Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G09920 269 / 1e-94 NRPB4, ATRPB15.9, RPB15.9.9, RPB15.9 RNA polymerase II, Rpb4, core protein (.1) AT4G15950 84 / 9e-21 RDM2, NRPE4, NRPD4 RNA-DIRECTED DNA METHYLATION 2, RNA polymerase II, Rpb4, core protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.005G084900 [exp] 283 / 3e-100 AT5G09920 269 / 1e-94 RNA polymerase II, Rpb4, core protein (.1) Potri.016G003200 [exp] 89 / 5e-23 AT4G15950 150 / 4e-46 RNA-DIRECTED DNA METHYLATION 2, RNA polymerase II, Rpb4, core protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10005796 [exp] 249 / 2e-86 AT5G09920 243 / 6e-84 RNA polymerase II, Rpb4, core protein (.1) Lus10006805 [exp] 247 / 3e-81 AT5G64813 500 / 4e-177 Light Insensitive Period1, Ras-related small GTP-binding family protein (.1) Lus10038766 [exp] 91 / 3e-23 AT4G15950 140 / 2e-41 RNA-DIRECTED DNA METHYLATION 2, RNA polymerase II, Rpb4, core protein (.1) Lus10039097 [exp] 81 / 1e-19 AT4G15950 124 / 7e-36 RNA-DIRECTED DNA METHYLATION 2, RNA polymerase II, Rpb4, core protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0426 [poplar] [flax] HRDC-like PF03874 [poplar] [flax] RNA_pol_Rpb4 RNA polymerase Rpb4
Representative CDS sequence Show only first row Show all	>Potri.007G080400.4 pacid=42766643 polypeptide=Potri.007G080400.4.p locus=Potri.007G080400 ID=Potri.007G080400.4.v4.1 annot-version=v4.1 ATGTCTGGAGAAGAGGAAGAGAATGCGGCCGAGCTCAAAATCGGAGATGATTTTTTGAAGGCCAAGTGCTTAATGAATTGTGAGGTTGCTTTAATTCTTG AGCATAAGTATGAGCAGCTTCAACAGATGTCTGATGATCCTATGAATCAAGTATCCCAAGTATTTGAGAAATCACTGCAGTATGTGAAGCGCTTTAGCCG CTACAAAAATCCCGATGCTGTGAGACAAGTTCGAGAAATTCTTAGCCGATACCAGTTGGCTGAATTCGAGCTTTGTGTTCTTGGCAACCTTTGTCCTGAA ACAGTGGAGGAAGCTATTGCCATGGTACCTTCTATCAAGACCAAAGGCCGAGCTCATGATGATGAAGCAATCGAAAAAATGCTGAATGACCTGTCCTTGA TCAAGAAATTTGAATAG
AA sequence Show only first row Show all	>Potri.007G080400.4 pacid=42766643 polypeptide=Potri.007G080400.4.p locus=Potri.007G080400 ID=Potri.007G080400.4.v4.1 annot-version=v4.1 MSGEEEENAAELKIGDDFLKAKCLMNCEVALILEHKYEQLQQMSDDPMNQVSQVFEKSLQYVKRFSRYKNPDAVRQVREILSRYQLAEFELCVLGNLCPE TVEEAIAMVPSIKTKGRAHDDEAIEKMLNDLSLIKKFE

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G09920		NRPB4, ATRPB15....	RNA polymerase II, Rpb4, core ...		Potri.007G080400 [exp]	0	1
AT1G14685	BBR_BPC	BBR/BPC2, ATBPC...	basic pentacysteine 2 (.1.2.3)		Potri.010G101400 [exp]	5.09	0.7873
AT3G08505	C3HZnF		zinc finger (CCCH-type/C3HC4-t...		Potri.009G062600 [exp]	7.07	0.7765
AT3G49430		SRP34A, SR34a, ...	Serine/Arginine-Rich Protein S...		Potri.012G021800 [exp]	12.44	0.7700
AT1G49180			protein kinase family protein ...		Potri.019G011600 [exp]	14.21	0.8395
AT5G45480			Protein of unknown function (D...		Potri.006G013400 [exp]	17.32	0.8064
AT2G25770			Polyketide cyclase/dehydrase a...		Potri.018G046100 [exp]	22.18	0.8245
AT1G02840		ATSRP34, SR1, S...	Serine/Arginine-Rich Protein S...		Potri.002G205025 [exp]	37.41	0.7207
AT1G67080		ABA4	abscisic acid (aba)-deficient ...		Potri.004G099500 [exp]	38.34	0.7971
AT4G14210		PDE226, PDS3	PIGMENT DEFECTIVE 226, phytoen...		Potri.002G235200 [exp]	44.27	0.7918	PDS.2
AT2G20740			Tetraspanin family protein (.1...		Potri.013G134200 [exp]	46.08	0.7145

Compare expression of checked genes

Potri.007G080400 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.