Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G39520 647 / 0 GTP-binding protein-related (.1) AT1G17470 383 / 8e-132 ATDRG1 developmentally regulated G-protein 1 (.1.2) AT1G72660 379 / 2e-130 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1.2.3) AT5G18570 71 / 3e-13 EMB3138, ATOBGL, CPSAR1, EMB269, ATOBGC EMBRYO DEFECTIVE 3138, EMBRYO DEFECTIVE 269, chloroplastic SAR1, OBG-like protein, GTP1/OBG family protein (.1) AT1G07615 58 / 4e-09 GTP-binding protein Obg/CgtA (.1) AT1G30580 50 / 1e-06 GTP binding (.1) AT5G66470 50 / 1e-06 RNA binding;GTP binding (.1) AT1G56050 50 / 2e-06 GTP-binding protein-related (.1) AT1G50920 49 / 4e-06 Nucleolar GTP-binding protein (.1) AT1G10300 45 / 8e-05 Nucleolar GTP-binding protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.003G063500 [exp] 393 / 6e-136 AT1G72660 678 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1.2.3) Potri.001G170300 [exp] 389 / 3e-134 AT1G72660 677 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1.2.3) Potri.010G022400 [exp] 69 / 2e-12 AT5G18570 687 / 0.0 EMBRYO DEFECTIVE 3138, EMBRYO DEFECTIVE 269, chloroplastic SAR1, OBG-like protein, GTP1/OBG family protein (.1) Potri.002G029600 [exp] 67 / 5e-12 AT5G18570 144 / 7e-37 EMBRYO DEFECTIVE 3138, EMBRYO DEFECTIVE 269, chloroplastic SAR1, OBG-like protein, GTP1/OBG family protein (.1) Potri.001G239600 [exp] 56 / 3e-08 AT1G07615 511 / 3e-178 GTP-binding protein Obg/CgtA (.1) Potri.011G164000 [exp] 50 / 2e-06 AT1G30580 691 / 0.0 GTP binding (.1) Potri.001G465900 [exp] 49 / 2e-06 AT1G30580 681 / 0.0 GTP binding (.1) Potri.001G457900 [exp] 49 / 4e-06 AT1G56050 663 / 0.0 GTP-binding protein-related (.1) Potri.007G021900 [exp] 49 / 4e-06 AT5G66470 535 / 0.0 RNA binding;GTP binding (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10005800 [exp] 653 / 0 AT4G39520 682 / 0.0 GTP-binding protein-related (.1) Lus10006801 [exp] 624 / 0 AT4G39520 655 / 0.0 GTP-binding protein-related (.1) Lus10015662 [exp] 387 / 1e-133 AT1G72660 760 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1.2.3) Lus10037676 [exp] 383 / 7e-132 AT1G72660 756 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1.2.3) Lus10034166 [exp] 71 / 5e-13 AT5G18570 647 / 0.0 EMBRYO DEFECTIVE 3138, EMBRYO DEFECTIVE 269, chloroplastic SAR1, OBG-like protein, GTP1/OBG family protein (.1) Lus10043418 [exp] 70 / 9e-13 AT5G18570 724 / 0.0 EMBRYO DEFECTIVE 3138, EMBRYO DEFECTIVE 269, chloroplastic SAR1, OBG-like protein, GTP1/OBG family protein (.1) Lus10024297 [exp] 68 / 2e-12 AT5G18570 171 / 2e-46 EMBRYO DEFECTIVE 3138, EMBRYO DEFECTIVE 269, chloroplastic SAR1, OBG-like protein, GTP1/OBG family protein (.1) Lus10016548 [exp] 58 / 7e-09 AT1G07615 511 / 1e-178 GTP-binding protein Obg/CgtA (.1) Lus10040813 [exp] 56 / 3e-08 AT1G07615 293 / 1e-95 GTP-binding protein Obg/CgtA (.1) Lus10038748 [exp] 52 / 4e-07 AT1G50920 940 / 0.0 Nucleolar GTP-binding protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0023 [poplar] [flax] P-loop_NTPase PF01926 [poplar] [flax] MMR_HSR1 50S ribosome-binding GTPase CL0072 [poplar] [flax] Ubiquitin PF02824 [poplar] [flax] TGS TGS domain CL0072 [poplar] [flax] PF16897 [poplar] [flax] MMR_HSR1_Xtn C-terminal region of MMR_HSR1 domain
Representative CDS sequence Show only first row Show all	>Potri.007G080900.1 pacid=42765940 polypeptide=Potri.007G080900.1.p locus=Potri.007G080900 ID=Potri.007G080900.1.v4.1 annot-version=v4.1 ATGTCGACTGTAATGCAGAAAATCAAAGACATCGAAGATGAGATGGCAAGGACTCAAAAAAACAAGGCTACAGCTCACCATCTCGGCCTGCTCAAGGCAA AACTTGCAAAGCTACGAAGGGAACTTCTTGAGCCATCGGCGAAAGGAGGTGGTGGTGCTGGTCAAGGTTTTGACGTTACTAAAAGTGGAGATGCTAGAGT TGGTCTTGTGGGTTTTCCTTCGGTTGGGAAATCCACTCTTCTAAATAAATTAACAGGGACATTTTCGGAGGTTGCTTCCTATGAGTTTACCACCCTGACT TGCATCCCTGGAGTGATCGTTTATAAAGGAGCTAAAATTCAGTTGTTGGATCTCCCTGGTATCATCGAGGGTGCTAAGGATGGAAAAGGTCGAGGAAGGC AGGTGATCAGTACTGCTAGGACATGCAACTGTATCTTAATTGTCCTCGATGCAATAAAGCCAATAACTCACAAGCGTCTGATAGAGAAAGAGCTTGAAGG ATTTGGCATAAGGTTAAATAAGGAACCGCCTAATCTGACATTCAGAAAGAAAGATAAAGGTGGAATTAATTTTACATCAACAGTTGCCAACACACACCTT GATCTTGATACTGTGAAGGCAATATGCAGTGAATACAGGATGCACAATGCTGATATTACTCTGAGGTATGATGCAACTGCTGATGACCTCATAGATGTCA TTGAGGGGAGTAGAATATACATGCCTTGCATCTATGTGGTGAACAAAATCGATCAGATTACACTTGAAGAGCTGGAGATTTTGGACAAACTTCCTCACTA CTGCCCTGTCAGTGCTCACCTGGAATGGAACCTTGATGGTTTGCTGGATAAAGTGTGGGAGTATCTAAATTTAACTCGCATATATACAAAGCCAAAAGGG ATGAATCCAGACTATGAGGACCCTGTGATATTGTCATCGAAGAAGCGGACAGTTGAGGACTTCTGTGAACGAATTCACAAGGACATGTTGAAACAATTCA AGTATGCTCTGGTATGGGGGTCAAGCGCGAAACACAAACCGCAAAGGGTTGGCAAGGAACATGAACTGGAGGATGAAGATGTCGTGCAGATTATCAAAAA GGTGTGA
AA sequence Show only first row Show all	>Potri.007G080900.1 pacid=42765940 polypeptide=Potri.007G080900.1.p locus=Potri.007G080900 ID=Potri.007G080900.1.v4.1 annot-version=v4.1 MSTVMQKIKDIEDEMARTQKNKATAHHLGLLKAKLAKLRRELLEPSAKGGGGAGQGFDVTKSGDARVGLVGFPSVGKSTLLNKLTGTFSEVASYEFTTLT CIPGVIVYKGAKIQLLDLPGIIEGAKDGKGRGRQVISTARTCNCILIVLDAIKPITHKRLIEKELEGFGIRLNKEPPNLTFRKKDKGGINFTSTVANTHL DLDTVKAICSEYRMHNADITLRYDATADDLIDVIEGSRIYMPCIYVVNKIDQITLEELEILDKLPHYCPVSAHLEWNLDGLLDKVWEYLNLTRIYTKPKG MNPDYEDPVILSSKKRTVEDFCERIHKDMLKQFKYALVWGSSAKHKPQRVGKEHELEDEDVVQIIKKV

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT4G39520			GTP-binding protein-related (....		Potri.007G080900 [exp]	0	1
AT2G39630			Nucleotide-diphospho-sugar tra...		Potri.008G055700 [exp]	3.87	0.8173
AT4G00026		SD3	SEGREGATION DISTORTION 3, unkn...		Potri.014G054400 [exp]	7.74	0.7204
AT3G27640			Transducin/WD40 repeat-like su...		Potri.001G345400 [exp]	7.87	0.8065
AT4G35987			S-adenosyl-L-methionine-depend...		Potri.007G057000 [exp]	11.61	0.7064
AT1G13330		AHP2	Arabidopsis Hop2 homolog (.1)		Potri.008G118800 [exp]	12.68	0.7454
AT2G29540		ATRPAC14, ATRPC...	RNApolymerase 14 kDa subunit (...		Potri.001G246600 [exp]	13.19	0.7050	Pt-ATRPC14.1
AT5G17440			LUC7 related protein (.1)		Potri.013G084800 [exp]	14.07	0.7139
AT2G25770			Polyketide cyclase/dehydrase a...		Potri.010G193200 [exp]	14.73	0.7041
AT5G10350			RNA-binding (RRM/RBD/RNP motif...		Potri.005G073200 [exp]	15.81	0.7347
					Potri.001G178600 [exp]	17.54	0.7717

Compare expression of checked genes

Potri.007G080900 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.