Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol	GCN2.1
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G64840 935 / 0 ABCF5, ATGCN5 ATP-binding cassette F5, general control non-repressible 5 (.1) AT5G09930 883 / 0 ABCF2, ATGCN2 ATP-binding cassette F2, ABC transporter family protein (.1) AT5G60790 209 / 5e-59 ABCF1, ATGCN1 ARABIDOPSIS THALIANA GENERAL CONTROL NON-REPRESSIBLE 1, ATP-binding cassette F1, ABC transporter family protein (.1) AT1G64550 207 / 2e-57 SCORD5, AtGCN20, AtABCF3, ABCF3, ATGCN3 susceptible to coronatine-deficient Pst DC3000 5, general control non-repressible 20, ATP-binding cassette F3, general control non-repressible 3 (.1) AT3G54540 190 / 2e-51 ABCF4, ATGCN4 ATP-binding cassette F4, general control non-repressible 4 (.1) AT1G10680 70 / 4e-12 ABCB10, PGP10 ATP-binding cassette B10, P-glycoprotein 10 (.1) AT2G36910 70 / 4e-12 ATMDR1, ATPGP1, PGP1, ABCB1 P-GLYCOPROTEIN 1, ARABIDOPSIS THALIANA P GLYCOPROTEIN1, ATP-binding cassette B1, ATP binding cassette subfamily B1 (.1) AT4G25960 69 / 1e-11 ABCB2, PGP2 ATP-binding cassette B2, P-glycoprotein 2 (.1) AT5G03910 68 / 1e-11 ABCB29, ATATH12 ARABIDOPSIS THALIANA ABC TRANSPORTER HOMOLOG 12, ATP-binding cassette B29, ABC2 homolog 12 (.1) AT1G27940 68 / 2e-11 ABCB13, PGP13 ATP-binding cassette B13, P-glycoprotein 13 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.005G084800 [exp] 1103 / 0 AT5G64840 983 / 0.0 ATP-binding cassette F5, general control non-repressible 5 (.1) Potri.004G214300 [exp] 210 / 3e-59 AT5G60790 944 / 0.0 ARABIDOPSIS THALIANA GENERAL CONTROL NON-REPRESSIBLE 1, ATP-binding cassette F1, ABC transporter family protein (.1) Potri.009G007800 [exp] 204 / 6e-57 AT5G60790 955 / 0.0 ARABIDOPSIS THALIANA GENERAL CONTROL NON-REPRESSIBLE 1, ATP-binding cassette F1, ABC transporter family protein (.1) Potri.010G254400 [exp] 199 / 2e-54 AT3G54540 1049 / 0.0 ATP-binding cassette F4, general control non-repressible 4 (.1) Potri.008G003300 [exp] 199 / 3e-54 AT3G54540 1060 / 0.0 ATP-binding cassette F4, general control non-repressible 4 (.1) Potri.001G087300 [exp] 194 / 1e-52 AT1G64550 1145 / 0.0 susceptible to coronatine-deficient Pst DC3000 5, general control non-repressible 20, ATP-binding cassette F3, general control non-repressible 3 (.1) Potri.006G211700 [exp] 80 / 2e-15 AT5G03910 709 / 0.0 ARABIDOPSIS THALIANA ABC TRANSPORTER HOMOLOG 12, ATP-binding cassette B29, ABC2 homolog 12 (.1) Potri.011G133800 [exp] 74 / 4e-13 AT3G28345 1268 / 0.0 multi-drug resistance 13, ATP-binding cassette B15, ABC transporter family protein (.1) Potri.016G093600 [exp] 73 / 5e-13 AT2G36910 2120 / 0.0 P-GLYCOPROTEIN 1, ARABIDOPSIS THALIANA P GLYCOPROTEIN1, ATP-binding cassette B1, ATP binding cassette subfamily B1 (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10006804 [exp] 922 / 0 AT5G64840 1050 / 0.0 ATP-binding cassette F5, general control non-repressible 5 (.1) Lus10005798 [exp] 919 / 0 AT5G64840 1049 / 0.0 ATP-binding cassette F5, general control non-repressible 5 (.1) Lus10028810 [exp] 211 / 3e-59 AT5G60790 1013 / 0.0 ARABIDOPSIS THALIANA GENERAL CONTROL NON-REPRESSIBLE 1, ATP-binding cassette F1, ABC transporter family protein (.1) Lus10038681 [exp] 209 / 8e-59 AT5G60790 1021 / 0.0 ARABIDOPSIS THALIANA GENERAL CONTROL NON-REPRESSIBLE 1, ATP-binding cassette F1, ABC transporter family protein (.1) Lus10032431 [exp] 197 / 1e-53 AT1G64550 1244 / 0.0 susceptible to coronatine-deficient Pst DC3000 5, general control non-repressible 20, ATP-binding cassette F3, general control non-repressible 3 (.1) Lus10023043 [exp] 198 / 7e-53 AT1G64550 1249 / 0.0 susceptible to coronatine-deficient Pst DC3000 5, general control non-repressible 20, ATP-binding cassette F3, general control non-repressible 3 (.1) Lus10016184 [exp] 192 / 9e-52 AT3G54540 1141 / 0.0 ATP-binding cassette F4, general control non-repressible 4 (.1) Lus10037947 [exp] 189 / 5e-51 AT5G60790 990 / 0.0 ARABIDOPSIS THALIANA GENERAL CONTROL NON-REPRESSIBLE 1, ATP-binding cassette F1, ABC transporter family protein (.1) Lus10029363 [exp] 189 / 6e-51 AT3G54540 1139 / 0.0 ATP-binding cassette F4, general control non-repressible 4 (.1) Lus10017024 [exp] 79 / 6e-15 AT5G03910 712 / 0.0 ARABIDOPSIS THALIANA ABC TRANSPORTER HOMOLOG 12, ATP-binding cassette B29, ABC2 homolog 12 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0023 [poplar] [flax] P-loop_NTPase PF00005 [poplar] [flax] ABC_tran ABC transporter CL0023 [poplar] [flax] P-loop_NTPase PF12848 [poplar] [flax] ABC_tran_Xtn ABC transporter
Representative CDS sequence Show only first row Show all	>Potri.007G080600.1 pacid=42765793 polypeptide=Potri.007G080600.1.p locus=Potri.007G080600 ID=Potri.007G080600.1.v4.1 annot-version=v4.1 ATGGACTTGTCCACCAAACTCCACTCTACCTTCTTCACCGGCTCAACCTTTTTCAATCCTCGACAAAAATCCACTCTTTTTAAACCGAACCCATCTCTCT TATCCACTAAATACAACACTAATCCCTTCAAATTCCCTACCAGAAGATCGAATTATAAAACCAAAGCACGCTTATCAACTGCCACGGTGGAAACATCTGG TGCTGACTCCAAAACTGACATTGAATCATTGTTTTCGAGCAATTCGGATGTTGAGTTCGACAGGAAACGCTCAAACAAGCAGTCAAACGGTGGGGCTTCA GGGATATCTTCAGGTATTAAGCTAGAAAACATAAGCAAGAGTTATAAAGGAGTTACTGTTTTGAAAGACGTGACTTGGGAGGTGAAAAAAGGTGAGAAAG TTGGATTAGTTGGTGTAAATGGAGCGGGGAAAACGACCCAGTTGAGAATTATAACTGGACAAGAGGAGCCCGATTCAGGGAATGTGATTAAAGCCAAAGC GAATATGAAGATTGCGTTTTTAAGTCAAGAGTTCGAGGTTTCTATGAGTAGGACCGTGAAGGAGGAGTTTATGAGTGCTTTTAAAGAGGAAATGGAGATT GCTGAGAGGCTGGAAAAGGTGCAAAAGGCTATAGAGGGAGCTGTGGAGGATTTGGACTTAATGGGGAGGTTATTGGATGAGTTTGATTTGTTGCAGAGAA GAGCACAAGCTGTGGACTTGGATGAAGTTGATGCAAAGATTAGTAAGTTGATGCCTGAGCTCGGGTTTTCGCCTGAGGACTCAGATAGGTTGGTGGCTTC TTTTAGTGGTGGGTGGCAGATGAGGATGTCGCTTGGGAAGATTTTGCTTCAGGACCCAGATTTGTTGCTTTTGGATGAACCCACAAACCACCTTGACCTT GACACGATTGAGTGGCTTGAAGGCTATCTCCAGAAGCAAGATGTGCCAATGGTCATCATATCTCATGACAGAGCCTTTCTTGATCAATTATGTACGAAAA TTGTGGAGACTGATATGGGCGTGTCAAGGACATTTGAGGGGAATTATTCTCAATACATCATATCAAAAGCAGAATGGGTTGAAGCTCAGCTTGCTGCTTG GGAGAAGCAACAAAAGGAAATTGAGCACACAAGAGAATTAATAAGTAGGTTAGGTGCAGGAGCAAACTCTGGCCGTGCTTCTTCTGCTGAGAAGAAACTG GAGAGACTTCAAGAAGAGGATCAAATAGAGAAGCCATTTCAACATAAACAGATGAAGATCAGGTTCCCAGAGCGCGGGAGAAGTGGAAGATCTGTTGTTG CCATCAATAATTTGGAATTTGGTTTTGAGGATAAGGTGCTTTTTAATAAGACAAATCTTATGATAGAAAGAGGCGAGAAAATTGCTATTATTGGTCCAAA TGGATGTGGTAAGAGTACTTTACTGAAACTGATCATGGGCTTAGAGAAGCCAACAGGAGGCCAAATTATGGTTGGGGAACATAATGTACTACCAAACTAT TTTGAGCAGAACCAGGCTGAGGCACTTGATTTAGATAAAACAGTAATTCAAACAGTGGAAGAAGTTGCGGAGGACTGGAGACTTGATGATATAAAGGGAC TCCTTGGTCGTTGTAACTTCAAAGCTGATATGCTTGATAGAAAAGTTTCACTTTTGAGTGGTGGTGAGAAGGCACGTTTAGCATTTTGCAAATTCATGGT AAAACCTTCAACTTTACTAGTTTTGGACGAACCAACTAATCACTTGGATATACCTTCAAAAGAGATGCTTGAGGAGGCCATATCAGAATACAGTGGCACA GTCATTACAGTTTCTCATGACCGGTACTTCATAAAGCAAATAGTTAATAGAGTAGTGGAAGTCAAAGACGACAAGTTACAGGATTATGCAGGCGATTACA ATTATTATCTAGAGAAAAATCTGGACGCAAGGGAGAAAGAGCTTGAACGTGAGGCAGAGCTTGAGGACAAGGCTCCCAAAGTAAAGGCCAAATCCAAGAT GTCAAAGGCTGAGAAGGAAGCTCGAAAGAAACAAAAAATGAAGGCCTTTCAAGCTGCCAAACAAAAGTCAAAAGGGTCGAAGAATGCTAAGAGATGGAAT TGA
AA sequence Show only first row Show all	>Potri.007G080600.1 pacid=42765793 polypeptide=Potri.007G080600.1.p locus=Potri.007G080600 ID=Potri.007G080600.1.v4.1 annot-version=v4.1 MDLSTKLHSTFFTGSTFFNPRQKSTLFKPNPSLLSTKYNTNPFKFPTRRSNYKTKARLSTATVETSGADSKTDIESLFSSNSDVEFDRKRSNKQSNGGAS GISSGIKLENISKSYKGVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIITGQEEPDSGNVIKAKANMKIAFLSQEFEVSMSRTVKEEFMSAFKEEMEI AERLEKVQKAIEGAVEDLDLMGRLLDEFDLLQRRAQAVDLDEVDAKISKLMPELGFSPEDSDRLVASFSGGWQMRMSLGKILLQDPDLLLLDEPTNHLDL DTIEWLEGYLQKQDVPMVIISHDRAFLDQLCTKIVETDMGVSRTFEGNYSQYIISKAEWVEAQLAAWEKQQKEIEHTRELISRLGAGANSGRASSAEKKL ERLQEEDQIEKPFQHKQMKIRFPERGRSGRSVVAINNLEFGFEDKVLFNKTNLMIERGEKIAIIGPNGCGKSTLLKLIMGLEKPTGGQIMVGEHNVLPNY FEQNQAEALDLDKTVIQTVEEVAEDWRLDDIKGLLGRCNFKADMLDRKVSLLSGGEKARLAFCKFMVKPSTLLVLDEPTNHLDIPSKEMLEEAISEYSGT VITVSHDRYFIKQIVNRVVEVKDDKLQDYAGDYNYYLEKNLDAREKELEREAELEDKAPKVKAKSKMSKAEKEARKKQKMKAFQAAKQKSKGSKNAKRWN

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G64840		ABCF5, ATGCN5	ATP-binding cassette F5, gener...		Potri.007G080600 [exp]	0	1	GCN2.1
AT5G58330			lactate/malate dehydrogenase f...		Potri.008G031700 [exp]	3.31	0.9759
AT3G02730		TRXF1, ATF1	thioredoxin F-type 1 (.1)		Potri.019G054800 [exp]	4.69	0.9733	PtrcTrxf
AT1G50020			unknown protein		Potri.001G289400 [exp]	5.65	0.9555
AT5G22830		MRS2-11, GMN10,...	MAGNESIUM TRANSPORTER 10, magn...		Potri.009G151400 [exp]	6.00	0.9550	ATMGT10.1
AT5G67030		NPQ2, LOS6, IBS...	NON-PHOTOCHEMICAL QUENCHING 2,...		Potri.007G044300 [exp]	6.00	0.9610	Pt-ZEAEPOX.1
AT4G23420			NAD(P)-binding Rossmann-fold s...		Potri.015G146600 [exp]	8.36	0.9567
AT3G21790			UDP-Glycosyltransferase superf...		Potri.006G007350 [exp]	8.36	0.9642
AT5G42270		FTSH5, VAR1	VARIEGATED 1, FtsH extracellul...		Potri.002G012000 [exp]	8.48	0.9637	FTSH2.2
AT4G11410			NAD(P)-binding Rossmann-fold s...		Potri.003G128700 [exp]	8.66	0.9479
AT5G20140			SOUL heme-binding family prote...		Potri.018G073501 [exp]	10.09	0.9729

Compare expression of checked genes

Potri.007G080600 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.