Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G19930 869 / 0 RNA-dependent RNA polymerase family protein (.1) AT2G19910 846 / 0 RNA-dependent RNA polymerase family protein (.1) AT2G19920 773 / 0 RNA-dependent RNA polymerase family protein (.1) AT3G49500 126 / 4e-29 SDE1, SGS2, RDR6 SUPPRESSOR OF GENE SILENCING 2, SILENCING DEFECTIVE 1, RNA-dependent RNA polymerase 6 (.1) AT4G11130 123 / 3e-28 SMD1, RDR2 SILENCING MOVEMENT DEFICIENT 1, RNA-dependent RNA polymerase 2 (.1) AT1G14790 108 / 9e-24 ATRDRP1, RDR1 RNA-dependent RNA polymerase 1 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G164400 [exp] 1744 / 0 AT2G19930 861 / 0.0 RNA-dependent RNA polymerase family protein (.1) Potri.008G136100 [exp] 125 / 6e-29 AT1G14790 1448 / 0.0 RNA-dependent RNA polymerase 1 (.1) Potri.018G028100 [exp] 121 / 1e-27 AT3G49500 1753 / 0.0 SUPPRESSOR OF GENE SILENCING 2, SILENCING DEFECTIVE 1, RNA-dependent RNA polymerase 6 (.1) Potri.006G253500 [exp] 121 / 1e-27 AT3G49500 1739 / 0.0 SUPPRESSOR OF GENE SILENCING 2, SILENCING DEFECTIVE 1, RNA-dependent RNA polymerase 6 (.1) Potri.015G073700 [exp] 117 / 2e-26 AT4G11130 1422 / 0.0 SILENCING MOVEMENT DEFICIENT 1, RNA-dependent RNA polymerase 2 (.1) Potri.008G135800 [exp] 103 / 2e-22 AT1G14790 1205 / 0.0 RNA-dependent RNA polymerase 1 (.1) Potri.010G105200 [exp] 90 / 5e-18 AT1G14790 1298 / 0.0 RNA-dependent RNA polymerase 1 (.1) Potri.010G104900 [exp] 84 / 3e-16 AT1G14790 1276 / 0.0 RNA-dependent RNA polymerase 1 (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10012965 [exp] 716 / 0 AT2G19930 645 / 0.0 RNA-dependent RNA polymerase family protein (.1) Lus10019164 [exp] 126 / 3e-29 AT1G14790 1447 / 0.0 RNA-dependent RNA polymerase 1 (.1) Lus10042134 [exp] 121 / 1e-27 AT4G11130 1368 / 0.0 SILENCING MOVEMENT DEFICIENT 1, RNA-dependent RNA polymerase 2 (.1) Lus10002361 [exp] 110 / 6e-25 AT4G11130 659 / 0.0 SILENCING MOVEMENT DEFICIENT 1, RNA-dependent RNA polymerase 2 (.1) Lus10002910 [exp] 108 / 1e-23 AT3G49500 1203 / 0.0 SUPPRESSOR OF GENE SILENCING 2, SILENCING DEFECTIVE 1, RNA-dependent RNA polymerase 6 (.1) Lus10002017 [exp] 105 / 1e-22 AT3G49500 1605 / 0.0 SUPPRESSOR OF GENE SILENCING 2, SILENCING DEFECTIVE 1, RNA-dependent RNA polymerase 6 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF05183 [poplar] [flax] RdRP RNA dependent RNA polymerase
Representative CDS sequence Show only first row Show all	>Potri.007G081300.1 pacid=42765482 polypeptide=Potri.007G081300.1.p locus=Potri.007G081300 ID=Potri.007G081300.1.v4.1 annot-version=v4.1 ATGGCAGAGATAAATAATGATAAAATAGTGCCACTGCCTTGTGTAGTGGAGGAACTGATAGCCAAAATCTGTAGGGAGCAGAATCGAAGGCCGCTAGAAA CCAATACGAGGTTGACACTGGCTTCGTTAGGGGAAGAAGTTGCTTTAAATATTCTCTGGAGAATTTCTGGTCAAGAGATTAGAAAAAGTTTTGACGGTTT CGTTCTGCACTTGGCCAAACAGTTCTCTCCTAATATCAATGCTTCTTCTTCTTCCCCCAACATACACTCCTCCCTCTCCCCATCTCCTCAACAACCCCAG AATCGGAGCCCCATTACAACCACCCGTTTACTGATGAATTCTCAAAGTGATTCTGGTGCTCAATCTCCCATTTCATTGAAGCTTGAAGGTTCATCAACCA TGGATTCACAGAGACAGAGAGGAAATGAGTCTACAACCAGTCAACATTTGGTGGCTTTGGGAGAGCTTGAGTTTAGAAAAGCCTTCCTTATCCTAAGTTA CCTTGGAGGAAAAAATTTGGAAGAGGTGGTATCCGTTGATCAAATTAGGGGGTATAAGGATTTGCCAATGAGAACATTTGAGTCAAAAATTTGGGAAGCT TTTGGATGTAGGAGAGATTATATAAAGGAAGAAGATCGTGTCAAGTATCTTGATTGGGATTCTGGGAAAACACACATCTATCACTGTCATGTGGATCCGG ATGGAAGTTATAGGTTCAAGGGACCTTACCTCTCCAAGCTGAGAAATGTCCTGCAAAGGACCTTGGGAGATGACAATATCTTGATGGTAAAGTTTGGGGA GGTAAAAGATGATAGAGATTCAGGGAGCAGGTCTCTGGATGATTATTTTTCCAAGTACAACAAGGTTCTTGGAGAAGGGATTCATGTTGGTTTGCGTTGT TACCGCTTTTTTGTGTTTAAAGATGGAGGCAAAGAAGAAAAAAAGAAAGACCCAACCACTTCTCCTGTCAAGTGTTTTTTTGTCCGCATGGAGTCTGTTG CATCGATTGATAATCAAGATAATATTTTGAGCGGGAAAACAATCCGTCAAGCTAGATCTGTTTTTATGCATGTGGACAATTTGTCTAGTTTGTCGAACTA TATGGCTAGGTTTTCGCTGATTTTGTCAAAGACCATGAATCTGGAAGTTGATTTATCCTGTGTAGATATCAAGACAATAGCTGATGAACCATGCCGGGAT AAAGATGGTAATGTTGTTTACGGTACAGATGGGAAACCTCTTATACATACAGATGGAACTGGGTTTATATCGCATGATTTGGCTTTGAAATGCCCAAAGA ATCAATTCAAAGGAACTTGCCTCCGAGCTTCCAATATTGAGAGATTAAATGTTCATAATGAAGTCATGGAGCAATATCCAGAATGTCGCAATGGGGATCC ACCTTTGCTGATCCAGTTTCGTCTCTTCAATAATGGTAGAGCTGTCAAGGGAACTTTCCTTGTGAATAAGAAGCTTACTCATCAAACTCTGCACATAAGG CCTTCTATGATTAAGGTTGAGACGGATCCAAAACTATCAAGTACTTTTTCAAAAAATTCATTGGAGATAGTTGGAACCAGCTCTCGACCAAAGAAAACGT TCCTTTCAAAGAATTTAATTGCACTTCTTAGCTATGGTGGTGTTCCAGAAGAGTTTTTTATGGGAATAGTGAATAATGCTCTGGAAGATGCCCATGGCAT TCTCTCAAACAAAAATGCAGCTCTACGAGTTGCACTTAATTATGGGGATATGGATGATAACATTGTGGCAACAATGATTGGCTGTGGGATTCCGCTAGAA GAACCATATTTGCAATGTCGTTTGTCAATACTGATGAAGGAAGAAAAGAAGAGTCTGAAAGGAGGAAAAATACCTGTGCCTGAATCATATTATTTGATGG GGACAGCCGATCCAACTGGACTCTTGGAGAGTGATGAAGTTTGCATAATACTAGATTGTGGACAGATTTCAGGGGAGGTATTAATCTATCGGAATCCAGG TTTACATTTTGGAGATATACATATTTTAAAGGCTACATATGTAAGGGAGTTGGAAGATTTTGTTGGAAATGCTAAGTATGCTATATTTTTCCCATGCAAA GGACCACGGTCTTTGGCAGATGAGATGTCAGGTGGTGATTTTGATGGTGACATGTTTTTTGTGTCAAGAAATCCTCAGCTTCTGGAAACCTTTAAACAAA CGGAACCTTGGACACCTTCTACTTCAACCCCTAATGTGCCTAACAGAAAACCAAGTGAATTCTCTGATGAGGAGTTGGAGGTTGAGCTTTTCAAACTATT TTTGAGGAACAGGTTTCAGCCAAGTTCCACTGTAGGGGTGGCAGCGGATAGCTGGCTGGCAATGATGGACCGGCTTCTAACATTGGGAAATGATTGTGCA GAAGAGATAGTTTGTATGAAAGAAAATATCAATCTGTTGATTGATATATACTATGATGCTCTAGATGCTCCAAAGAAAGGTGGAAGAAGGATTGAAGTTC CAGAAGGCTTGAAGGCAGAGCTGTTCCCACATTTTATGGGAAAAAACGAAAAGAAAACCTATCGATCTACTTCCATATTGGGAAAAATTTATGATAAAGT GAAAGCATATGAAGACATGGATCTGTCATCAAATGATGTTTGGAAACTCCCTTGCTTTGACGATGAAGTTCACGAGCTGTACCTTGTGAAGTGGAAGGAA CTCTACGGTCAATACAGGAAGGAGATGCGCAATGCTCTAAAGGCTGGTGAAGAGAGCAACGACAAGGCTAATGAAGTCATAAGAAAATACAAGGAGTTCT TATATGAAGCTGCGGAATTTAATTTGAGCAAACGAAGAGATGAGGAAATCTTTGAGGAGGCCATGGCTCTATATCAGGTTTCTTACAACCATGCCAAGAG CCAAGGAGTTGTCGGAAATTGCAGCTTTGCCTGGAGAGTCGCAGGTTTAGCTCTTTGCACGCTCTACGTTTTGAAGAATCAGGGTGAAAGACCTATGATA TGTTCACCATCTGCTCTGAAAGGGATTTTGTAG
AA sequence Show only first row Show all	>Potri.007G081300.1 pacid=42765482 polypeptide=Potri.007G081300.1.p locus=Potri.007G081300 ID=Potri.007G081300.1.v4.1 annot-version=v4.1 MAEINNDKIVPLPCVVEELIAKICREQNRRPLETNTRLTLASLGEEVALNILWRISGQEIRKSFDGFVLHLAKQFSPNINASSSSPNIHSSLSPSPQQPQ NRSPITTTRLLMNSQSDSGAQSPISLKLEGSSTMDSQRQRGNESTTSQHLVALGELEFRKAFLILSYLGGKNLEEVVSVDQIRGYKDLPMRTFESKIWEA FGCRRDYIKEEDRVKYLDWDSGKTHIYHCHVDPDGSYRFKGPYLSKLRNVLQRTLGDDNILMVKFGEVKDDRDSGSRSLDDYFSKYNKVLGEGIHVGLRC YRFFVFKDGGKEEKKKDPTTSPVKCFFVRMESVASIDNQDNILSGKTIRQARSVFMHVDNLSSLSNYMARFSLILSKTMNLEVDLSCVDIKTIADEPCRD KDGNVVYGTDGKPLIHTDGTGFISHDLALKCPKNQFKGTCLRASNIERLNVHNEVMEQYPECRNGDPPLLIQFRLFNNGRAVKGTFLVNKKLTHQTLHIR PSMIKVETDPKLSSTFSKNSLEIVGTSSRPKKTFLSKNLIALLSYGGVPEEFFMGIVNNALEDAHGILSNKNAALRVALNYGDMDDNIVATMIGCGIPLE EPYLQCRLSILMKEEKKSLKGGKIPVPESYYLMGTADPTGLLESDEVCIILDCGQISGEVLIYRNPGLHFGDIHILKATYVRELEDFVGNAKYAIFFPCK GPRSLADEMSGGDFDGDMFFVSRNPQLLETFKQTEPWTPSTSTPNVPNRKPSEFSDEELEVELFKLFLRNRFQPSSTVGVAADSWLAMMDRLLTLGNDCA EEIVCMKENINLLIDIYYDALDAPKKGGRRIEVPEGLKAELFPHFMGKNEKKTYRSTSILGKIYDKVKAYEDMDLSSNDVWKLPCFDDEVHELYLVKWKE LYGQYRKEMRNALKAGEESNDKANEVIRKYKEFLYEAAEFNLSKRRDEEIFEEAMALYQVSYNHAKSQGVVGNCSFAWRVAGLALCTLYVLKNQGERPMI CSPSALKGIL

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT2G19930			RNA-dependent RNA polymerase f...		Potri.007G081300 [exp]	0	1
AT1G02960			unknown protein		Potri.002G208058 [exp]	8.36	0.8125
AT2G45880	BZR	BAM7, BMY4	BETA-AMYLASE 4, beta-amylase 7...		Potri.001G372500 [exp]	9.53	0.8079
					Potri.003G039551 [exp]	9.94	0.7930
AT3G44370			Membrane insertion protein, Ox...		Potri.009G121800 [exp]	10.39	0.7767
AT3G18520		HDA15, ATHDA15	histone deacetylase 15 (.1.2)		Potri.012G060400 [exp]	11.83	0.7883
AT2G22600			RNA-binding KH domain-containi...		Potri.007G012000 [exp]	12.36	0.7952
AT1G58210		EMB1674	EMBRYO DEFECTIVE 1674, kinase ...		Potri.017G036100 [exp]	12.40	0.8194
AT3G07660			Kinase-related protein of unkn...		Potri.011G079800 [exp]	13.56	0.7577
AT3G62930			Thioredoxin superfamily protei...		Potri.014G133700 [exp]	14.28	0.6184
AT4G28760			Protein of unknown function (D...		Potri.014G194600 [exp]	15.58	0.7528

Compare expression of checked genes

Potri.007G081300 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.