Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G36220 267 / 1e-85 CYP84A1, FAH1, F5H1 ferulic acid 5-hydroxylase 1 (.1) AT3G26330 260 / 5e-83 CYP71B37 "cytochrome P450, family 71, subfamily B, polypeptide 37", cytochrome P450, family 71, subfamily B, polypeptide 37 (.1) AT3G26300 258 / 2e-82 CYP71B34 "cytochrome P450, family 71, subfamily B, polypeptide 34", cytochrome P450, family 71, subfamily B, polypeptide 34 (.1) AT3G26310 251 / 2e-79 CYP71B35 "cytochrome P450, family 71, subfamily B, polypeptide 35", cytochrome P450, family 71, subfamily B, polypeptide 35 (.1) AT5G57260 249 / 6e-79 CYP71B10 "cytochrome P450, family 71, subfamily B, polypeptide 10", cytochrome P450, family 71, subfamily B, polypeptide 10 (.1) AT5G07990 249 / 1e-78 CYP75B1, D501, TT7 TRANSPARENT TESTA 7, CYTOCHROME P450 75B1, Cytochrome P450 superfamily protein (.1) AT3G26320 246 / 1e-77 CYP71B36 "cytochrome P450, family 71, subfamily B, polypeptide 36", cytochrome P450, family 71, subfamily B, polypeptide 36 (.1) AT3G48300 245 / 2e-77 CYP71A23 "cytochrome P450, family 71, subfamily A, polypeptide 23", cytochrome P450, family 71, subfamily A, polypeptide 23 (.1) AT2G45550 243 / 3e-76 CYP76C4 "cytochrome P450, family 76, subfamily C, polypeptide 4", cytochrome P450, family 76, subfamily C, polypeptide 4 (.1) AT1G01280 242 / 4e-76 CYP703A2 "cytochrome P450, family 703, subfamily A, polypeptide 2", cytochrome P450, family 703, subfamily A, polypeptide 2 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.007G084800 [exp] 630 / 0 AT3G26300 380 / 3e-127 "cytochrome P450, family 71, subfamily B, polypeptide 34", cytochrome P450, family 71, subfamily B, polypeptide 34 (.1) Potri.007G082900 [exp] 625 / 0 AT3G26300 377 / 2e-126 "cytochrome P450, family 71, subfamily B, polypeptide 34", cytochrome P450, family 71, subfamily B, polypeptide 34 (.1) Potri.007G083500 [exp] 622 / 0 AT3G26300 377 / 2e-126 "cytochrome P450, family 71, subfamily B, polypeptide 34", cytochrome P450, family 71, subfamily B, polypeptide 34 (.1) Potri.007G083000 [exp] 606 / 0 AT3G26330 368 / 8e-123 "cytochrome P450, family 71, subfamily B, polypeptide 37", cytochrome P450, family 71, subfamily B, polypeptide 37 (.1) Potri.007G083300 [exp] 601 / 0 AT3G26330 363 / 7e-121 "cytochrome P450, family 71, subfamily B, polypeptide 37", cytochrome P450, family 71, subfamily B, polypeptide 37 (.1) Potri.007G084200 [exp] 449 / 4e-157 AT3G26300 385 / 1e-129 "cytochrome P450, family 71, subfamily B, polypeptide 34", cytochrome P450, family 71, subfamily B, polypeptide 34 (.1) Potri.007G084700 [exp] 444 / 6e-155 AT5G07990 397 / 5e-134 TRANSPARENT TESTA 7, CYTOCHROME P450 75B1, Cytochrome P450 superfamily protein (.1) Potri.007G085000 [exp] 445 / 1e-154 AT5G07990 402 / 5e-135 TRANSPARENT TESTA 7, CYTOCHROME P450 75B1, Cytochrome P450 superfamily protein (.1) Potri.001G167900 [exp] 276 / 4e-89 AT5G07990 369 / 1e-122 TRANSPARENT TESTA 7, CYTOCHROME P450 75B1, Cytochrome P450 superfamily protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10013150 [exp] 280 / 3e-90 AT5G07990 403 / 4e-136 TRANSPARENT TESTA 7, CYTOCHROME P450 75B1, Cytochrome P450 superfamily protein (.1) Lus10008112 [exp] 279 / 6e-90 AT5G07990 407 / 2e-137 TRANSPARENT TESTA 7, CYTOCHROME P450 75B1, Cytochrome P450 superfamily protein (.1) Lus10022303 [exp] 273 / 1e-87 AT4G36220 680 / 0.0 ferulic acid 5-hydroxylase 1 (.1) Lus10035502 [exp] 273 / 1e-87 AT5G06900 533 / 0.0 "cytochrome P450, family 93, subfamily D, polypeptide 1", cytochrome P450, family 93, subfamily D, polypeptide 1 (.1) Lus10041511 [exp] 270 / 1e-86 AT4G36220 687 / 0.0 ferulic acid 5-hydroxylase 1 (.1) Lus10027798 [exp] 263 / 4e-86 AT5G06900 349 / 1e-117 "cytochrome P450, family 93, subfamily D, polypeptide 1", cytochrome P450, family 93, subfamily D, polypeptide 1 (.1) Lus10034502 [exp] 265 / 1e-85 AT4G31500 477 / 1e-166 SUPERROOT 2, RUNT 1, RED ELONGATED 1, "cytochrome P450, family 83, subfamily B, polypeptide 1", ALTERED TRYPTOPHAN REGULATION 4, cytochrome P450, family 83, subfamily B, polypeptide 1 (.1) Lus10028361 [exp] 266 / 4e-85 AT4G36220 725 / 0.0 ferulic acid 5-hydroxylase 1 (.1) Lus10014273 [exp] 264 / 2e-84 AT4G36220 721 / 0.0 ferulic acid 5-hydroxylase 1 (.1) Lus10000326 [exp] 259 / 5e-84 AT4G36220 523 / 0.0 ferulic acid 5-hydroxylase 1 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF00067 [poplar] [flax] p450 Cytochrome P450
Representative CDS sequence Show only first row Show all	>Potri.007G084400.2 pacid=42766320 polypeptide=Potri.007G084400.2.p locus=Potri.007G084400 ID=Potri.007G084400.2.v4.1 annot-version=v4.1 ATGCTTCTCGTGAGCGTGTTGCTGTTGATCTTAGTGCCAAAGGTCTCATCTCTAAGCGCTGACATCAGTTGTAGGATGGTTTTAGGAAAGAAATACATGG AAAAGGAATTTCATGAGAAGGGGTTCAAACCAGTGATTCATGAGGGCATGCGTTTAGCAGCAAGTTTTAACTTCGGTGATTACATCCCTCCAATTGCGCC ACTTGACCTTCAGGGTCTTACAAAGCGCATGAAGGCCGTAGGCAAGGTATTTGATGACTTCTTTGAGAAGATTATTGATGAGCACATTCAATTCAAGGAT GAAAACAGAACCAAAGATTTTGTTGATGTCATGTTGGACTTCTTGGGATCTGAAGAAACTGAGTATCGTATTGTTCGAGACAACATCAAAGCCATAATCA TGGACATGCTTGTAGGCTCAATGGACACCTCAGCCACAGCAATTGAGTGGACTCTCTCCGAGCTCATCAAGCATCCAAGAGTAATGAAGAAAGTCCAGAA AGAGCTGGAAGAGAAAATAGGCATGGATAGAATGGTGGAAGAATCAGACTTGGAGGGCTTGGAGTACTTGCACATGGTTATAAAGGAAGCTTTCAGGCTC CATCCAGTGGCACCTCTACTTATCCCTCACGAGTCAATGGAAGATTGCACCATAGATGGCTTCCTAATCCCGCAAAAAACACGTGTTATTGTAAACGTTT GGGCTATTGGACGCGAGCAAAGTGCTTGGACTGATTCAAATAAGTTTATTCCAGAGAGGTTTGCTGGGAGTAACATAGATGTTCGTGGACGCGATTTCCA GCTTCTCCCCTTCGGGGCTGGGCGCAGGGGCTGCCCTGGAATGCATTTGGGACTAACCATGGATCTGCAAATTGTGGCACAGCTGGTGCATTGCTTTGAT TGGGAGCTTCGTAAAAATATGTTGCGGGAGGAAGTGGACATGACTGAGGCGTTTGGTCTTGTAACCCCGAGAGCAAACCATCTGTGCGCCACTCCTACTT ATCGCCTTCACCTCTGA
AA sequence Show only first row Show all	>Potri.007G084400.2 pacid=42766320 polypeptide=Potri.007G084400.2.p locus=Potri.007G084400 ID=Potri.007G084400.2.v4.1 annot-version=v4.1 MLLVSVLLLILVPKVSSLSADISCRMVLGKKYMEKEFHEKGFKPVIHEGMRLAASFNFGDYIPPIAPLDLQGLTKRMKAVGKVFDDFFEKIIDEHIQFKD ENRTKDFVDVMLDFLGSEETEYRIVRDNIKAIIMDMLVGSMDTSATAIEWTLSELIKHPRVMKKVQKELEEKIGMDRMVEESDLEGLEYLHMVIKEAFRL HPVAPLLIPHESMEDCTIDGFLIPQKTRVIVNVWAIGREQSAWTDSNKFIPERFAGSNIDVRGRDFQLLPFGAGRRGCPGMHLGLTMDLQIVAQLVHCFD WELRKNMLREEVDMTEAFGLVTPRANHLCATPTYRLHL

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT4G36220		CYP84A1, FAH1, ...	ferulic acid 5-hydroxylase 1 (...		Potri.007G084400 [exp]	0	1
AT3G05858			unknown protein		Potri.013G002000 [exp]	5.47	0.8903
AT3G26330		CYP71B37	"cytochrome P450, family 71, s...		Potri.007G083000 [exp]	8.00	0.9123
AT1G03670			ankyrin repeat family protein ...		Potri.013G134500 [exp]	8.66	0.8739
AT3G50440		ATMES10	ARABIDOPSIS THALIANA METHYL ES...		Potri.009G107500 [exp]	9.79	0.8543
AT5G04040		SDP1	SUGAR-DEPENDENT1, Patatin-like...		Potri.006G043800 [exp]	11.74	0.8147
AT4G37870		PCK1, PEPCK	phosphoenolpyruvate carboxykin...		Potri.007G011200 [exp]	15.62	0.8169
AT1G15670			Galactose oxidase/kelch repeat...		Potri.006G196900 [exp]	17.66	0.8847
					Potri.002G056400 [exp]	23.45	0.8769
AT4G36010			Pathogenesis-related thaumatin...		Potri.005G112700 [exp]	23.87	0.8051
AT3G26300		CYP71B34	"cytochrome P450, family 71, s...		Potri.007G083500 [exp]	26.83	0.8810

Compare expression of checked genes

Potri.007G084400 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.