Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G64810 140 / 3e-42 WRKY ATWRKY51, WRKY51 ARABIDOPSIS THALIANA WRKY DNA-BINDING PROTEIN 51, WRKY DNA-binding protein 51 (.1) AT5G26170 122 / 2e-35 WRKY ATWRKY50, WRKY50 ARABIDOPSIS THALIANA WRKY DNA-BINDING PROTEIN 50, WRKY DNA-binding protein 50 (.1) AT2G21900 104 / 4e-28 WRKY ATWRKY59, WRKY59 WRKY DNA-binding protein 59 (.1) AT2G47260 106 / 1e-27 WRKY ATWRKY23, WRKY23 WRKY DNA-binding protein 23 (.1) AT4G18170 104 / 5e-27 WRKY ATWRKY28, WRKY28 WRKY DNA-binding protein 28 (.1) AT1G29860 103 / 5e-27 WRKY ATWRKY71, WRKY71 WRKY DNA-binding protein 71 (.1) AT1G64000 101 / 7e-27 WRKY ATWRKY56, WRKY56 WRKY DNA-binding protein 56 (.1) AT2G44745 101 / 9e-27 WRKY WRKY12 WRKY family transcription factor (.1) AT2G46130 98 / 1e-26 WRKY ATWRKY43, WRKY43 WRKY DNA-binding protein 43 (.1.2) AT5G13080 98 / 3e-26 WRKY ATWRKY75, WRKY75 ARABIDOPSIS THALIANA WRKY DNA-BINDING PROTEIN 75, WRKY DNA-binding protein 75 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.005G085200 [exp] 263 / 3e-90 AT5G64810 145 / 4e-44 ARABIDOPSIS THALIANA WRKY DNA-BINDING PROTEIN 51, WRKY DNA-binding protein 51 (.1) Potri.006G224100 [exp] 127 / 2e-37 AT5G26170 139 / 2e-42 ARABIDOPSIS THALIANA WRKY DNA-BINDING PROTEIN 50, WRKY DNA-binding protein 50 (.1) Potri.010G147700 [exp] 111 / 2e-29 AT5G49520 182 / 8e-54 ARABIDOPSIS THALIANA WRKY DNA-BINDING PROTEIN 48, WRKY DNA-binding protein 48 (.1) Potri.002G193000 [exp] 107 / 3e-28 AT2G47260 185 / 3e-56 WRKY DNA-binding protein 23 (.1) Potri.014G050000 [exp] 105 / 3e-28 AT2G44745 224 / 5e-74 WRKY family transcription factor (.1) Potri.008G103300 [exp] 108 / 5e-28 AT5G49520 170 / 3e-49 ARABIDOPSIS THALIANA WRKY DNA-BINDING PROTEIN 48, WRKY DNA-binding protein 48 (.1) Potri.014G118200 [exp] 107 / 5e-28 AT2G47260 190 / 5e-58 WRKY DNA-binding protein 23 (.1) Potri.002G138900 [exp] 103 / 8e-28 AT2G44745 224 / 9e-75 WRKY family transcription factor (.1) Potri.015G099200 [exp] 102 / 2e-27 AT5G13080 154 / 2e-48 ARABIDOPSIS THALIANA WRKY DNA-BINDING PROTEIN 75, WRKY DNA-binding protein 75 (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10036624 [exp] 134 / 1e-39 AT5G26170 125 / 2e-36 ARABIDOPSIS THALIANA WRKY DNA-BINDING PROTEIN 50, WRKY DNA-binding protein 50 (.1) Lus10035841 [exp] 127 / 1e-36 AT5G64810 131 / 4e-38 ARABIDOPSIS THALIANA WRKY DNA-BINDING PROTEIN 51, WRKY DNA-binding protein 51 (.1) Lus10006848 [exp] 115 / 1e-31 AT5G26170 133 / 7e-39 ARABIDOPSIS THALIANA WRKY DNA-BINDING PROTEIN 50, WRKY DNA-binding protein 50 (.1) Lus10037785 [exp] 107 / 6e-28 AT5G49520 179 / 4e-53 ARABIDOPSIS THALIANA WRKY DNA-BINDING PROTEIN 48, WRKY DNA-binding protein 48 (.1) Lus10017067 [exp] 106 / 2e-27 AT5G49520 184 / 2e-54 ARABIDOPSIS THALIANA WRKY DNA-BINDING PROTEIN 48, WRKY DNA-binding protein 48 (.1) Lus10000173 [exp] 105 / 2e-27 AT2G03340 366 / 2e-124 WRKY DNA-binding protein 3 (.1) Lus10036800 [exp] 107 / 3e-27 AT2G03340 405 / 4e-138 WRKY DNA-binding protein 3 (.1) Lus10015377 [exp] 107 / 5e-27 AT2G03340 417 / 3e-141 WRKY DNA-binding protein 3 (.1) Lus10007906 [exp] 102 / 5e-27 AT1G64000 168 / 6e-54 WRKY DNA-binding protein 56 (.1) Lus10026409 [exp] 101 / 8e-27 AT2G38470 194 / 3e-59 WRKY DNA-binding protein 33 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0274 [poplar] [flax] WRKY-GCM1 PF03106 [poplar] [flax] WRKY WRKY DNA -binding domain
Representative CDS sequence Show only first row Show all	>Potri.007G079800.1 pacid=42766838 polypeptide=Potri.007G079800.1.p locus=Potri.007G079800 ID=Potri.007G079800.1.v4.1 annot-version=v4.1 ATGGAGTACTATCCTCAGAACCCTAAACCTAGCTATAATTATTCTTATATCAATGAAGGTTTAGATCCGTGGGCGATTGAGTTTCAGCCGTCGGATTATC TCATGCTTGATGATGGATTTGGTGAAGATGATTCATCCTCGCAAAATATGGTATCACCGGAGCAAGTTGCCAGTGGTTCATCAACCGGATACAGTGGTGC AACATCAAGAAATAATAGCATAAAATGCAAGAATGGAGTGAAGAAGAACAAGACAGAAGTGGAGCATAGAGTTGCATTTAGAACAAAATCTGAGCTGGAG ATCATGGATGATGGATTTAAATGGAGGAAGTATGGAAAGAAGTCAGTCAAGAACAGCCCAAATCCAAGGAATTACTACAAATGCTCAAGTGGTGGATGCA ATGTAAAGAAGAGAGTAGAAAGAGATAGAGAAGACTCAAGATATGTGTTAACTTCATATGATGGAGTGCACAACCATGAAAGCCCTTGCATGGTCTATTA CAATAACCAGATGCCTCTCATGGCTTCTAATGCTTGGACCTTGCAACCTTCTTCTCTCCACTCTTCTTCCTTTTCCTAG
AA sequence Show only first row Show all	>Potri.007G079800.1 pacid=42766838 polypeptide=Potri.007G079800.1.p locus=Potri.007G079800 ID=Potri.007G079800.1.v4.1 annot-version=v4.1 MEYYPQNPKPSYNYSYINEGLDPWAIEFQPSDYLMLDDGFGEDDSSSQNMVSPEQVASGSSTGYSGATSRNNSIKCKNGVKKNKTEVEHRVAFRTKSELE IMDDGFKWRKYGKKSVKNSPNPRNYYKCSSGGCNVKKRVERDREDSRYVLTSYDGVHNHESPCMVYYNNQMPLMASNAWTLQPSSLHSSSFS

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G64810	WRKY	ATWRKY51, WRKY5...	ARABIDOPSIS THALIANA WRKY DNA-...		Potri.007G079800 [exp]	0	1
					Potri.010G125900 [exp]	1.41	0.9275
AT3G56710		SIB1	sigma factor binding protein 1...		Potri.019G013750 [exp]	2.00	0.8698
AT3G56400	WRKY	ATWRKY70, WRKY7...	ARABIDOPSIS THALIANA WRKY DNA-...		Potri.013G090300 [exp]	3.16	0.8401	Pt-WRKY54.1
AT5G24910		ELA1, CYP714A1	EUI-like p450 A1, cytochrome P...		Potri.013G160800 [exp]	4.69	0.8201
AT5G50915	bHLH	bHLH137	basic helix-loop-helix (bHLH) ...		Potri.001G062900 [exp]	7.07	0.8204
AT2G18193			P-loop containing nucleoside t...		Potri.007G020500 [exp]	7.34	0.8382
AT3G51480		ATGLR3.6	glutamate receptor 3.6 (.1)		Potri.005G102600 [exp]	9.38	0.7814
AT1G80840	WRKY	ATWRKY40, WRKY4...	WRKY DNA-binding protein 40 (....		Potri.018G019700 [exp]	12.00	0.8433
AT5G25930			Protein kinase family protein ...		Potri.006G235800 [exp]	21.16	0.8378
					Potri.012G121504 [exp]	21.93	0.8112

Compare expression of checked genes

Potri.007G079800 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.