Plant FIBer expression Database

Potri.007G081750 [POPLAR]


External link
JGI Phytozome v13PopgenieAspWood                  
Symbol
Arabidopsis homologues

No hit found

Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Flax homologues

No hit found
PFAM info
Representative CDS sequence
>Potri.007G081750.1 pacid=42766466 polypeptide=Potri.007G081750.1.p locus=Potri.007G081750 ID=Potri.007G081750.1.v4.1 annot-version=v4.1
ATGGGTGGGGAAATAGTTGACAAGCAATGGAACACGAATTTTGAAGTCCAGGTCCAGTTCCTTCATAGCTTACATGATGGTAACCAATGTGCTGATTTCT
TAGTGCGTACTGGTTCTTCTCAGACTTCCACTTGCGAACTTTGGTTTCATCATCTTCCTGGCATGGATCAGGATGAGCTTCTCCTAGCTGCTGATATAAT
GGGAATTGCCCTTCTCTCAGTGTTTGTTTTCGTTTATACCATCTTTTGCACACAAAAAGAAGGGGGTCCCTTTTGCAGAACTTTGAAGTTTGATTAA
AA sequence
>Potri.007G081750.1 pacid=42766466 polypeptide=Potri.007G081750.1.p locus=Potri.007G081750 ID=Potri.007G081750.1.v4.1 annot-version=v4.1
MGGEIVDKQWNTNFEVQVQFLHSLHDGNQCADFLVRTGSSQTSTCELWFHHLPGMDQDELLLAADIMGIALLSVFVFVYTIFCTQKEGGPFCRTLKFD

DESeq2's median of ratios [POPLAR]

Mapped by: Order by: Show schematic diagram

Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol NWA:WTNWB:WTNWA:OE-ARK2NWB:OE-ARK2NWA:miRNA-ARK2NWB:miRNA-ARK2NW 0hrWT H20WT-NWTUA1dEY NWTUA1dEY+TUB15 NWTUA1dY+TUB9 NWPde NWNWA:WT GANWBWT GATW:WTTW:WT GANWA:OE-ARK2 GANWB:OE-ARK2 GATW:OE-ARK2TW:OE-ARK2 GANWA:miRNA-ARK2 GANWB:miRNA-ARK2 GATW:miRNA-ARK2TW:miRNA-ARK2 GATW 2hrTW 8hrTW 24hrTW 48hrTW 96hrTW 336hrWT ACC35S::etr1-1 H2035S::etr1-1 ACCLMX5::etr1-1 H20LMX5::etr1-1 ACCWT-TWTUA1dEY TWTUA1dEY+TUB15 TWTUA1dY+TUB9 TWPde TWOW:WTOW:WT GAOW:OE-ARK2OW:OE-ARK2 GAOW:miRNA-ARK2OW:miRNA-ARK2 GAOW 2hrOW 8hrOW 24hrOW 48hrOW 96hrOW 336hrRoot CTRRoot LongColdRoot LongDrougtRoot LongHeatRoot LongSaltRoot ShortColdRoot ShortDrougtRoot ShortHeatRoot ShortSaltPtr rootLeaf CTRLeaf LongColdLeaf LongDrougtLeaf LongHeatLeaf LongSaltLeaf ShortColdLeaf ShortDrougtLeaf ShortHeatLeaf ShortSaltPtr leafStem CTRStem LongColdStem LongDrougtStem LongHeatStem LongSaltStem ShortColdStem ShortDrougtStem ShortHeatStem ShortSaltPtr shootPtr xylemPtr phloemPtr fiberPtr vesselPtr fiber vessel ray
Potri.007G081750
[exp]
0 1
AT4G14110 FUS7, EMB143, C... FUSCA 7, EMBRYO DEFECTIVE 143,... Potri.003G022001
[exp]
12.52 0.6805
AT1G59610 DRP2B, CF1, ADL... Dynamin related protein 2B, dy... Potri.013G096701
[exp]
12.96 0.6575
AT1G10290 DRP2A, ADL6 DYNAMIN-RELATED PROTEIN 2A, dy... Potri.013G096775
[exp]
24.18 0.6153
AT3G06340 DNAJ heat shock N-terminal dom... Potri.008G196201
[exp]
24.65 0.5957
AT4G14590 EMB2739 embryo defective 2739 (.1) Potri.001G277200
[exp]
25.47 0.6070
AT3G12680 C3HZnF HUA1 ENHANCER OF AG-4 1, floral hom... Potri.008G080300
[exp]
39.33 0.5945 Pt-HUA1.1
AT2G16030 S-adenosyl-L-methionine-depend... Potri.019G125300
[exp]
41.35 0.5510
AT4G37270 ATHMA1, HMA1 ARABIDOPSIS THALIANA HEAVY MET... Potri.005G142732
[exp]
51.96 0.5969
AT5G05590 PAI2 phosphoribosylanthranilate iso... Potri.014G188400
[exp]
58.14 0.5051
AT1G55880 Pyridoxal-5'-phosphate-depende... Potri.001G367000
[exp]
64.49 0.5725

Potri.007G081750 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.