Plant FIBer expression Database

DPE1.1 (Potri.007G081400) [POPLAR]


External link
JGI Phytozome v13PopgenieAspWood                  
Symbol DPE1.1
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT5G64860 849 / 0 DPE1 disproportionating enzyme (.1)
AT2G40840 111 / 3e-25 DPE2 disproportionating enzyme 2 (.1)
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.006G031700
[exp]
114 / 2e-26 AT2G40840 1492 / 0.0 disproportionating enzyme 2 (.1)
Potri.016G028900
[exp]
113 / 6e-26 AT2G40840 1481 / 0.0 disproportionating enzyme 2 (.1)
Flax homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10035845
[exp]
840 / 0 AT5G64860 811 / 0.0 disproportionating enzyme (.1)
Lus10036626
[exp]
507 / 2e-175 AT5G64860 482 / 1e-165 disproportionating enzyme (.1)
Lus10036628
[exp]
127 / 2e-34 AT5G64860 136 / 3e-38 disproportionating enzyme (.1)
Lus10031010
[exp]
106 / 9e-24 AT2G40840 1063 / 0.0 disproportionating enzyme 2 (.1)
Lus10035408
[exp]
86 / 3e-17 AT2G40840 1078 / 0.0 disproportionating enzyme 2 (.1)
PFAM info
Clan ID Clan name Pfam ID Pfam name Pfam description
CL0058 Glyco_hydro_tim PF02446 Glyco_hydro_77 4-alpha-glucanotransferase
Representative CDS sequence
>Potri.007G081400.1 pacid=42766419 polypeptide=Potri.007G081400.1.p locus=Potri.007G081400 ID=Potri.007G081400.1.v4.1 annot-version=v4.1
ATGGCAGTCCTCAACTCACTCTCACTTCTTTTCTCTCCAAAACTCACTCACTCTTCTTCAATTCCTTTCCCTCTCTTGACCTCCCAATCCAACCCTCTAT
CTTTCAATCTCACTTCCAAATCCGTCGCCCTATCCGCCACTCCTTCTCACTTTTCAGTCGCGGTTGGCGAGGACTTGCCTGTAGATTACGGCGAGTGGTT
TCCTAAACGTGATCCTGGTGATCGCAGGAGAGCTGGCATTTTGCTTCACCCGACCTCGTTTAGAGGACCCTACGGTATTGGAGACCTTGGTGACGAGGCC
TTTCGGTTTATCGATTGGCTTCATGATGCTGGTTGCTCTGTTTGGCAGGTTTTACCTCTTGTTCCACCGGGAAGGAAGGCGAATGAAGAAGGATCACCTT
ACTCCGGCCAGGATGCAAATTGTGGTAACACGCTTTTGATTTCACTTGAAGATCTTGTGAAAGATGGATTATTGACAGAAGATGAGCTTCCTAGACCAAC
AGATGCTGATCATGTGGACTTCTCTGTTGTTGCTGACTTAAAGGATCCGTTGATAACTAAGGCTGCAGAGAGGCTTATTTTAAGCGACGGTGAACTTAAA
AGTCAGCTTGAAGATTTTCAGAGAAACCCGGACATTTCAAGTTGGCTTGAAGATGCAGCTTATTTTGCTGCTATTGACGATTCCTTAAATACACTTAATT
GGTATGAGTGGCCTGAACCTTTAAAAAATCGCCATCTTGCAGCCTTGGAGGAAGTATACCAGAGTAAAAAGGATTTTATAGACATATTCATTGCACAACA
GTTCTTGTTCCAAAGGCAATGGAAGAAAGTTCGCAGCTATGCACGGGAGAAGGGAATTAGTATAATGGGTGACATGCCTATATATGTAGGGTATCACAGC
GCTGATGTTTGGGCAAATAAGAAACATTTTTTACTGAACAGGAATGGTTTTCCTCTTCTAGTTAGTGGTGTCCCCCCTGATGCCTTCAGTGAAACTGGAC
AGTTGTGGGACAGTCCTTTATATGACTGGAAAGCCATGGAGAAAGATGGATATTCATGGTGGATACGTCGCATGAGGCGGGCTCAAGATCTGTTTGAAGA
ATTCAGAATAGATCATTTTAGAGGTTTTGCAGGCTTTTGGGCTGTTCCTTCAGAAGCAAAAGTTGCAATGGTCGGAAACTGGAAGGCAGGACCTGGAAAA
TCCCTATTTGATGCAATCTCTAGAGCTGTTGGGAAGATCAATATAATAGCAGAAGATCTGGGAATCATCACTGAAGATGTAGTGCACCTTAGGAAATCCA
TCGGTGCTCCTGGAATGGCTGTCCTTCAGTTTGGTTTTGGAAGTGATGCAGCTAACCCTCATTTGCCTCATAATCACGAGCCCAATCAAGTTGTGTACAC
TGGAACTCATGATAATGACACGATTCGAGGTTGGTGGGATGTTTTGAAACAAGAAGAGAAATCAAATGTCCAGAAGTATCTTTTGATTCATGAAGAAAAT
GATATCCCATGGGAACTCATTCAAGCTGCCCTTTCATCAGTGGCCCAAACTGCAGTCATACCTATGCAAGATATTCTTGGATTGGGGAATTCTGCCAGAA
TGAATATTCCGGCTACTCAGTTTGGAAACTGGAGGTGGAGGATACCTAGTTCCATGAGCTTTGATCACTTGGAGGATGAAGCAACACGACTCAAGGATAT
ACTCTCAACATATGGGCGGTTGTAG
AA sequence
>Potri.007G081400.1 pacid=42766419 polypeptide=Potri.007G081400.1.p locus=Potri.007G081400 ID=Potri.007G081400.1.v4.1 annot-version=v4.1
MAVLNSLSLLFSPKLTHSSSIPFPLLTSQSNPLSFNLTSKSVALSATPSHFSVAVGEDLPVDYGEWFPKRDPGDRRRAGILLHPTSFRGPYGIGDLGDEA
FRFIDWLHDAGCSVWQVLPLVPPGRKANEEGSPYSGQDANCGNTLLISLEDLVKDGLLTEDELPRPTDADHVDFSVVADLKDPLITKAAERLILSDGELK
SQLEDFQRNPDISSWLEDAAYFAAIDDSLNTLNWYEWPEPLKNRHLAALEEVYQSKKDFIDIFIAQQFLFQRQWKKVRSYAREKGISIMGDMPIYVGYHS
ADVWANKKHFLLNRNGFPLLVSGVPPDAFSETGQLWDSPLYDWKAMEKDGYSWWIRRMRRAQDLFEEFRIDHFRGFAGFWAVPSEAKVAMVGNWKAGPGK
SLFDAISRAVGKINIIAEDLGIITEDVVHLRKSIGAPGMAVLQFGFGSDAANPHLPHNHEPNQVVYTGTHDNDTIRGWWDVLKQEEKSNVQKYLLIHEEN
DIPWELIQAALSSVAQTAVIPMQDILGLGNSARMNIPATQFGNWRWRIPSSMSFDHLEDEATRLKDILSTYGRL

DESeq2's median of ratios [POPLAR]

Mapped by: Order by: Show schematic diagram

Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol NWA:WTNWB:WTNWA:OE-ARK2NWB:OE-ARK2NWA:miRNA-ARK2NWB:miRNA-ARK2NW 0hrWT H20WT-NWTUA1dEY NWTUA1dEY+TUB15 NWTUA1dY+TUB9 NWPde NWNWA:WT GANWBWT GATW:WTTW:WT GANWA:OE-ARK2 GANWB:OE-ARK2 GATW:OE-ARK2TW:OE-ARK2 GANWA:miRNA-ARK2 GANWB:miRNA-ARK2 GATW:miRNA-ARK2TW:miRNA-ARK2 GATW 2hrTW 8hrTW 24hrTW 48hrTW 96hrTW 336hrWT ACC35S::etr1-1 H2035S::etr1-1 ACCLMX5::etr1-1 H20LMX5::etr1-1 ACCWT-TWTUA1dEY TWTUA1dEY+TUB15 TWTUA1dY+TUB9 TWPde TWOW:WTOW:WT GAOW:OE-ARK2OW:OE-ARK2 GAOW:miRNA-ARK2OW:miRNA-ARK2 GAOW 2hrOW 8hrOW 24hrOW 48hrOW 96hrOW 336hrRoot CTRRoot LongColdRoot LongDrougtRoot LongHeatRoot LongSaltRoot ShortColdRoot ShortDrougtRoot ShortHeatRoot ShortSaltPtr rootLeaf CTRLeaf LongColdLeaf LongDrougtLeaf LongHeatLeaf LongSaltLeaf ShortColdLeaf ShortDrougtLeaf ShortHeatLeaf ShortSaltPtr leafStem CTRStem LongColdStem LongDrougtStem LongHeatStem LongSaltStem ShortColdStem ShortDrougtStem ShortHeatStem ShortSaltPtr shootPtr xylemPtr phloemPtr fiberPtr vesselPtr fiber vessel ray
AT5G64860 DPE1 disproportionating enzyme (.1) Potri.007G081400
[exp]
0 1 DPE1.1
AT4G09970 unknown protein Potri.013G102300
[exp]
2.44 0.8174
AT4G23980 ARF ARF9 auxin response factor 9 (.1.2) Potri.014G100100
[exp]
4.00 0.7517
AT1G09850 XBCP3 xylem bark cysteine peptidase ... Potri.011G066800
[exp]
5.47 0.8275
AT1G11820 O-Glycosyl hydrolases family 1... Potri.011G006100
[exp]
7.34 0.7962
AT1G80530 Major facilitator superfamily ... Potri.003G012300
[exp]
7.93 0.7269
AT5G57970 DNA glycosylase superfamily pr... Potri.018G106900
[exp]
8.48 0.7504
Potri.014G194201
[exp]
9.16 0.7624
AT4G33410 ATSPPL1 SIGNAL PEPTIDE PEPTIDASE-LIKE ... Potri.015G145600
[exp]
10.48 0.6816
AT3G50810 Uncharacterised protein family... Potri.009G110200
[exp]
10.67 0.7337
AT2G28900 OEP16, ATOEP16-... outer envelope protein 16, OUT... Potri.001G239900
[exp]
12.00 0.7366

Potri.007G081400 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.