Plant FIBer expression Database

Potri.007G083100 [POPLAR]


External link
JGI Phytozome v13PopgenieAspWood                  
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT3G07440 56 / 5e-11 unknown protein
AT5G48530 40 / 1e-05 unknown protein
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.002G250500
[exp]
74 / 5e-18 AT3G07440 313 / 6e-109 unknown protein
Flax homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10009585
[exp]
49 / 1e-08 AT3G07440 292 / 1e-100 unknown protein
Lus10020404
[exp]
45 / 3e-07 AT3G07440 305 / 9e-106 unknown protein
PFAM info
Representative CDS sequence
>Potri.007G083100.2 pacid=42765625 polypeptide=Potri.007G083100.2.p locus=Potri.007G083100 ID=Potri.007G083100.2.v4.1 annot-version=v4.1
ATGCAGGACCAGGATTTTGGGAGAAACAGGCAAGGTGATACATGGGAAAAGGTTGGCCAAATTCGAGATAAATTTGAATATGACAGAGAGAAAAGAATGA
GGGAGAAGGGTATGTTCAATGCATATAATTTACTCAATGTGTGGTCACTTATATTTCTCGGGATAAATTGGTCAAGGGGTCATTCTTGTAGGTATAAGTA
G
AA sequence
>Potri.007G083100.2 pacid=42765625 polypeptide=Potri.007G083100.2.p locus=Potri.007G083100 ID=Potri.007G083100.2.v4.1 annot-version=v4.1
MQDQDFGRNRQGDTWEKVGQIRDKFEYDREKRMREKGMFNAYNLLNVWSLIFLGINWSRGHSCRYK

DESeq2's median of ratios [POPLAR]

Mapped by: Order by: Show schematic diagram

Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol NWA:WTNWB:WTNWA:OE-ARK2NWB:OE-ARK2NWA:miRNA-ARK2NWB:miRNA-ARK2NW 0hrWT H20WT-NWTUA1dEY NWTUA1dEY+TUB15 NWTUA1dY+TUB9 NWPde NWNWA:WT GANWBWT GATW:WTTW:WT GANWA:OE-ARK2 GANWB:OE-ARK2 GATW:OE-ARK2TW:OE-ARK2 GANWA:miRNA-ARK2 GANWB:miRNA-ARK2 GATW:miRNA-ARK2TW:miRNA-ARK2 GATW 2hrTW 8hrTW 24hrTW 48hrTW 96hrTW 336hrWT ACC35S::etr1-1 H2035S::etr1-1 ACCLMX5::etr1-1 H20LMX5::etr1-1 ACCWT-TWTUA1dEY TWTUA1dEY+TUB15 TWTUA1dY+TUB9 TWPde TWOW:WTOW:WT GAOW:OE-ARK2OW:OE-ARK2 GAOW:miRNA-ARK2OW:miRNA-ARK2 GAOW 2hrOW 8hrOW 24hrOW 48hrOW 96hrOW 336hrRoot CTRRoot LongColdRoot LongDrougtRoot LongHeatRoot LongSaltRoot ShortColdRoot ShortDrougtRoot ShortHeatRoot ShortSaltPtr rootLeaf CTRLeaf LongColdLeaf LongDrougtLeaf LongHeatLeaf LongSaltLeaf ShortColdLeaf ShortDrougtLeaf ShortHeatLeaf ShortSaltPtr leafStem CTRStem LongColdStem LongDrougtStem LongHeatStem LongSaltStem ShortColdStem ShortDrougtStem ShortHeatStem ShortSaltPtr shootPtr xylemPtr phloemPtr fiberPtr vesselPtr fiber vessel ray
AT3G07440 unknown protein Potri.007G083100
[exp]
0 1
AT2G27170 SMC3, TTN7 TITAN7, STRUCTURAL MAINTENANCE... Potri.009G154550
[exp]
10.19 0.8448
AT5G05210 Surfeit locus protein 6 (.1.2) Potri.008G173300
[exp]
11.48 0.8696
Potri.015G024900
[exp]
12.24 0.8634
AT1G21280 unknown protein Potri.004G133001
[exp]
23.74 0.8589
AT1G61010 CPSF73-I cleavage and polyadenylation s... Potri.017G076300
[exp]
26.32 0.8019
AT1G07930 GTP binding Elongation factor ... Potri.016G086450
[exp]
27.71 0.8460
AT1G43850 SEU SEUSS transcriptional co-regul... Potri.010G052150
[exp]
35.67 0.8339
AT2G20110 CPP Tesmin/TSO1-like CXC domain-co... Potri.001G184800
[exp]
37.33 0.7932
Potri.010G031375
[exp]
40.21 0.8176
AT3G14470 NB-ARC domain-containing disea... Potri.013G041800
[exp]
40.34 0.8158

Potri.007G083100 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.