Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G26300 385 / 1e-129 CYP71B34 "cytochrome P450, family 71, subfamily B, polypeptide 34", cytochrome P450, family 71, subfamily B, polypeptide 34 (.1) AT5G07990 383 / 2e-128 CYP75B1, D501, TT7 TRANSPARENT TESTA 7, CYTOCHROME P450 75B1, Cytochrome P450 superfamily protein (.1) AT3G26310 378 / 1e-126 CYP71B35 "cytochrome P450, family 71, subfamily B, polypeptide 35", cytochrome P450, family 71, subfamily B, polypeptide 35 (.1) AT3G26330 377 / 2e-126 CYP71B37 "cytochrome P450, family 71, subfamily B, polypeptide 37", cytochrome P450, family 71, subfamily B, polypeptide 37 (.1) AT5G57260 372 / 2e-124 CYP71B10 "cytochrome P450, family 71, subfamily B, polypeptide 10", cytochrome P450, family 71, subfamily B, polypeptide 10 (.1) AT1G13110 365 / 8e-122 CYP71B7 "cytochrome P450, family 71 subfamily B, polypeptide 7", cytochrome P450, family 71 subfamily B, polypeptide 7 (.1) AT3G26320 363 / 5e-121 CYP71B36 "cytochrome P450, family 71, subfamily B, polypeptide 36", cytochrome P450, family 71, subfamily B, polypeptide 36 (.1) AT2G45550 361 / 5e-120 CYP76C4 "cytochrome P450, family 76, subfamily C, polypeptide 4", cytochrome P450, family 76, subfamily C, polypeptide 4 (.1) AT1G13080 361 / 7e-120 CYP71B2 "cytochrome P450, family 71, subfamily B, polypeptide 2", cytochrome P450, family 71, subfamily B, polypeptide 2 (.1.2) AT3G26210 357 / 2e-118 CYP71B23 "cytochrome P450, family 71, subfamily B, polypeptide 23", cytochrome P450, family 71, subfamily B, polypeptide 23 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.007G085000 [exp] 941 / 0 AT5G07990 402 / 5e-135 TRANSPARENT TESTA 7, CYTOCHROME P450 75B1, Cytochrome P450 superfamily protein (.1) Potri.007G084700 [exp] 938 / 0 AT5G07990 397 / 5e-134 TRANSPARENT TESTA 7, CYTOCHROME P450 75B1, Cytochrome P450 superfamily protein (.1) Potri.007G084800 [exp] 707 / 0 AT3G26300 380 / 3e-127 "cytochrome P450, family 71, subfamily B, polypeptide 34", cytochrome P450, family 71, subfamily B, polypeptide 34 (.1) Potri.007G082900 [exp] 704 / 0 AT3G26300 377 / 2e-126 "cytochrome P450, family 71, subfamily B, polypeptide 34", cytochrome P450, family 71, subfamily B, polypeptide 34 (.1) Potri.007G083500 [exp] 702 / 0 AT3G26300 377 / 2e-126 "cytochrome P450, family 71, subfamily B, polypeptide 34", cytochrome P450, family 71, subfamily B, polypeptide 34 (.1) Potri.007G083000 [exp] 700 / 0 AT3G26330 368 / 8e-123 "cytochrome P450, family 71, subfamily B, polypeptide 37", cytochrome P450, family 71, subfamily B, polypeptide 37 (.1) Potri.007G083300 [exp] 693 / 0 AT3G26330 363 / 7e-121 "cytochrome P450, family 71, subfamily B, polypeptide 37", cytochrome P450, family 71, subfamily B, polypeptide 37 (.1) Potri.007G084400 [exp] 436 / 6e-152 AT4G36220 267 / 2e-85 ferulic acid 5-hydroxylase 1 (.1) Potri.001G167900 [exp] 422 / 9e-144 AT5G07990 369 / 1e-122 TRANSPARENT TESTA 7, CYTOCHROME P450 75B1, Cytochrome P450 superfamily protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10013150 [exp] 412 / 2e-139 AT5G07990 403 / 4e-136 TRANSPARENT TESTA 7, CYTOCHROME P450 75B1, Cytochrome P450 superfamily protein (.1) Lus10008112 [exp] 394 / 2e-132 AT5G07990 407 / 2e-137 TRANSPARENT TESTA 7, CYTOCHROME P450 75B1, Cytochrome P450 superfamily protein (.1) Lus10019457 [exp] 381 / 1e-127 AT3G48280 467 / 2e-161 "cytochrome P450, family 71, subfamily A, polypeptide 25", cytochrome P450, family 71, subfamily A, polypeptide 25 (.1) Lus10017961 [exp] 381 / 1e-127 AT3G48280 502 / 4e-175 "cytochrome P450, family 71, subfamily A, polypeptide 25", cytochrome P450, family 71, subfamily A, polypeptide 25 (.1) Lus10017742 [exp] 376 / 2e-125 AT5G07990 400 / 9e-135 TRANSPARENT TESTA 7, CYTOCHROME P450 75B1, Cytochrome P450 superfamily protein (.1) Lus10043308 [exp] 373 / 2e-124 AT3G48280 463 / 5e-160 "cytochrome P450, family 71, subfamily A, polypeptide 25", cytochrome P450, family 71, subfamily A, polypeptide 25 (.1) Lus10002885 [exp] 365 / 4e-121 AT3G48280 396 / 2e-133 "cytochrome P450, family 71, subfamily A, polypeptide 25", cytochrome P450, family 71, subfamily A, polypeptide 25 (.1) Lus10035502 [exp] 362 / 6e-120 AT5G06900 533 / 0.0 "cytochrome P450, family 93, subfamily D, polypeptide 1", cytochrome P450, family 93, subfamily D, polypeptide 1 (.1) Lus10041951 [exp] 357 / 3e-118 AT3G48280 519 / 0.0 "cytochrome P450, family 71, subfamily A, polypeptide 25", cytochrome P450, family 71, subfamily A, polypeptide 25 (.1) Lus10008936 [exp] 356 / 6e-118 AT2G45550 499 / 6e-174 "cytochrome P450, family 76, subfamily C, polypeptide 4", cytochrome P450, family 76, subfamily C, polypeptide 4 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF00067 [poplar] [flax] p450 Cytochrome P450
Representative CDS sequence Show only first row Show all	>Potri.007G084200.1 pacid=42765794 polypeptide=Potri.007G084200.1.p locus=Potri.007G084200 ID=Potri.007G084200.1.v4.1 annot-version=v4.1 ATGGCTTGGATTTGGACTTCTCTAGCCTTTGTTGCACTTATCTTTCTGCTCCAATGGTTAAGCACCAAGAATAAGAGACTTCCACCTGGTCCAAGAGGGT TTCCAATTTTTGGAAGTCTTCATTTGTTAGGGAAGTTTCCTCATCGAGCTTTTCATCAACTTGCTCAAAAATATGGCCCCATCATGCATTTGCGGTTAGG CCTGGTGCCAACCATTGTTGTCTCTTCGCCTGAAGCTGCCGAATTATTTCTTAAGACTCATGACCTTGTTTTTGCTGGTAGACCACCTCACGAGTCTGCA AGGTACATCTCTTATGGACAAAAAAGCGTGACTTTTTCACAATACGGCTCGTATTGGCGCAACATGCGTAAGATGTGCACAGTAGAGTTGCTTAGTAGCT TGAAAATTACATCTTTCAAGTCAACGAGAATGGAAGAGCTTGATCTGTTGATTAAGTACATTCAAGAAGCTGCACAGGAACGTGTTGCTGTCGATCTGAG TGCCAAGGTTTCGTCCCTCAGTGCTGACATGAGCTGTAGAATGGTGTTTGGGAAGAAATATTTAGATGAGGATCTTGATGAGAGGGGATTCAAATCTGTG ATGCAAGAGGTCATGCATTTATCAGCAGCTCCAAACTTGGGGGATTACATTCCTCAAATCGGAGCTCTTGATCTCCAGGGACTGACAAAACGCATGAAGG CTGTTTCCAAAGTTTTAGATTTGTTTGTTAGCAAGATTATTGACGAGCATGCCCAATACCAGGAGAAGGGCAAAAACAAGGACTTTGTTGATGTCATGCT AAGTTGCATGAAATCCGAAGAAAACGAGTACCTTGTTGATCAAGGCTGTATGAAAGCCATAATGCTGGACATGCTTGCGGGTTCAATGGACACTTCATCA ACTGTGATTGACTGGGCATTCTCAGAACTGATAAAAAATCCACGGGTTATGAAGAAACTGCAAAAAGAATTAGAAGAAGTAGTGGGAAAGCAAAGGATGG TAGAAGAATCAGACTTGGAGAGTTTGGAGTACCTAGACATGGTTGTGAAGGAAACCTTTCGGCTCCATCCAGTGGGTCCTTTGCTGATCCCTCATGAGGC CATGGAGGACTGCATTGTGAACGGCTTCCACATACCAAAGAAATCACATGTTATAATCAATGTATGGGCCATTGGTCGAGACCCAAAAGCTTGGACCGAT GCAGAAAATTTTTATCCAGAGAGGTTTGTTGGCAGTGACATAGATGTTCGGGGCCGAAACTTCCAGCTTATTCCATTTGGCGCTGGCCGCAGAAGCTGCC CTGGAATGCAATTGGGGCTAACTGTGGTGCGACTGGTGCTTGCGCAGCTGGTGCATTGCTTTGATTGGGAGCTTCCAAACGGAATATTGCCATCTGAAGT GGACATGACTGAAGAGTTTGGTCTCGTAATTTGCAGGTCCAAGCATCTAGTAGCTATTCCTACATATCGCCTTAATAAATGA
AA sequence Show only first row Show all	>Potri.007G084200.1 pacid=42765794 polypeptide=Potri.007G084200.1.p locus=Potri.007G084200 ID=Potri.007G084200.1.v4.1 annot-version=v4.1 MAWIWTSLAFVALIFLLQWLSTKNKRLPPGPRGFPIFGSLHLLGKFPHRAFHQLAQKYGPIMHLRLGLVPTIVVSSPEAAELFLKTHDLVFAGRPPHESA RYISYGQKSVTFSQYGSYWRNMRKMCTVELLSSLKITSFKSTRMEELDLLIKYIQEAAQERVAVDLSAKVSSLSADMSCRMVFGKKYLDEDLDERGFKSV MQEVMHLSAAPNLGDYIPQIGALDLQGLTKRMKAVSKVLDLFVSKIIDEHAQYQEKGKNKDFVDVMLSCMKSEENEYLVDQGCMKAIMLDMLAGSMDTSS TVIDWAFSELIKNPRVMKKLQKELEEVVGKQRMVEESDLESLEYLDMVVKETFRLHPVGPLLIPHEAMEDCIVNGFHIPKKSHVIINVWAIGRDPKAWTD AENFYPERFVGSDIDVRGRNFQLIPFGAGRRSCPGMQLGLTVVRLVLAQLVHCFDWELPNGILPSEVDMTEEFGLVICRSKHLVAIPTYRLNK

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT3G26300		CYP71B34	"cytochrome P450, family 71, s...		Potri.007G084200 [exp]	0	1
AT3G57650		LPAT2	lysophosphatidyl acyltransfera...		Potri.009G054500 [exp]	2.44	0.9997
AT4G35160			O-methyltransferase family pro...		Potri.019G093100 [exp]	2.64	0.9997
AT5G48930		HCT	hydroxycinnamoyl-CoA shikimate...		Potri.005G028000 [exp]	5.47	0.9997
AT1G29670			GDSL-like Lipase/Acylhydrolase...		Potri.019G005400 [exp]	7.74	0.9997
AT3G11680			Aluminium activated malate tra...		Potri.016G070100 [exp]	8.48	0.9996
AT4G37370		CYP81D8	"cytochrome P450, family 81, s...		Potri.003G006000 [exp]	11.74	0.9995	CYP81S3,Pt-CYP81.3
AT5G50690		ATHSD7	hydroxysteroid dehydrogenase 7...		Potri.012G101900 [exp]	11.83	0.9996
AT5G13930		ATCHS, TT4, CHS	TRANSPARENT TESTA 4, CHALCONE ...		Potri.003G176700 [exp]	13.78	0.9996	CHS.3
AT1G47620		CYP96A8	"cytochrome P450, family 96, s...		Potri.005G094500 [exp]	14.69	0.9996	CYP96G1,Pt-CYP96.2
AT2G38540		ATLTP1, LP1	ARABIDOPSIS THALIANA LIPID TRA...		Potri.006G108100 [exp]	14.83	0.9996	Pt-LTP1.1

Compare expression of checked genes

Potri.007G084200 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.