Plant FIBer expression Database

Potri.007G081900 [POPLAR]


External link
JGI Phytozome v13PopgenieAspWood                  
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT2G22010 1712 / 0 RKP related to KPC1 (.1.2)
AT1G35470 53 / 1e-06 SPla/RYanodine receptor (SPRY) domain-containing protein (.1), SPla/RYanodine receptor (SPRY) domain-containing protein (.2)
AT4G22250 47 / 4e-05 RING/U-box superfamily protein (.1)
AT4G03965 47 / 4e-05 RING/U-box superfamily protein (.1)
AT4G09250 46 / 0.0001 SPla/RYanodine receptor (SPRY) domain-containing protein (.1)
AT4G09310 46 / 0.0001 SPla/RYanodine receptor (SPRY) domain-containing protein (.1)
AT4G09200 46 / 0.0001 SPla/RYanodine receptor (SPRY) domain-containing protein (.1)
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.005G083800
[exp]
2275 / 0 AT2G22010 1726 / 0.0 related to KPC1 (.1.2)
Potri.004G003101
[exp]
52 / 1e-06 AT4G03965 135 / 3e-39 RING/U-box superfamily protein (.1)
Potri.002G224200
[exp]
50 / 2e-06 AT4G03965 116 / 7e-33 RING/U-box superfamily protein (.1)
Potri.013G108400
[exp]
48 / 4e-05 AT1G35470 607 / 0.0 SPla/RYanodine receptor (SPRY) domain-containing protein (.1), SPla/RYanodine receptor (SPRY) domain-containing protein (.2)
Flax homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10035857
[exp]
1831 / 0 AT2G22010 1667 / 0.0 related to KPC1 (.1.2)
Lus10016817
[exp]
1521 / 0 AT2G22010 1406 / 0.0 related to KPC1 (.1.2)
Lus10009451
[exp]
51 / 5e-06 AT1G35470 601 / 0.0 SPla/RYanodine receptor (SPRY) domain-containing protein (.1), SPla/RYanodine receptor (SPRY) domain-containing protein (.2)
Lus10009316
[exp]
50 / 1e-05 AT1G35470 197 / 7e-59 SPla/RYanodine receptor (SPRY) domain-containing protein (.1), SPla/RYanodine receptor (SPRY) domain-containing protein (.2)
Lus10020190
[exp]
46 / 0.0001 AT1G35470 167 / 1e-48 SPla/RYanodine receptor (SPRY) domain-containing protein (.1), SPla/RYanodine receptor (SPRY) domain-containing protein (.2)
PFAM info
Clan ID Clan name Pfam ID Pfam name Pfam description
CL0004 Concanavalin PF00622 SPRY SPRY domain
CL0004 PF10408 Ufd2P_core Ubiquitin elongating factor core
Representative CDS sequence
>Potri.007G081900.1 pacid=42765211 polypeptide=Potri.007G081900.1.p locus=Potri.007G081900 ID=Potri.007G081900.1.v4.1 annot-version=v4.1
ATGGAAGAAGAGGGAAAACGGGTTGGAGGGCTTTCTTCTGGATTGGCTGTTTTATTGAAAGGCGAAGATAGAAAGGAGGATTCGTGGAAAACCCGACTTG
TTTCATCGTGTGATGATTTTGGTAATCAGCCCGTGGAGCGAGCTCTTGAATATATCTTTGGTCTCTCAAACAAATCACTTGGTCCATTGACTGGTCCAGT
TGACACTAAATTAGTTCGCTCTATTTTAAAAAATGAGTTTTCCAAGTTTTGTATCAAATCTGGTGATTTGGTTGATAGTAGAGACGGGATTCATATCAGT
AAAGATGGTTGTGAATCTCAGGTGGTCGGGCTTGAAGAAGTGAGCATCTGTGGTGATATTAGAATCATTAAACACCCTTTGCATGTAGAAAGCTTAGCAA
TGTTCAGTAGTGCTAGGTCCAATGCTTGTGTTTGGAAAGGGAAATGGATGTATGAAGTTCTATTGGAAACTTGTGGTGTACAGCAGCTTGGATGGGCAAC
TCGTTCTTGTCCTTTTACTGATCACAAGGGTGTAGGTGATGCAGATGATTCATATGCATTCGATGGGAAAAGGGTTAGTAAGTGGAACAAGGATGCTGAG
CCATATGGTCAGCCATGGGTTGTTGGTGATGTCATTGGATGTTGCATTAATCTGGATCATGATGAGATATTGTTCTATAGAAATGGTGTATCCCTTGGAG
TGGCCTTTCGTGGTATCCGCAAGATGGGACCTGGATCTGGGTATTACCCAGCAATCTCTCTTTCTCAAGGTGAACTCTGTGAATTAAATTTTGGGGCTCG
TCCCTTCAAGTACCCCATTCAGGGGTTCCTTCCCCTTAAAGCACCTCCTTCCGCAAATCTTTTGGCTAAGCAGTTGCTTCAATGCTTATCAAGGCTGTCA
GATGTGCAAGGTGCGGGATGGGCTGAAAGTTCTTTAGTTGGTAAATTGAGAAGATTGAAGAGGTTTGTGTCACTTGACGAAGTATTTTATCCTGTCTGTC
AAGGGATATGTGAGGAATTCTTCTCTGTTCTTGAGGGAGATTCTGGAAGTACTGAGTTTGTGGCATGGGGTCCACTTCTTTCATTCATGATGGAGGTTTT
CAGAGTGCAAGCACCACATGACTGTTCAGGTCTGGATAAGTTTATTGATGTATTTCTAGAGTTTCAAGAATCACGTCTGATGTTTGAGCATATCATCAAT
GCCCTTTCAAGTGGCTGCAAAACAGCATCTTTGGTTTTAACAGAATGCCCGTACTCAGGATCTTATTCTTATCTTGCAATGGTATGCCATATCTTACAAC
GGAAAGAATTGATGGTTCTCTGGTGGAAGTCAGCTGATTTTGAATTATTGTTTGAAGGTTTTCTATCGCAAAAGAGTCCAAACAAGCAGGACCTTCAATG
CATGATGCCTTCTGTTTGGTGGCCTGGTTCAGGTGATGATATCTCCAATGATGGAAGAAGCATGATGCTGACAACTACAGCTTTATCGGAAGCTATCAAA
AAGATTGAGGAGAAGCATAGGGACCTCTGTCTCTTGGTCATGCAATTTGTACCGCCTACAACACCTGCTCAATTACCTGGCTCAGTGTTGAGGACATTTT
TACAAAATATTCTATTGAAGAATAGAGGAGCAGATTGCAATGCGCCACCTCCTGGAGTTTCAAGCAATTCCGTTCTTATTTCTTTGTACTCAGTTATACT
TCATTTTTTATCCGAAGGATTTGCTATGAGGGACATTTGTGGCTGGTTAAAGAGGTGTGAACCCAATGGTCTTGATGTTGGATTTCTTCACAGAGGTGGT
GAACAAAGTTTCCCTGTAGATATATTTCTCAAAAATGATCCTCATCGAACTGACATTTCTAGACTTGGGGGATCATTTAGTCATATCTCAAAATCCCATC
CTGCACATGATCAAGAAGCAGAAGTAATCCAGTGGGAGGAAGGTTGTATGGATGATGAAGAAACAAGAGTAACACATAAAACCACACCGAAACCATGTTG
TTGTTCAAGTTATGAGATTGAATTGTCAAAAATCTCCAAGCATCAAATTAGATACAACACTAAAGATTCTCGTGTCCATTGTAGTGGTATTCCAGACAGG
TCTGCTTATGTGGCTGCAGAATGCAGTGAAGGAAGTTTGAATGATGAGATAGCCGACAAACCTAGTACAAGTGATCAATCTGAATCTGATTTTGGTTATT
GTCCAGTGCGAGATATTAGGATTGTGCACAGGGAGAGTGATATGTCTTCAGCAACTCTGAGAGAAGAAGAACTTCTAGATACATTGCTATTGCTGTATCA
CATAGGTGTTGCACCAAAGTTTAAGCAGGCATCGTACTACATGTCTCATCAGGCACAGTCAATATCACTCCTGGAAGAAACTGACAAACAAATAAGAGAA
CGTGCTTGTTGTGAGAAATTAAGACGCCTGAAAGAAGCTCGTAATGAATACCGTGAAGAAGTAATGGATTGTGTAAGACATTGTGCATGGTATCGCATCT
CTCTTTTCTCGCAGTGGAAGCAACGAGGAATGTATGCAACATGCATGTGGATAGTCCAACTACTTCTTGTTCTTAGCAGAGTGGATTCCCTATTTATTTA
TATTCCTGAGTTTTATCTTGAAACCCTGGTTGATTGCTTCCATGTGCTGCGCAAGAGTGACCCCCCATTTGTACCCCCTGCAATATTTATTAAGCAAGGA
CTTGCTTCATTTGTAACTTTTGTTGTTTCCCACTTCAATGATCCGAGGATATTGAGTGCTGATCTCAAGGATCTTCTCCTCCAATCTATTTCAGTCCTGG
TACAGTATAAGGAGTATTTGACAGTGTTTGAGAGCAATGAAGCGGCCACACAAAGAATGCCAAAAGCACTATTGTCGGCATTTGACAACAGATCTTGGAT
CTCAGTGACTAACATTCTTTTGCGGTTGTGCAAGGGTTCTCGTTTCAGTTCTTCAAAGCATGGGGAGTCATCGTCATCATCGTCATTTGTTTTCCAGAAC
TTGTTGCGGGAAGCTTGCATCAATGATGAAGAGTTGTTCTCAGCCTTTCTGAATCGACTATTTAATACACTCAGCTGGACGATGACTGAATTCTCTGTAT
CCATTCGGGAAATGCAAGAAAAATACCAGGTTTTGGAGTTTCAGCAAAGAAAATGTGGTGTCATATTTGATCTCTCATGCAACCTTGCAAAGGTTTTGGA
GTTCTATACTCGTGAAATCCCTCAAGCATTCCTATCTGGAACTGAGACGAACCTTCGGAGGCTAACTGAACTGATAGTCTTTATTCTCAACCACGTTACC
TCAACTGCGGATGCCGAGTTTTTTGATCTGTCACTTAGACGACATGGTCATTCTCCAGAAAAAGTAAATCGAGGCATGATATTAGCACCTCTTGTAGGGA
TCATCTTGAATTTGTTGGATGCAAGGGTGGGGACGGAATGTGGACAGCAGAATGATGTTGTGGGTGTTTTTGCAAGCATGGACTGCCCTGATGCTGTGCA
CTGTGGATTCCAGTATCTCTTAGAGTACAACTGGACTAGGTCCGCAAGAGGGGATGCTTACAGTGGAAAACTTCAGCAGCTAGAGAGTTTCTTGAGCCTC
CTTGTTAGCAGGATTGAGTTGCAACAAATTGAAAGAACGAAACATGAGGAAGAGACAGAAGCTGATGATAATACTTGCTGCATTTGTTATTCTTGTAAAG
CAGATGCAAGGTTTGCCCCTTGTTCACATAGGTCCTGCCATGGCTGCATAACCAGGCATCTTTTAAATTGTCATAGATGTTTCTTTTGCAATGCAACAGT
CTTGGAGGTTATCAAGATTGATGAAAGCAGAGCTTAA
AA sequence
>Potri.007G081900.1 pacid=42765211 polypeptide=Potri.007G081900.1.p locus=Potri.007G081900 ID=Potri.007G081900.1.v4.1 annot-version=v4.1
MEEEGKRVGGLSSGLAVLLKGEDRKEDSWKTRLVSSCDDFGNQPVERALEYIFGLSNKSLGPLTGPVDTKLVRSILKNEFSKFCIKSGDLVDSRDGIHIS
KDGCESQVVGLEEVSICGDIRIIKHPLHVESLAMFSSARSNACVWKGKWMYEVLLETCGVQQLGWATRSCPFTDHKGVGDADDSYAFDGKRVSKWNKDAE
PYGQPWVVGDVIGCCINLDHDEILFYRNGVSLGVAFRGIRKMGPGSGYYPAISLSQGELCELNFGARPFKYPIQGFLPLKAPPSANLLAKQLLQCLSRLS
DVQGAGWAESSLVGKLRRLKRFVSLDEVFYPVCQGICEEFFSVLEGDSGSTEFVAWGPLLSFMMEVFRVQAPHDCSGLDKFIDVFLEFQESRLMFEHIIN
ALSSGCKTASLVLTECPYSGSYSYLAMVCHILQRKELMVLWWKSADFELLFEGFLSQKSPNKQDLQCMMPSVWWPGSGDDISNDGRSMMLTTTALSEAIK
KIEEKHRDLCLLVMQFVPPTTPAQLPGSVLRTFLQNILLKNRGADCNAPPPGVSSNSVLISLYSVILHFLSEGFAMRDICGWLKRCEPNGLDVGFLHRGG
EQSFPVDIFLKNDPHRTDISRLGGSFSHISKSHPAHDQEAEVIQWEEGCMDDEETRVTHKTTPKPCCCSSYEIELSKISKHQIRYNTKDSRVHCSGIPDR
SAYVAAECSEGSLNDEIADKPSTSDQSESDFGYCPVRDIRIVHRESDMSSATLREEELLDTLLLLYHIGVAPKFKQASYYMSHQAQSISLLEETDKQIRE
RACCEKLRRLKEARNEYREEVMDCVRHCAWYRISLFSQWKQRGMYATCMWIVQLLLVLSRVDSLFIYIPEFYLETLVDCFHVLRKSDPPFVPPAIFIKQG
LASFVTFVVSHFNDPRILSADLKDLLLQSISVLVQYKEYLTVFESNEAATQRMPKALLSAFDNRSWISVTNILLRLCKGSRFSSSKHGESSSSSSFVFQN
LLREACINDEELFSAFLNRLFNTLSWTMTEFSVSIREMQEKYQVLEFQQRKCGVIFDLSCNLAKVLEFYTREIPQAFLSGTETNLRRLTELIVFILNHVT
STADAEFFDLSLRRHGHSPEKVNRGMILAPLVGIILNLLDARVGTECGQQNDVVGVFASMDCPDAVHCGFQYLLEYNWTRSARGDAYSGKLQQLESFLSL
LVSRIELQQIERTKHEEETEADDNTCCICYSCKADARFAPCSHRSCHGCITRHLLNCHRCFFCNATVLEVIKIDESRA

DESeq2's median of ratios [POPLAR]

Mapped by: Order by: Show schematic diagram

Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol NWA:WTNWB:WTNWA:OE-ARK2NWB:OE-ARK2NWA:miRNA-ARK2NWB:miRNA-ARK2NW 0hrWT H20WT-NWTUA1dEY NWTUA1dEY+TUB15 NWTUA1dY+TUB9 NWPde NWNWA:WT GANWBWT GATW:WTTW:WT GANWA:OE-ARK2 GANWB:OE-ARK2 GATW:OE-ARK2TW:OE-ARK2 GANWA:miRNA-ARK2 GANWB:miRNA-ARK2 GATW:miRNA-ARK2TW:miRNA-ARK2 GATW 2hrTW 8hrTW 24hrTW 48hrTW 96hrTW 336hrWT ACC35S::etr1-1 H2035S::etr1-1 ACCLMX5::etr1-1 H20LMX5::etr1-1 ACCWT-TWTUA1dEY TWTUA1dEY+TUB15 TWTUA1dY+TUB9 TWPde TWOW:WTOW:WT GAOW:OE-ARK2OW:OE-ARK2 GAOW:miRNA-ARK2OW:miRNA-ARK2 GAOW 2hrOW 8hrOW 24hrOW 48hrOW 96hrOW 336hrRoot CTRRoot LongColdRoot LongDrougtRoot LongHeatRoot LongSaltRoot ShortColdRoot ShortDrougtRoot ShortHeatRoot ShortSaltPtr rootLeaf CTRLeaf LongColdLeaf LongDrougtLeaf LongHeatLeaf LongSaltLeaf ShortColdLeaf ShortDrougtLeaf ShortHeatLeaf ShortSaltPtr leafStem CTRStem LongColdStem LongDrougtStem LongHeatStem LongSaltStem ShortColdStem ShortDrougtStem ShortHeatStem ShortSaltPtr shootPtr xylemPtr phloemPtr fiberPtr vesselPtr fiber vessel ray
AT2G22010 RKP related to KPC1 (.1.2) Potri.007G081900
[exp]
0 1
AT2G37650 GRAS SCL9 GRAS family transcription fact... Potri.006G086600
[exp]
1.73 0.8669
AT3G19190 ATATG2 autophagy 2 (.1) Potri.004G141700
[exp]
2.00 0.8844
AT5G02310 PRT6, CER3 proteolysis 6 (.1) Potri.006G085700
[exp]
5.29 0.8580
AT1G09060 Zinc finger, RING-type;Transcr... Potri.013G019000
[exp]
5.47 0.8540
AT5G20490 XI-17, ATXIK, X... MYOSIN XI-17, MYOSIN XI K, Myo... Potri.001G199200
[exp]
11.40 0.8692 MYA1.1
AT2G35050 Protein kinase superfamily pro... Potri.001G123500
[exp]
13.41 0.8426
AT3G47570 Leucine-rich repeat protein ki... Potri.013G020900
[exp]
13.74 0.8157 Pt-RGA.59
AT3G14470 NB-ARC domain-containing disea... Potri.001G029300
[exp]
14.42 0.8230
AT4G30110 ATHMA2, HMA2 ARABIDOPSIS HEAVY METAL ATPASE... Potri.006G076900
[exp]
14.69 0.7825
AT4G34430 ATSWI3D, CHB3 SWITCH/SUCROSE NONFERMENTING 3... Potri.009G114900
[exp]
15.42 0.8230 CHB901,SWI3.4

Potri.007G081900 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.