Plant FIBer expression Database

SK3 (Potri.007G081000) [POPLAR]


External link
JGI Phytozome v13PopgenieAspWood                  
Symbol SK3
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT2G21940 323 / 8e-111 ATSK1 shikimate kinase 1 (.1.2.3.4.5)
AT4G39540 307 / 1e-104 ATSK2 shikimate kinase 2 (.1.2.3)
AT3G26900 124 / 8e-34 ATSKL1 Arabidopsis thaliana shikimate kinase-like 1, shikimate kinase like 1 (.1.2.3)
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.005G084600
[exp]
523 / 0 AT2G21940 304 / 2e-103 shikimate kinase 1 (.1.2.3.4.5)
Potri.002G061100
[exp]
229 / 8e-75 AT2G21940 224 / 2e-72 shikimate kinase 1 (.1.2.3.4.5)
Potri.017G062800
[exp]
131 / 2e-36 AT3G26900 291 / 9e-99 Arabidopsis thaliana shikimate kinase-like 1, shikimate kinase like 1 (.1.2.3)
Potri.019G048200
[exp]
40 / 0.0006 AT2G16790 228 / 1e-76 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1.2)
Flax homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10035843
[exp]
324 / 6e-111 AT2G21940 304 / 5e-103 shikimate kinase 1 (.1.2.3.4.5)
Lus10036626
[exp]
293 / 5e-96 AT5G64860 482 / 1e-165 disproportionating enzyme (.1)
Lus10035171
[exp]
100 / 8e-25 AT3G26900 203 / 1e-64 Arabidopsis thaliana shikimate kinase-like 1, shikimate kinase like 1 (.1.2.3)
Lus10032000
[exp]
66 / 5e-12 AT3G26900 141 / 5e-40 Arabidopsis thaliana shikimate kinase-like 1, shikimate kinase like 1 (.1.2.3)
PFAM info
Clan ID Clan name Pfam ID Pfam name Pfam description
CL0023 P-loop_NTPase PF13238 AAA_18 AAA domain
Representative CDS sequence
>Potri.007G081000.7 pacid=42765717 polypeptide=Potri.007G081000.7.p locus=Potri.007G081000 ID=Potri.007G081000.7.v4.1 annot-version=v4.1
ATGGAGGCAAATCTTGCACAAAGAATGCAAATTTCGACAACATGGATTGATTCATACAAGTTTCCAAGAAAACCAACTAGTTCCCTGCGGTTTTCGGGGA
GATTTAAGGAACAGAAGAGACTCCAAGTGTTTGTTTCTGCTCAGTTTCGGCCTGTAAGAGATGAAAATCGACATAGACAGGCTTCTTTTGAGGTTTCTTG
TTCTTGTAACAATTCTCAAGTTTCAACGTTGGAATCTGAAAGTCTCCAGGATTTGTTTGGCGAGGAAGCTTTGATTTTGAAGAATAAGTCACAAGAGATT
GAGCCATATTTAAATGGACGCTGTATATATCTTGTTGGGATGATGGGCTCTGGAAAAACTACAGTGGGAAAGATTCTCTCACGATCAATTCGTTATTCAT
TCTGTGACTGTGACAAACTGGTGGAGCAGGATGTTGGTGTGCCTTCTGTAGCTGAAATATTTGAAATATATGGAGAGGATTTCTTCAGAGATAAAGAGAC
TGAGGCATTAGAAAAGCTATCAATAGAACACCGGTTTGTTGTTTCCACTGGTGGCGGTGCTGTGATACGGGATGAAAACTGGATATACATGAGGAAGGGG
ATTAGTGTCTGGTTAGATGTGCCTTTGGAAGAATTGGCACAGAGGATCGCGGCTGTAGGAACCAAGTCTCGCCCCCTTTTGGATAATGAATCAGGAGATG
CATACAACACTGCATTCAGACGCCTTTCTACTCTGTTTGAGAAGAGACATAAAGCTTATGAAAATGCCAAGGCGAGGGTTTCTCTGGAAAATATTGCAGC
CAAACTAGGATATAAAGATGTATCCAGTATCACACCTGCTATGATTGCGATTGAGGCACTTGAACAAATTGGAAATGTCCTATAG
AA sequence
>Potri.007G081000.7 pacid=42765717 polypeptide=Potri.007G081000.7.p locus=Potri.007G081000 ID=Potri.007G081000.7.v4.1 annot-version=v4.1
MEANLAQRMQISTTWIDSYKFPRKPTSSLRFSGRFKEQKRLQVFVSAQFRPVRDENRHRQASFEVSCSCNNSQVSTLESESLQDLFGEEALILKNKSQEI
EPYLNGRCIYLVGMMGSGKTTVGKILSRSIRYSFCDCDKLVEQDVGVPSVAEIFEIYGEDFFRDKETEALEKLSIEHRFVVSTGGGAVIRDENWIYMRKG
ISVWLDVPLEELAQRIAAVGTKSRPLLDNESGDAYNTAFRRLSTLFEKRHKAYENAKARVSLENIAAKLGYKDVSSITPAMIAIEALEQIGNVL

DESeq2's median of ratios [POPLAR]

Mapped by: Order by: Show schematic diagram

Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol NWA:WTNWB:WTNWA:OE-ARK2NWB:OE-ARK2NWA:miRNA-ARK2NWB:miRNA-ARK2NW 0hrWT H20WT-NWTUA1dEY NWTUA1dEY+TUB15 NWTUA1dY+TUB9 NWPde NWNWA:WT GANWBWT GATW:WTTW:WT GANWA:OE-ARK2 GANWB:OE-ARK2 GATW:OE-ARK2TW:OE-ARK2 GANWA:miRNA-ARK2 GANWB:miRNA-ARK2 GATW:miRNA-ARK2TW:miRNA-ARK2 GATW 2hrTW 8hrTW 24hrTW 48hrTW 96hrTW 336hrWT ACC35S::etr1-1 H2035S::etr1-1 ACCLMX5::etr1-1 H20LMX5::etr1-1 ACCWT-TWTUA1dEY TWTUA1dEY+TUB15 TWTUA1dY+TUB9 TWPde TWOW:WTOW:WT GAOW:OE-ARK2OW:OE-ARK2 GAOW:miRNA-ARK2OW:miRNA-ARK2 GAOW 2hrOW 8hrOW 24hrOW 48hrOW 96hrOW 336hrRoot CTRRoot LongColdRoot LongDrougtRoot LongHeatRoot LongSaltRoot ShortColdRoot ShortDrougtRoot ShortHeatRoot ShortSaltPtr rootLeaf CTRLeaf LongColdLeaf LongDrougtLeaf LongHeatLeaf LongSaltLeaf ShortColdLeaf ShortDrougtLeaf ShortHeatLeaf ShortSaltPtr leafStem CTRStem LongColdStem LongDrougtStem LongHeatStem LongSaltStem ShortColdStem ShortDrougtStem ShortHeatStem ShortSaltPtr shootPtr xylemPtr phloemPtr fiberPtr vesselPtr fiber vessel ray
AT2G21940 ATSK1 shikimate kinase 1 (.1.2.3.4.5... Potri.007G081000
[exp]
0 1 SK3
AT2G33120 ATVAMP722, SAR1 ARABIDOPSIS THALIANA VESICLE-A... Potri.012G119600
[exp]
1.41 0.9121
AT4G12350 MYB ATMYB42 myb domain protein 42 (.1) Potri.003G114100
[exp]
2.82 0.9031 MYB85.1
AT3G51780 ATBAG4 BCL-2-associated athanogene 4 ... Potri.009G074300
[exp]
3.74 0.9115
AT5G54570 BGLU41 beta glucosidase 41 (.1) Potri.001G409900
[exp]
4.12 0.8773 PLIN-GEN.26
AT3G10410 CPY, SCPL49 CARBOXYPEPTIDASE Y, SERINE CAR... Potri.008G034800
[exp]
4.24 0.8951
AT5G62200 Embryo-specific protein 3, (AT... Potri.015G132700
[exp]
6.00 0.8728
AT2G39770 VTC1, SOZ1, GMP... VITAMIN C DEFECTIVE 1, SENSITI... Potri.010G198800
[exp]
7.61 0.8593 EMB101.1
AT1G30900 VSR6, VSR3;3, B... VACUOLAR SORTING RECEPTOR 3;3,... Potri.003G155200
[exp]
7.93 0.9036
AT2G40470 AS2 ASL11, LBD15 ASYMMETRIC LEAVES2-LIKE 11, LO... Potri.013G156200
[exp]
8.12 0.8862
AT2G32720 B5 #4, B5#4, AT... ARABIDOPSIS CYTOCHROME B5 ISOF... Potri.002G242500
[exp]
8.94 0.9023

Potri.007G081000 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.