Plant FIBer expression Database

Potri.007G080500 [POPLAR]


External link
JGI Phytozome v13PopgenieAspWood                  
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT5G64830 293 / 8e-97 programmed cell death 2 C-terminal domain-containing protein (.1.2)
AT4G02220 66 / 1e-11 zinc finger (MYND type) family protein / programmed cell death 2 C-terminal domain-containing protein (.1)
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.002G201200
[exp]
52 / 4e-07 AT4G02220 511 / 0.0 zinc finger (MYND type) family protein / programmed cell death 2 C-terminal domain-containing protein (.1)
Flax homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10021075
[exp]
300 / 1e-99 AT5G64830 192 / 5e-59 programmed cell death 2 C-terminal domain-containing protein (.1.2)
Lus10017236
[exp]
216 / 1e-67 AT5G64830 196 / 3e-61 programmed cell death 2 C-terminal domain-containing protein (.1.2)
Lus10042748
[exp]
51 / 1e-06 AT4G33270 592 / 0.0 cell division cycle 20.1, Transducin family protein / WD-40 repeat family protein (.1)
Lus10029718
[exp]
48 / 8e-06 AT4G02220 349 / 2e-117 zinc finger (MYND type) family protein / programmed cell death 2 C-terminal domain-containing protein (.1)
PFAM info
Clan ID Clan name Pfam ID Pfam name Pfam description
PF04194 PDCD2_C Programmed cell death protein 2, C-terminal putative domain
Representative CDS sequence
>Potri.007G080500.1 pacid=42766576 polypeptide=Potri.007G080500.1.p locus=Potri.007G080500 ID=Potri.007G080500.1.v4.1 annot-version=v4.1
ATGGGTGGTGGTGGTGGAGTACTGCTAGGCATGCCTGGACCATGGGCTGATGATAATCGTGAACCATCTGATTTATACACTTCCAAAATCGGTGGACTCC
CTGATTGGCCTTTTCCTGCCGAGAACTTAGCACCCAATTTGCTTATTTGTGGTGCTTGTGGAAGTAAGCTCTGTCTTGTTGCCCAGGTTTACGCTCCAAT
TTCTAGTGGAACTTTAAACATTGAAGATCGAACTATTTTAGTGTTTGGTTGTATAATACCAAATTGTGGGAACACCCCTCTTAGCTGGCGAGCTCTTCGT
GTTCAGAAAGTGGACAGTGAGAGAGAGTCATCTGTGAGTACAGAAGAAGTGGTCCCTTCAACTCCACCTGTGTCAGTTTCAAAAACTAACTGGCTGGGTG
ATGATAGTGATGAAGACATTGATCTTGAAGCTTTGAGTAAAGCGCTTTCTGAGGCTGGAACATTGGCTTCTCACTCCAAGAAAAAAGATGGGAACCGACG
ATCCGAGTCTGTTGTAAAGAATTCCACTTTGGTGGCAAGGACAGGAGTAGACATGGAAACGCCTGTGGTTCCTTGCTTTTATATGTATACCCAAGAGCCA
TCCTCAAAGGACATTGTTTCTTCCATATGTTCAACTTACTCTGAACTTTCCGTTAAGGAGGAACAAATTTGCAATTACAATGATGATGAAATGGGAGATG
CAGGGGAACAGGAAGTGTATGAATATGATAAAGCTTTAAGTGCTGACAGGACATACCTCAAGTTCAAGAAACAGTTGGATGCAAACCCGGATCAATGCTC
CAGGCACTTGTATGGTGGAAAGCCACTTCTCGCCACAGCAGAGCTGGGAGACCCTGGCAACTGCAAGTTGTGTGGTGGTTTCAGGCACTTTGAGATGCAA
CTTATGCCCCAACTAATATCTTTTCTACTAGACGGGGCTGATGATTGTCAAAAAAATGTACTAGAGAATTGGAACTGGATGACCCTTGTCATCTATACTT
GCTCCAAGAGCTGTTCCAATTCATTTGATCGAGAAAAATCCACAACCAGTGGTTGGACTGTGGCAGAGGAAGCTGTTTTGGTACAATTTGAGAAAGCCCT
GCACGAGTCAATTCTCCCTGGTTATTTCTCATGA
AA sequence
>Potri.007G080500.1 pacid=42766576 polypeptide=Potri.007G080500.1.p locus=Potri.007G080500 ID=Potri.007G080500.1.v4.1 annot-version=v4.1
MGGGGGVLLGMPGPWADDNREPSDLYTSKIGGLPDWPFPAENLAPNLLICGACGSKLCLVAQVYAPISSGTLNIEDRTILVFGCIIPNCGNTPLSWRALR
VQKVDSERESSVSTEEVVPSTPPVSVSKTNWLGDDSDEDIDLEALSKALSEAGTLASHSKKKDGNRRSESVVKNSTLVARTGVDMETPVVPCFYMYTQEP
SSKDIVSSICSTYSELSVKEEQICNYNDDEMGDAGEQEVYEYDKALSADRTYLKFKKQLDANPDQCSRHLYGGKPLLATAELGDPGNCKLCGGFRHFEMQ
LMPQLISFLLDGADDCQKNVLENWNWMTLVIYTCSKSCSNSFDREKSTTSGWTVAEEAVLVQFEKALHESILPGYFS

DESeq2's median of ratios [POPLAR]

Mapped by: Order by: Show schematic diagram

Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol NWA:WTNWB:WTNWA:OE-ARK2NWB:OE-ARK2NWA:miRNA-ARK2NWB:miRNA-ARK2NW 0hrWT H20WT-NWTUA1dEY NWTUA1dEY+TUB15 NWTUA1dY+TUB9 NWPde NWNWA:WT GANWBWT GATW:WTTW:WT GANWA:OE-ARK2 GANWB:OE-ARK2 GATW:OE-ARK2TW:OE-ARK2 GANWA:miRNA-ARK2 GANWB:miRNA-ARK2 GATW:miRNA-ARK2TW:miRNA-ARK2 GATW 2hrTW 8hrTW 24hrTW 48hrTW 96hrTW 336hrWT ACC35S::etr1-1 H2035S::etr1-1 ACCLMX5::etr1-1 H20LMX5::etr1-1 ACCWT-TWTUA1dEY TWTUA1dEY+TUB15 TWTUA1dY+TUB9 TWPde TWOW:WTOW:WT GAOW:OE-ARK2OW:OE-ARK2 GAOW:miRNA-ARK2OW:miRNA-ARK2 GAOW 2hrOW 8hrOW 24hrOW 48hrOW 96hrOW 336hrRoot CTRRoot LongColdRoot LongDrougtRoot LongHeatRoot LongSaltRoot ShortColdRoot ShortDrougtRoot ShortHeatRoot ShortSaltPtr rootLeaf CTRLeaf LongColdLeaf LongDrougtLeaf LongHeatLeaf LongSaltLeaf ShortColdLeaf ShortDrougtLeaf ShortHeatLeaf ShortSaltPtr leafStem CTRStem LongColdStem LongDrougtStem LongHeatStem LongSaltStem ShortColdStem ShortDrougtStem ShortHeatStem ShortSaltPtr shootPtr xylemPtr phloemPtr fiberPtr vesselPtr fiber vessel ray
AT5G64830 programmed cell death 2 C-term... Potri.007G080500
[exp]
0 1
AT2G02880 mucin-related (.1) Potri.015G004400
[exp]
4.24 0.7802
AT2G47790 Transducin/WD40 repeat-like su... Potri.002G205600
[exp]
4.69 0.7833
AT5G58230 MSI1, MEE70, AT... MATERNAL EFFECT EMBRYO ARREST ... Potri.014G179700
[exp]
8.24 0.7230
AT1G77210 AtSTP14 sugar transport protein 14, su... Potri.018G085200
[exp]
11.04 0.7909 RCSTG.1
AT1G28250 unknown protein Potri.004G045400
[exp]
14.35 0.6899
Potri.008G175200
[exp]
15.87 0.7227
AT1G03330 Small nuclear ribonucleoprotei... Potri.004G219000
[exp]
19.07 0.7506
AT3G57090 FIS1A, BIGYIN FISSION 1A, Tetratricopeptide ... Potri.006G041900
[exp]
19.89 0.7658
AT2G27490 ATCOAE dephospho-CoA kinase family (.... Potri.010G206900
[exp]
20.49 0.7617
AT4G11240 TOPP7 Calcineurin-like metallo-phosp... Potri.001G098600
[exp]
20.59 0.6892 PP1.4

Potri.007G080500 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.