Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G10020 1132 / 0 Leucine-rich receptor-like protein kinase family protein (.1.2) AT2G27060 313 / 8e-91 Leucine-rich repeat protein kinase family protein (.1) AT4G20940 274 / 2e-77 Leucine-rich receptor-like protein kinase family protein (.1) AT5G01890 179 / 5e-46 Leucine-rich receptor-like protein kinase family protein (.1) AT3G56370 177 / 4e-45 Leucine-rich repeat protein kinase family protein (.1) AT2G25790 174 / 3e-44 Leucine-rich receptor-like protein kinase family protein (.1) AT3G51740 171 / 2e-43 IMK2 inflorescence meristem receptor-like kinase 2 (.1) AT2G26330 167 / 5e-42 QRP1, ER QUANTITATIVE RESISTANCE TO PLECTOSPHAERELLA 1, ERECTA, Leucine-rich receptor-like protein kinase family protein (.1) AT5G07280 163 / 1e-40 EXS, EMS1 EXTRA SPOROGENOUS CELLS, EXCESS MICROSPOROCYTES1, Leucine-rich repeat transmembrane protein kinase (.1) AT5G65710 162 / 2e-40 HSL2 HAESA-like 2 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.005G083000 [exp] 1607 / 0 AT5G10020 1140 / 0.0 Leucine-rich receptor-like protein kinase family protein (.1.2) Potri.004G197500 [exp] 655 / 0 AT2G27060 1053 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Potri.001G465800 [exp] 595 / 0 AT4G20940 915 / 0.0 Leucine-rich receptor-like protein kinase family protein (.1) Potri.011G163700 [exp] 346 / 3e-102 AT4G20940 946 / 0.0 Leucine-rich receptor-like protein kinase family protein (.1) Potri.009G159101 [exp] 194 / 1e-56 AT2G27060 214 / 2e-64 Leucine-rich repeat protein kinase family protein (.1) Potri.016G137000 [exp] 190 / 2e-49 AT3G56370 1116 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Potri.019G058600 [exp] 181 / 1e-46 AT3G56370 1174 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Potri.013G091000 [exp] 180 / 4e-46 AT3G56370 1227 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Potri.010G183400 [exp] 177 / 2e-45 AT3G51740 903 / 0.0 inflorescence meristem receptor-like kinase 2 (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10025541 [exp] 619 / 0 AT2G27060 958 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Lus10026756 [exp] 612 / 0 AT2G27060 961 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Lus10038544 [exp] 353 / 6e-105 AT4G20940 1035 / 0.0 Leucine-rich receptor-like protein kinase family protein (.1) Lus10023260 [exp] 341 / 2e-101 AT4G20940 704 / 0.0 Leucine-rich receptor-like protein kinase family protein (.1) Lus10012225 [exp] 178 / 1e-46 AT3G51740 679 / 0.0 inflorescence meristem receptor-like kinase 2 (.1) Lus10014174 [exp] 179 / 6e-46 AT5G01890 1032 / 0.0 Leucine-rich receptor-like protein kinase family protein (.1) Lus10022738 [exp] 175 / 1e-44 AT5G01890 1035 / 0.0 Leucine-rich receptor-like protein kinase family protein (.1) Lus10014235 [exp] 171 / 1e-43 AT3G51740 933 / 0.0 inflorescence meristem receptor-like kinase 2 (.1) Lus10022679 [exp] 171 / 2e-43 AT3G51740 926 / 0.0 inflorescence meristem receptor-like kinase 2 (.1) Lus10014236 [exp] 170 / 2e-43 AT3G51740 907 / 0.0 inflorescence meristem receptor-like kinase 2 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0016 [poplar] [flax] PKinase PF00069 [poplar] [flax] Pkinase Protein kinase domain CL0022 [poplar] [flax] LRR PF00560 [poplar] [flax] LRR_1 Leucine Rich Repeat CL0022 [poplar] [flax] PF08263 [poplar] [flax] LRRNT_2 Leucine rich repeat N-terminal domain CL0022 [poplar] [flax] LRR PF13855 [poplar] [flax] LRR_8 Leucine rich repeat
Representative CDS sequence Show only first row Show all	>Potri.007G082800.1 pacid=42765935 polypeptide=Potri.007G082800.1.p locus=Potri.007G082800 ID=Potri.007G082800.1.v4.1 annot-version=v4.1 ATGACTCTGTTCACCCTCTTTTCTACTCTCTCCCTACTCTTTCTATCCACTTCCGGGTCGGACCTCCGATCCTTACTCGAATTCAAAAAAGGTATTCTAT ACGACCCACTTGACAAAATCTTCTCTAAATGGGACCCCTCTTCTATACCCGACCCTAATTCCTGCCCCAATTCATGGCCCGGTATCTCCTGCGACCCCAA TTCAGATTCCGTCATTGCTATAACCCTTGACCACCTTAGTCTCTCCGGCAACTTAAAGTTCTCTACTTTACTAGACCTTAAGTCACTGCAGAATATTTCA CTTTCGGGTAATAATTTTACGGGTCGGATTGTACCTGCATTGGGATCCATGAGCTCGTTACAGTACTTGGATCTGTCTAATAACAATTTTTCAGGTCCGA TCCCGGGTCGGATCGTGGAGTTGTGGAATTTGAAGTATTTGAACTTGTCAATGAATGGTTTTGAAGGCAGGTTTCCGGTCGGGTCACCAGTTGGGTTTAG GAATTTGCAGCAATTGAGGGTTTTGGATTTGAGTTGTAATAGTTTTTGGGGCGATATTAGTGGGGTTTTAAGTGAATTGATTAATTTAGAAAGAGTGGAT TTGAGTGATAATGGGTTTTTTGGTGGGTTCAGTGAGATAAGTGTAGAGAATGTGTCAGGTTTGGCTAATACAGTGCATTTTGTGAATTTGAGCAAGAATA GATTGAATAGTGGGTTTTTCAAAGCAGAGGTAATTGCGTTGTTTAGGAATTTGGAGGTTTTGGATTTGGGGGATAATGTGATTAATGGAGAGTTGCCTTC ATTTGGGTCTTTGACGAATTTGAAGGTTTTGAGGCTGGGGAATAATCAGCTTTTTGGAGGTATACCCGAGGAATTGATCAACGGGTCGATACCGATTGAA GAACTGGATCTTAGTGGCAATGGATTTACAGGTTCTGTTCATGGAACTCGCTCCACAACTTTGAACATTTTGAATCTTTCTTCAAATGGTTTAACAGGTA CCTTGCCCACTTTTCTTCAAAGATGTTCAGTAGTGGATTTGAGTGGAAATATGATCACTGGTGACCTGTCTGTCATGCAACAATGGGGAGCCAGTGTAGA GGTCCTTGATTTGAGTTCAAACCAGTTATCTGGAAGCTTGCCAAACTTGACTTGGTTTGTGAGGTTAAGTGAACTTAATCTTAGGAATAATTCCCTAGAC GGCAATTTGCCTGCTCAATTGGGGGACCTTTCAACATCGTCTTCAGTTGACCTCAGCTTAAATCAATTCAATGGGCCCATTCCAGGTGGTTTTTTTACTT CATTGACCTTGATGAACCTGAATCTTTCAGGAAATCGGTTTTCAGGGCCAATTCCATTTCAAGATTCAGGTGCTGGGGAATTATTAGTTTTACCTTCTTA TCCATTGATGGAGTCTCTTGATCTCTCTCAAAATTCATTATCTGGTATATTGCCTTCTGGCATAGGCAACTTTGCCAATCTCAGATCACTGAATCTTTCA AATAATAACTTATCAGGACAGCTGCCAATTCAATTGAGCAAACTAACCCACTTGCAGTACCTTGATTTATCTGCCAACAGATTTCAGGGTAAAATCCCTG ACAAGCTTCCATCCAGTCTGATTGGATTGAACATGTCTAATAATGATCTCGCTGGAAATATTTCACTGAACTTGAGAAATAAATTTGATATTTCTTCATT TCGTCCTGGGAATCCCTTATTAATCATCCCAAATACCGGGGTTGAGCCATCAACAAATTCTGTTCCAGATCAGATTTCCGTACATGGTAAAAATCACAGT TCAAAGCGTAATATTACAATAGCAGTAATTGTTGCTACAGTTGGGACTGCTGCAATGATAGCTTTTGTTTTACTGGCGTATCAGCGGGCTCAACGAAAAG AATTTCATGGCAGAAGTGATTTTAGTGGCCAAACAACAAGGGAGGATGCTAAGCAAGGAAGATCTTCCCAAACTTCCCTTTTTAATTTCCACTCGAATGC TCACCGCCCTCCAACTTCATTGAGTTTTTCAAACGATCACTTGCTTACTGCAAATTCAAGGTCGTTATCGGGGCAGGCAGAATTTGAAACTGAAATCGTT GAGCATGGTTTGCCTGAAGGAATGGCAGCTAGTTCATCTTCAATTCCTAATTTGCTAGATGACCATCCCACAACATCTGGAAAGAAGTCCTCCCCGGGTT CCCCATTATCTTCCTCACCTCGTTTTGTCGAGCCTACAAAATTGGATGTCTATTCACCAGACAGGTTGGCTGGGGAACTGTCCTTCCTTGACAGTTCACT TGCATTTACTGCAGAGGAGTTATCTCGAGCCCCAGCTGAAGTTCTTGGCAGAAGCAGCCATGGAACTTTATATAAGGCTACTCTGGATAGTGGACATATG CTGACTGTGAAGTGGTTGCGGGTTGGACTAGTCAAGCATAAGAAAGAATTTGCCAAGGAAGTTAAAAAAATAGGCTCTATAAGACACCAAAATATTGTTC CACTGCGAGCATTTTATTGGGGTCCTAGAGAGCAAGAGAGACTTCTTTTAGCTGACTATATCCAGGGTGATAGCTTGGCCCTACATCTATATGAAACAAC ACCTCGGAGGTACTCCTTGTTGTCATTCAGCCAAAGACTGAAAGTTGCTGTTGATGTTGCTTGTTGTCTACTGTATCTTCATGATAGAGGCATGCTCCAT GGAAATCTAAAGCCAACAAATATAATCCTGGAAGGTTCTGATTACAATGCACGCCTCACTGATTGTGGACTTCATTGTTTGATGACCCCAGCTGGCATTG CAGAGCAGATACTAAATCTAGGAGCACTAGGGTACCGGGCTCCAGAACTTGATAATGCATCTAAACCTGCACCTTCATTCAAGGCTGATGTGTATGCATT TGGAGTTATCCTGATGGAATTGTTAACCAGAAGAAGTGCTGGGGACATAATATCAGGTCAATCCGGAGCAGTCGACCTTACAGATTGGGTTCGGTTGTGT GATCAAGAAGGCAGACAAATGGACTGTATTGATAGAGATATTGCAGGTGGGGAAGAACCAACGAAGGCAATGGATGATTTGCTTGCCATATCGCTCAGGT GCATTCTCCCTCTAAATGAGAGGCCTAACATCAGACAAGTCTTTGATGATCTCTGTTCTATATCTGTTTGA
AA sequence Show only first row Show all	>Potri.007G082800.1 pacid=42765935 polypeptide=Potri.007G082800.1.p locus=Potri.007G082800 ID=Potri.007G082800.1.v4.1 annot-version=v4.1 MTLFTLFSTLSLLFLSTSGSDLRSLLEFKKGILYDPLDKIFSKWDPSSIPDPNSCPNSWPGISCDPNSDSVIAITLDHLSLSGNLKFSTLLDLKSLQNIS LSGNNFTGRIVPALGSMSSLQYLDLSNNNFSGPIPGRIVELWNLKYLNLSMNGFEGRFPVGSPVGFRNLQQLRVLDLSCNSFWGDISGVLSELINLERVD LSDNGFFGGFSEISVENVSGLANTVHFVNLSKNRLNSGFFKAEVIALFRNLEVLDLGDNVINGELPSFGSLTNLKVLRLGNNQLFGGIPEELINGSIPIE ELDLSGNGFTGSVHGTRSTTLNILNLSSNGLTGTLPTFLQRCSVVDLSGNMITGDLSVMQQWGASVEVLDLSSNQLSGSLPNLTWFVRLSELNLRNNSLD GNLPAQLGDLSTSSSVDLSLNQFNGPIPGGFFTSLTLMNLNLSGNRFSGPIPFQDSGAGELLVLPSYPLMESLDLSQNSLSGILPSGIGNFANLRSLNLS NNNLSGQLPIQLSKLTHLQYLDLSANRFQGKIPDKLPSSLIGLNMSNNDLAGNISLNLRNKFDISSFRPGNPLLIIPNTGVEPSTNSVPDQISVHGKNHS SKRNITIAVIVATVGTAAMIAFVLLAYQRAQRKEFHGRSDFSGQTTREDAKQGRSSQTSLFNFHSNAHRPPTSLSFSNDHLLTANSRSLSGQAEFETEIV EHGLPEGMAASSSSIPNLLDDHPTTSGKKSSPGSPLSSSPRFVEPTKLDVYSPDRLAGELSFLDSSLAFTAEELSRAPAEVLGRSSHGTLYKATLDSGHM LTVKWLRVGLVKHKKEFAKEVKKIGSIRHQNIVPLRAFYWGPREQERLLLADYIQGDSLALHLYETTPRRYSLLSFSQRLKVAVDVACCLLYLHDRGMLH GNLKPTNIILEGSDYNARLTDCGLHCLMTPAGIAEQILNLGALGYRAPELDNASKPAPSFKADVYAFGVILMELLTRRSAGDIISGQSGAVDLTDWVRLC DQEGRQMDCIDRDIAGGEEPTKAMDDLLAISLRCILPLNERPNIRQVFDDLCSISV

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G10020			Leucine-rich receptor-like pro...		Potri.007G082800 [exp]	0	1
AT5G10020			Leucine-rich receptor-like pro...		Potri.005G083000 [exp]	3.00	0.7922
AT3G07340	bHLH	bHLH062	basic helix-loop-helix (bHLH) ...		Potri.002G248500 [exp]	3.87	0.7757
AT1G74910			ADP-glucose pyrophosphorylase ...		Potri.012G075500 [exp]	6.00	0.7762
AT2G41310		ARR8, ATRR3	RESPONSE REGULATOR 8, response...		Potri.001G027000 [exp]	6.48	0.7473
AT1G21660			Chaperone DnaJ-domain superfam...		Potri.005G181700 [exp]	7.74	0.7370
AT3G63430			unknown protein		Potri.002G046700 [exp]	9.79	0.7424
AT4G24180		ATTLP1	THAUMATIN-LIKE PROTEIN 1 (.1)		Potri.005G241000 [exp]	10.58	0.7316
AT2G43290		MSS3	multicopy suppressors of snf4 ...		Potri.007G128600 [exp]	16.58	0.7145
AT4G28760			Protein of unknown function (D...		Potri.002G253600 [exp]	32.31	0.7345
AT1G28520	VOZ	ATVOZ1, VOZ1	vascular plant one zinc finger...		Potri.019G092800 [exp]	33.70	0.6797

Compare expression of checked genes

Potri.007G082800 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.