G044000 [exp]	10.95	0.8526
AT3G54350	FHA	EMB1967	embryo defective 1967, Forkhea...		Potri.005G234300 [exp]	11.66	0.8412
AT5G01260			Carbohydrate-binding-like fold...		Potri.009G044800 [exp]	11.83	0.8435
AT2G46040	ARID		ARID/BRIGHT DNA-binding domain...		Potri.002G161100 [exp]	12.40	0.8145

Compare expression of checked genes

Potri.007G079400 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.