Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G26330 363 / 5e-121 CYP71B37 "cytochrome P450, family 71, subfamily B, polypeptide 37", cytochrome P450, family 71, subfamily B, polypeptide 37 (.1) AT5G57260 362 / 2e-120 CYP71B10 "cytochrome P450, family 71, subfamily B, polypeptide 10", cytochrome P450, family 71, subfamily B, polypeptide 10 (.1) AT3G26300 362 / 3e-120 CYP71B34 "cytochrome P450, family 71, subfamily B, polypeptide 34", cytochrome P450, family 71, subfamily B, polypeptide 34 (.1) AT3G26310 357 / 3e-118 CYP71B35 "cytochrome P450, family 71, subfamily B, polypeptide 35", cytochrome P450, family 71, subfamily B, polypeptide 35 (.1) AT3G26210 354 / 4e-117 CYP71B23 "cytochrome P450, family 71, subfamily B, polypeptide 23", cytochrome P450, family 71, subfamily B, polypeptide 23 (.1) AT3G48310 353 / 5e-117 CYP71A22 "cytochrome P450, family 71, subfamily A, polypeptide 22", cytochrome P450, family 71, subfamily A, polypeptide 22 (.1) AT4G36220 353 / 2e-116 CYP84A1, FAH1, F5H1 ferulic acid 5-hydroxylase 1 (.1) AT3G26320 350 / 1e-115 CYP71B36 "cytochrome P450, family 71, subfamily B, polypeptide 36", cytochrome P450, family 71, subfamily B, polypeptide 36 (.1) AT5G07990 345 / 1e-113 CYP75B1, D501, TT7 TRANSPARENT TESTA 7, CYTOCHROME P450 75B1, Cytochrome P450 superfamily protein (.1) AT3G48300 342 / 1e-112 CYP71A23 "cytochrome P450, family 71, subfamily A, polypeptide 23", cytochrome P450, family 71, subfamily A, polypeptide 23 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.007G083000 [exp] 989 / 0 AT3G26330 368 / 8e-123 "cytochrome P450, family 71, subfamily B, polypeptide 37", cytochrome P450, family 71, subfamily B, polypeptide 37 (.1) Potri.007G082900 [exp] 937 / 0 AT3G26300 377 / 2e-126 "cytochrome P450, family 71, subfamily B, polypeptide 34", cytochrome P450, family 71, subfamily B, polypeptide 34 (.1) Potri.007G083500 [exp] 935 / 0 AT3G26300 377 / 2e-126 "cytochrome P450, family 71, subfamily B, polypeptide 34", cytochrome P450, family 71, subfamily B, polypeptide 34 (.1) Potri.007G084800 [exp] 932 / 0 AT3G26300 380 / 3e-127 "cytochrome P450, family 71, subfamily B, polypeptide 34", cytochrome P450, family 71, subfamily B, polypeptide 34 (.1) Potri.007G084200 [exp] 687 / 0 AT3G26300 385 / 1e-129 "cytochrome P450, family 71, subfamily B, polypeptide 34", cytochrome P450, family 71, subfamily B, polypeptide 34 (.1) Potri.007G084700 [exp] 683 / 0 AT5G07990 397 / 5e-134 TRANSPARENT TESTA 7, CYTOCHROME P450 75B1, Cytochrome P450 superfamily protein (.1) Potri.007G085000 [exp] 682 / 0 AT5G07990 402 / 5e-135 TRANSPARENT TESTA 7, CYTOCHROME P450 75B1, Cytochrome P450 superfamily protein (.1) Potri.007G084400 [exp] 611 / 0 AT4G36220 267 / 2e-85 ferulic acid 5-hydroxylase 1 (.1) Potri.012G090000 [exp] 395 / 6e-133 AT3G26330 433 / 5e-148 "cytochrome P450, family 71, subfamily B, polypeptide 37", cytochrome P450, family 71, subfamily B, polypeptide 37 (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10008112 [exp] 389 / 1e-130 AT5G07990 407 / 2e-137 TRANSPARENT TESTA 7, CYTOCHROME P450 75B1, Cytochrome P450 superfamily protein (.1) Lus10013150 [exp] 386 / 2e-129 AT5G07990 403 / 4e-136 TRANSPARENT TESTA 7, CYTOCHROME P450 75B1, Cytochrome P450 superfamily protein (.1) Lus10004517 [exp] 374 / 4e-125 AT4G31500 489 / 6e-170 SUPERROOT 2, RUNT 1, RED ELONGATED 1, "cytochrome P450, family 83, subfamily B, polypeptide 1", ALTERED TRYPTOPHAN REGULATION 4, cytochrome P450, family 83, subfamily B, polypeptide 1 (.1) Lus10035502 [exp] 363 / 2e-120 AT5G06900 533 / 0.0 "cytochrome P450, family 93, subfamily D, polypeptide 1", cytochrome P450, family 93, subfamily D, polypeptide 1 (.1) Lus10030924 [exp] 362 / 4e-120 AT3G26300 391 / 2e-131 "cytochrome P450, family 71, subfamily B, polypeptide 34", cytochrome P450, family 71, subfamily B, polypeptide 34 (.1) Lus10034502 [exp] 357 / 4e-119 AT4G31500 477 / 1e-166 SUPERROOT 2, RUNT 1, RED ELONGATED 1, "cytochrome P450, family 83, subfamily B, polypeptide 1", ALTERED TRYPTOPHAN REGULATION 4, cytochrome P450, family 83, subfamily B, polypeptide 1 (.1) Lus10019457 [exp] 357 / 4e-118 AT3G48280 467 / 2e-161 "cytochrome P450, family 71, subfamily A, polypeptide 25", cytochrome P450, family 71, subfamily A, polypeptide 25 (.1) Lus10028361 [exp] 356 / 8e-118 AT4G36220 725 / 0.0 ferulic acid 5-hydroxylase 1 (.1) Lus10017961 [exp] 354 / 5e-117 AT3G48280 502 / 4e-175 "cytochrome P450, family 71, subfamily A, polypeptide 25", cytochrome P450, family 71, subfamily A, polypeptide 25 (.1) Lus10022303 [exp] 353 / 6e-117 AT4G36220 680 / 0.0 ferulic acid 5-hydroxylase 1 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF00067 [poplar] [flax] p450 Cytochrome P450
Representative CDS sequence Show only first row Show all	>Potri.007G083300.1 pacid=42764887 polypeptide=Potri.007G083300.1.p locus=Potri.007G083300 ID=Potri.007G083300.1.v4.1 annot-version=v4.1 ATGGCTTGGATATTAACCACTCTAGCCTTGATTCCGCTCGCTTTCTTCCTCCGAGCTTGGCTGTCGAAAAGAAAGATCAAGGATAGCAAGTTACCCCCTG GTCCAATAGGGTTTCCTATATTTGGTAGCTTACATTTGTTAGGGAAGTTCCCTCACCATGACTTGCATCAACTAGCAAAGAAGTATGGCCCTATCATGTA TATGCGGTTAGGCTTGGTGCCTACTGTAGTTGTCTCATCGCCTCGGGCTGCCGAATTGATTCTTAAGACCCATGACCTCGTGTTTGCTAATAGGCCACCA AATGAGGCTGCGAAGCATATCACTTACGAGCAGAAGGGCTTAACATTTGCTCCATATGGTTCTTATTGGCGCAACGTGCGCAAGATGTGTACCCTTGAGT TGCTTAGCAACCATAAAATAAATTCTTTCATGTCCACGAGGAAAGAAGAGCTTGACCTCTTGATTGACTACATTAAAGACGCTTCTCGTGATCGTGTTGC TGTTGATCTTAGTGCCAAGGTCTCATCTCTAAACGCTGACATCAGTTGTAGGATGATTTTTGGAAAGAAAGACTTGGAAAAGGAATTTGATGAGAGGGGG TTCGAACCACTGACTCATGAGGGCATCCGTATAGCAGCAAGTTTTAACTTGGGAGATTACATCCCTCCAATTGCACCACTTGACCTTCAGGGTCTTACAA AGCGCATGAAGGCCATAGGCAAGGTTTTTGATGACTTCTTTGAGAAGATTATTGATGAGCACATTCAGTTCAAGGACGAAAACAGAACTAAAGATTTTCT TGATGTCATGTTGGACTTCTTGGGATCTGAAGAAACTGAGTATCGTATTGGTCGAGGCAACATCAAAGCCATAATCTTGGACATGCTTGTAGGCTCAATG GACACCCCAGCCGCAGCAATTGAGTGGACTCTCTCCGAGCTCATCAAGCATCCAAGAGTAATGAAGAAAGTCCAGAAAGAACTGGAAGAGAAAATAGGCA TGGATAGAATGGTGGAAGAATCAGACTTGGAGGGCTTGGAGTACTTGCACATGGTTATAAAGGAAGCTTTCAGGCTCCATCCAGTGGCACCTCTACTTGT CCCTCACGAGTCAATGGAAGATTGCACCATAGATGGCTTCCTCATCCCGCAAAAAACACGTGTTCTTGTAAACGTTTGGGCTATTGGACGCGACCAAAGT GCCTGGACTGATGATGCAAATAAGTTTATTCCAGAGAGGTTTGCTGGGAGTAACATAGATGTTCGTGGACGCGATTTCCAGCTTCTCACCTTCGGGGCTG GGCGCAGGAGCTGCCCTGGAATGCATTTGGGACTAACCATGGTTCGGCAAATTGTGGCACAGCTGGTGCATTGCTTTGACTGGGAGCTTCCTAACAATAT GTTGCCGGAGGAATTGGACATGACTGAGGCGTTTGGTCTTGTAACCCCGAGAGCAAACCATCTGTGCGCCACTCCAACTTATCGCCTTCACCTCTGA
AA sequence Show only first row Show all	>Potri.007G083300.1 pacid=42764887 polypeptide=Potri.007G083300.1.p locus=Potri.007G083300 ID=Potri.007G083300.1.v4.1 annot-version=v4.1 MAWILTTLALIPLAFFLRAWLSKRKIKDSKLPPGPIGFPIFGSLHLLGKFPHHDLHQLAKKYGPIMYMRLGLVPTVVVSSPRAAELILKTHDLVFANRPP NEAAKHITYEQKGLTFAPYGSYWRNVRKMCTLELLSNHKINSFMSTRKEELDLLIDYIKDASRDRVAVDLSAKVSSLNADISCRMIFGKKDLEKEFDERG FEPLTHEGIRIAASFNLGDYIPPIAPLDLQGLTKRMKAIGKVFDDFFEKIIDEHIQFKDENRTKDFLDVMLDFLGSEETEYRIGRGNIKAIILDMLVGSM DTPAAAIEWTLSELIKHPRVMKKVQKELEEKIGMDRMVEESDLEGLEYLHMVIKEAFRLHPVAPLLVPHESMEDCTIDGFLIPQKTRVLVNVWAIGRDQS AWTDDANKFIPERFAGSNIDVRGRDFQLLTFGAGRRSCPGMHLGLTMVRQIVAQLVHCFDWELPNNMLPEELDMTEAFGLVTPRANHLCATPTYRLHL

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT3G26330		CYP71B37	"cytochrome P450, family 71, s...		Potri.007G083300 [exp]	0	1
AT3G50440		ATMES10	ARABIDOPSIS THALIANA METHYL ES...		Potri.009G107500 [exp]	7.34	0.8061
AT5G17050		UGT78D2	UDP-glucosyl transferase 78D2 ...		Potri.018G096000 [exp]	7.34	0.7912
AT1G08510		FATB	fatty acyl-ACP thioesterases B...		Potri.001G177600 [exp]	14.28	0.7833
					Potri.004G021901 [exp]	16.00	0.7747
AT3G10330			Cyclin-like family protein (.1...		Potri.015G067500 [exp]	24.04	0.7423	TFIIB1.1
AT3G57520		RS2, ATSIP2	raffinose synthase 2, seed imb...		Potri.016G054700 [exp]	32.86	0.7554
					Potri.010G210400 [exp]	35.72	0.7074
AT5G27020			unknown protein		Potri.005G021500 [exp]	36.00	0.7399
AT1G72570	AP2_ERF		Integrase-type DNA-binding sup...		Potri.001G169500 [exp]	38.41	0.7335	RAP15
AT1G32240	GARP	KAN2, KANADI2	KANADI 2, Homeodomain-like sup...		Potri.001G137600 [exp]	41.07	0.7980

Compare expression of checked genes

Potri.007G083300 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.