Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G64813 439 / 3e-155 LIP1 Light Insensitive Period1, Ras-related small GTP-binding family protein (.1) AT5G09910 378 / 2e-131 Ras-related small GTP-binding family protein (.1) AT1G49300 55 / 9e-09 ATRAB7, ATRABG3E ARABIDOPSIS RAB GTPASE HOMOLOG G3E, ARABIDOPSIS RAB GTPASE HOMOLOG 7, RAB GTPase homolog G3E (.1.2) AT1G43890 54 / 4e-08 ATRAB-C1, RAB18-1, ATRAB18, AtRABC1 RAB GTPASE HOMOLOG 18-1, ARABIDOPSIS RAB GTPASE HOMOLOG B18, ARABIDOPSIS RAB GTPASE HOMOLOG C1, RAB GTPASE HOMOLOG B18 (.1.2.3) AT4G39990 52 / 1e-07 ATGB3, AtRABA4b, AtRab11G ARABIDOPSIS THALIANA RAB GTPASE HOMOLOG A 4B, GTP-BINDING PROTEIN 3, RAB GTPase homolog A4B (.1) AT1G52280 52 / 1e-07 AtRABG3d RAB GTPase homolog G3D (.1) AT3G18820 51 / 2e-07 RAB71, AtRABG3f, AtRab7B RAB GTPase homolog G3F (.1) AT3G16100 51 / 3e-07 AtRABG3c, AtRab7D RAB GTPase homolog G3C (.1) AT4G09720 50 / 4e-07 AtRABG3a RAB GTPase homolog G3A (.1.2.3.4) AT5G03530 49 / 8e-07 ATRABALPHA, AtRABC2a, AtRab18B ,ATRAB ALPHA ARABIDOPSIS THALIANA RAB GTPASE HOMOLOG C2A, RAB GTPase homolog C2A (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.005G085100 [exp] 486 / 8e-174 AT5G64813 476 / 4e-170 Light Insensitive Period1, Ras-related small GTP-binding family protein (.1) Potri.009G115000 [exp] 55 / 1e-08 AT3G18820 408 / 2e-147 RAB GTPase homolog G3F (.1) Potri.001G182900 [exp] 54 / 2e-08 AT3G16100 394 / 7e-142 RAB GTPase homolog G3C (.1) Potri.004G153400 [exp] 53 / 4e-08 AT3G18820 405 / 2e-146 RAB GTPase homolog G3F (.1) Potri.002G074400 [exp] 52 / 8e-08 AT1G43890 363 / 2e-129 RAB GTPASE HOMOLOG 18-1, ARABIDOPSIS RAB GTPASE HOMOLOG B18, ARABIDOPSIS RAB GTPASE HOMOLOG C1, RAB GTPASE HOMOLOG B18 (.1.2.3) Potri.003G053400 [exp] 52 / 1e-07 AT1G52280 395 / 2e-142 RAB GTPase homolog G3D (.1) Potri.005G085300 [exp] 51 / 3e-07 AT4G09720 291 / 3e-101 RAB GTPase homolog G3A (.1.2.3.4) Potri.012G117800 [exp] 50 / 3e-07 AT5G45130 357 / 1e-127 ARABIDOPSIS RAB HOMOLOG F2A, RAB homolog 1 (.1) Potri.015G113000 [exp] 50 / 3e-07 AT5G45130 339 / 2e-120 ARABIDOPSIS RAB HOMOLOG F2A, RAB homolog 1 (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10005795 [exp] 430 / 6e-149 AT5G64813 501 / 9e-177 Light Insensitive Period1, Ras-related small GTP-binding family protein (.1) Lus10006805 [exp] 418 / 7e-145 AT5G64813 500 / 4e-177 Light Insensitive Period1, Ras-related small GTP-binding family protein (.1) Lus10040468 [exp] 55 / 1e-08 AT3G18820 403 / 2e-145 RAB GTPase homolog G3F (.1) Lus10029745 [exp] 55 / 5e-08 AT1G43900 422 / 2e-144 Protein phosphatase 2C family protein (.1) Lus10042775 [exp] 54 / 1e-07 AT1G43900 434 / 4e-150 Protein phosphatase 2C family protein (.1) Lus10022608 [exp] 50 / 7e-07 AT5G03530 347 / 4e-123 ARABIDOPSIS THALIANA RAB GTPASE HOMOLOG C2A, RAB GTPase homolog C2A (.1) Lus10035872 [exp] 50 / 7e-07 AT1G52280 397 / 4e-143 RAB GTPase homolog G3D (.1) Lus10021507 [exp] 49 / 1e-06 AT5G03530 352 / 5e-125 ARABIDOPSIS THALIANA RAB GTPASE HOMOLOG C2A, RAB GTPase homolog C2A (.1) Lus10018013 [exp] 49 / 3e-06 AT1G18200 275 / 9e-94 RAB GTPase homolog A6B (.1) Lus10042009 [exp] 48 / 4e-06 AT1G18200 276 / 1e-94 RAB GTPase homolog A6B (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0023 [poplar] [flax] P-loop_NTPase PF00071 [poplar] [flax] Ras Ras family
Representative CDS sequence Show only first row Show all	>Potri.007G080100.3 pacid=42766761 polypeptide=Potri.007G080100.3.p locus=Potri.007G080100 ID=Potri.007G080100.3.v4.1 annot-version=v4.1 ATGATTTGTGGGTTGCTTGTAAGAAGTGGAAGTCATTTTCTCCTCTATGATCCTTACTATATTCCTCCTCTTTGGAAGCTGAGATCAAATCCATTTTTTA TTTTTATCTTTGTAGGTGTGGGTAAAACCTCACTTGTTCATCTTATTGTCAAAGGTTCTTCCTCCGCTCGCCCTCCTCAAACAATTGGATGTACAGTTGG TGTGAAGCACATTTCTTATGGTAATTCCAGTAGCTCATCAAGCAGTATTAAAGGTGATTCTGAGAGAGATTTCTTCGTTGAACTCTGGGATGTGTCAGGT CATGACCGATACAAAGATTGCCGGTCTCTATTCTATTCTCAAATTAATGGGGTTATTTTTGTTCATGATCTCTCCCAGAGAAGGACCAAAACAAGCTTGC AGAAATGGGCATCTGAGATTGCTGCAACTGGAACATTTTCAGCTCCTCTAAGTTCTGGAGGTCCTGGTGGCCTTCCTGTCCCTTATATTGTTATCGGTAA CAAATCTGATGTTGCTGCCAAAGAGGGTACAAGGGGAAGCAGTGGCAACCTTGTTGATGCAGCACGACAGTGGGTTGAGAAGCAGGGTCTGCTTCCTTCC AGTGAGGAAATTCCATTGACAGAAAGTTTTCCTGGAAGCGGAGGTCTTATTGCAGCTGCCAAAGAAGCAAGGTATGACAAAGAAGCTGTGGTAAAGTTTT TTCGAACATTGATCAGGAGAAGATATTTTTCAGACGAACTACCTGCACCAAGTCCATGGTCTGCTTATCCAGTTCAGAGATCTGTCCAACGTTTAGATGA AAATACAAGTGACGAGGATCCATTTTACAAGACTACAAGCTTAGCAGGCGATCCTTACAAATACAATACGCTCCCTCCCCTGCCAGCTCAACGAAATCTT ACACCACCTCCAACACTTTACCCACAGCAGCCGGTTTCGGTTACAGAGAGTTACAGCATTCCAAGATTTACCCTGACTGGCTCTCAAGAAATAAGCAACA CTGCAAGATTGAAGCGAATGGATATTAATGTTTGA
AA sequence Show only first row Show all	>Potri.007G080100.3 pacid=42766761 polypeptide=Potri.007G080100.3.p locus=Potri.007G080100 ID=Potri.007G080100.3.v4.1 annot-version=v4.1 MICGLLVRSGSHFLLYDPYYIPPLWKLRSNPFFIFIFVGVGKTSLVHLIVKGSSSARPPQTIGCTVGVKHISYGNSSSSSSSIKGDSERDFFVELWDVSG HDRYKDCRSLFYSQINGVIFVHDLSQRRTKTSLQKWASEIAATGTFSAPLSSGGPGGLPVPYIVIGNKSDVAAKEGTRGSSGNLVDAARQWVEKQGLLPS SEEIPLTESFPGSGGLIAAAKEARYDKEAVVKFFRTLIRRRYFSDELPAPSPWSAYPVQRSVQRLDENTSDEDPFYKTTSLAGDPYKYNTLPPLPAQRNL TPPPTLYPQQPVSVTESYSIPRFTLTGSQEISNTARLKRMDINV

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G64813		LIP1	Light Insensitive Period1, Ras...		Potri.007G080100 [exp]	0	1
AT1G02130		ARA5, AtRABD2a,...	ARABIDOPSIS THALIANA RAB D2A, ...		Potri.001G152800 [exp]	6.70	0.6756	Pt-RAB1.5
AT1G14000		VIK	VH1-interacting kinase (.1)		Potri.008G090800 [exp]	13.00	0.5663
AT1G74320			Protein kinase superfamily pro...		Potri.003G193000 [exp]	14.28	0.6097
AT1G13560		AAPT1, ATAAPT1	aminoalcoholphosphotransferase...		Potri.010G133800 [exp]	21.21	0.5883	Pt-AAPT1.1
AT1G02130		ARA5, AtRABD2a,...	ARABIDOPSIS THALIANA RAB D2A, ...		Potri.003G081800 [exp]	21.81	0.6014	RAB1.6
					Potri.009G086900 [exp]	22.18	0.6052
AT5G47420			Tryptophan RNA-binding attenua...		Potri.001G155900 [exp]	30.39	0.5858
AT3G02740			Eukaryotic aspartyl protease f...		Potri.019G054900 [exp]	36.26	0.5933
AT1G78950		ATLUP3	Terpenoid cyclases family prot...		Potri.007G002500 [exp]	41.56	0.5313
AT1G03905		ABCI19	ATP-binding cassette I19, P-lo...		Potri.002G036300 [exp]	51.57	0.5635	POP.2

Compare expression of checked genes

Potri.007G080100 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.