Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G10500 209 / 7e-70 ATCPISCA chloroplast-localized ISCA-like protein (.1) AT2G16710 77 / 2e-18 Iron-sulphur cluster biosynthesis family protein (.1.2.3) AT5G03905 74 / 5e-17 Iron-sulphur cluster biosynthesis family protein (.1) AT2G36260 71 / 4e-16 Iron-sulphur cluster biosynthesis family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.005G085400 [exp] 229 / 1e-77 AT1G10500 227 / 9e-77 chloroplast-localized ISCA-like protein (.1) Potri.010G238800 [exp] 76 / 6e-18 AT2G16710 211 / 2e-71 Iron-sulphur cluster biosynthesis family protein (.1.2.3) Potri.008G020400 [exp] 74 / 5e-17 AT2G16710 197 / 5e-66 Iron-sulphur cluster biosynthesis family protein (.1.2.3) Potri.006G084300 [exp] 74 / 8e-17 AT5G03905 199 / 2e-66 Iron-sulphur cluster biosynthesis family protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10012683 [exp] 208 / 2e-69 AT1G10500 218 / 2e-73 chloroplast-localized ISCA-like protein (.1) Lus10020827 [exp] 207 / 6e-69 AT1G10500 216 / 1e-72 chloroplast-localized ISCA-like protein (.1) Lus10022714 [exp] 72 / 3e-16 AT5G03905 201 / 3e-67 Iron-sulphur cluster biosynthesis family protein (.1) Lus10014201 [exp] 70 / 3e-15 AT5G03905 204 / 2e-68 Iron-sulphur cluster biosynthesis family protein (.1) Lus10017048 [exp] 66 / 7e-14 AT2G16710 220 / 5e-75 Iron-sulphur cluster biosynthesis family protein (.1.2.3) Lus10021368 [exp] 59 / 1e-10 AT2G16710 211 / 3e-69 Iron-sulphur cluster biosynthesis family protein (.1.2.3)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF01521 [poplar] [flax] Fe-S_biosyn Iron-sulphur cluster biosynthesis
Representative CDS sequence Show only first row Show all	>Potri.007G079600.2 pacid=42765185 polypeptide=Potri.007G079600.2.p locus=Potri.007G079600 ID=Potri.007G079600.2.v4.1 annot-version=v4.1 ATGGCGTTATTCTCTTCAACAACAGCACCACCGTACTCTCCTCCTCTTCTCCGATTACCAGATTACACTAATAAAAAAACTCTCTCTTTCTCTTCTCCTC CAAATTCTCTCTCTTTCCGATTCTCCACATCGAATCTCAGCCGTCGAAACCCTTCTCTTTCTCTTCGATCAACTTCATCCCTAGCTTCGCCGCCGTTGGA GGGGGTGGCGCCGGCTATATCGGTGACGGAGAATGCGTTGAAGCATTTGAATAGGATAAAAAATGAGAGAAATGAAGATCTGTGCTTAAGAATTGGGGTT AAACAAGGTGGATGCTCTGGTATGTCTTACACTATGGATTTTGAGAATCGAGCCAATGCTAGACCCGATGATTCCATCATTGAATGTAACGGATTTGTAA TTGTTTGTGATCCGAAGAGCCTCCTCTTCATATTTGGGATGCAATTGGATTACAGTGATGCTCTTATCGGTGGAGGTTTCTCTTTCAAGAACCCAAATGC TACAAAGACATGTGGCTGTGGTAAATCCTTTGCAGCATAG
AA sequence Show only first row Show all	>Potri.007G079600.2 pacid=42765185 polypeptide=Potri.007G079600.2.p locus=Potri.007G079600 ID=Potri.007G079600.2.v4.1 annot-version=v4.1 MALFSSTTAPPYSPPLLRLPDYTNKKTLSFSSPPNSLSFRFSTSNLSRRNPSLSLRSTSSLASPPLEGVAPAISVTENALKHLNRIKNERNEDLCLRIGV KQGGCSGMSYTMDFENRANARPDDSIIECNGFVIVCDPKSLLFIFGMQLDYSDALIGGGFSFKNPNATKTCGCGKSFAA

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G10500		ATCPISCA	chloroplast-localized ISCA-lik...		Potri.007G079600 [exp]	0	1
AT4G22260		IM1, IM	IMMUTANS, Alternative oxidase ...		Potri.011G021800 [exp]	1.41	0.9748
AT5G27280			Zim17-type zinc finger protein...		Potri.005G246200 [exp]	1.41	0.9737
AT4G37000		ATRCCR, ACD2	ARABIDOPSIS THALIANA RED CHLOR...		Potri.007G043600 [exp]	2.00	0.9697
AT5G16370		AAE5	acyl activating enzyme 5 (.1)		Potri.019G067800 [exp]	2.64	0.9639
AT3G13540	MYB	ATMYB5, ATM2	myb domain protein 5 (.1)		Potri.013G056500 [exp]	3.46	0.9665
AT5G42800		M318, TT3, DFR	dihydroflavonol 4-reductase (....		Potri.001G093300 [exp]	3.87	0.9673
AT1G48450			Protein of unknown function (D...		Potri.015G031200 [exp]	4.24	0.9597
AT1G64940		CYP89A6	"cytochrome P450, family 87, s...		Potri.005G079600 [exp]	5.83	0.9506	Pt-ACT11.10
AT1G79510			Uncharacterized conserved prot...		Potri.010G173000 [exp]	6.00	0.9562
AT1G27385			unknown protein		Potri.001G056500 [exp]	6.24	0.9709

Compare expression of checked genes

Potri.007G079600 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.