Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G19820 509 / 1e-167 EMB2734 embryo defective 2734, ARM repeat superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.017G137400 [exp] 595 / 0 AT5G19820 682 / 0.0 embryo defective 2734, ARM repeat superfamily protein (.1) Potri.004G082601 [exp] 578 / 0 AT5G19820 554 / 0.0 embryo defective 2734, ARM repeat superfamily protein (.1) Potri.003G220100 [exp] 535 / 9e-178 AT5G19820 1754 / 0.0 embryo defective 2734, ARM repeat superfamily protein (.1) Potri.001G004800 [exp] 530 / 6e-176 AT5G19820 1776 / 0.0 embryo defective 2734, ARM repeat superfamily protein (.1) Potri.013G056600 [exp] 529 / 2e-175 AT5G19820 1644 / 0.0 embryo defective 2734, ARM repeat superfamily protein (.1) Potri.007G084501 [exp] 422 / 8e-146 AT5G19820 184 / 1e-53 embryo defective 2734, ARM repeat superfamily protein (.1) Potri.007G084100 [exp] 160 / 5e-47 AT5G19820 62 / 1e-12 embryo defective 2734, ARM repeat superfamily protein (.1) Potri.004G122133 [exp] 154 / 6e-43 AT5G19820 140 / 4e-38 embryo defective 2734, ARM repeat superfamily protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10013763 [exp] 523 / 4e-176 AT5G19820 1295 / 0.0 embryo defective 2734, ARM repeat superfamily protein (.1) Lus10039172 [exp] 501 / 8e-166 AT5G19820 1229 / 0.0 embryo defective 2734, ARM repeat superfamily protein (.1)
PFAM info
Representative CDS sequence Show only first row Show all	>Potri.007G084901.1 pacid=42766514 polypeptide=Potri.007G084901.1.p locus=Potri.007G084901 ID=Potri.007G084901.1.v4.1 annot-version=v4.1 ATGAAAATGGTTGACGACATGCATCATCATGTGCGTTGGAGAGCTATGTATGCAGTTGAGGAATTCTCCAAGTATTTACACCCTGAATTGCAGAATAACT ATAATCAAAAAGTGCTGCCTGCTTTAACGAAAGCTATGGATGATTTCAGTGATTCCAAAATTCAGGTGCAAGCTGCTATGGCAACTTATCACTTTGTTGA GTATTGCACTTCAAATATGCTAGAACCTCACCTTGATGAGATTATCAGTAAATTGCTCAGATGCCTACAGAAAGGGAAACAACTATTGAAACTTTGGGCC TTATCAGCATTAGCAGCAATTGCTAAGTCATCACAGGACCGGTTTCTAGAGTATTACAGAACAGTTATGCCTTACCTAAAAGTTGTGATGACGAAAGCAG AAGGGGAATCTAACAGCAAGCTCCTTTCTGCAACTGTTTCGTGCATTACAGCAATTTGGACGGTTTTTGGAAAGGACAAGTTCGGTGACGATACTCAACA GGTTGTGCAACTTCTTGTTTCCACACCCATATCAAATCTGGAGATACATGACCCAATGAGAATTGAAGGGTTAAGAGCATGGGGCAGGCTTTGCAAATGC TTAGGCCACAGGTTCCAGCCTTATATGGAAGTTGCCATTCCTTGTTTGCTTCAATCTGCGCGGCTCACTTTGCCTGATGATGCTAACGTTGAAGAATCGG ATGAAAGAAACCGGATGATTCAAATCAAAACTGAGACTCTGGAGGAGAAAGCCACAGCTTGTGTATTGTTGCGTGATTGCGTTGCTGAACTGAAAGAAGG CATTGATTTATGGATTGATGAGGTTGCTGAAACTTTAGTTCCACTTCTCAATTTTTACGAGCATGCTGAGGTTAGAATAGCTGCTGTATTAGCCATGCCT GAAATACTGAAATCGTCGAAAGCAGCAATTGAGAAAAGGCTTCTTCAGAAATCTCCCTTTGAAAAGTTGTGTTCTGATATAATACCAGCTTTGGTTGAAG CACTGGTTAAGGAAGAAGTCATTAAAATTAGTGCAGTAATGTTGGATTCCTTGGAGGATTGCTTGGAGTTATCGGGACCTGTTTTAAATATAGACCAGAT CAAGCGCTTCTTGTCTGTAATAATGGACGTTCTCGACACTAGCATATCCATTCCCAAAGTTGATGAAGCGTCAGAGCAAGGAGAAAAAGTTAGTAAGAAA GTTTGTGCTTGCTTGAAGATTTTCATGAAAACTTACAAGGGTTCCTTGTTGCAATTCTTCGACCAGCTTTTATCACGTATGGAACATATGTGGGTTAAGG ATAAAACAGTTAAAGAAAGAAAAATTGCCTTGAAGATTTTCACTGATGTAGTAGAGGAATTCCGAGAAGAAGCTTTGAAGTTCTGTGAGAGTGAACTCTT GTTGCTATTTAGAGCTTGCAATGATGATGAACCTGAAGTTCAAGAGGTTGCTGCACATGGAATTGGTGTTGCTGCAGCCTTTGGTGGATCTATCTTCAAA CCTCTGGTTGGAGAAGCAGTTTCTGCTCTAAATGCTAACATAAGCGATTCAATGGCATTGCACCGAGATTACATAAAGGCCCATGATGCTGCTGTTACAG CTCTCGGACAAATATACCTATTCCACAAGGACAGAATCAATGCAAGTGAGGTGTTTAGTACATGGTTAAGCCATTTGCCAATAAAGAACAATCTACTCGA AGTCAAAATTGCACATGATCTGCTGTGTTCAATAGTTGAGATATCAGAGGACGAACTTCTTCGCCAAGATTTTGCTTATCTTCCCAAAATCATCGCTGCT TTTGCAGAGATACTATGGGCGGATGATGAAACTTTAGCAACAGAGGAAACCGTCAACCGAGTGATTAAACAGTTGACGGACTTTAAGAGCAGGTTACCAT CAAACATCTGGTCATCTATCCTGTCAACCTTGGAACCCTCTCGTCAGAATGTTTTGCTACTTTCATTGTCATCGTAG
AA sequence Show only first row Show all	>Potri.007G084901.1 pacid=42766514 polypeptide=Potri.007G084901.1.p locus=Potri.007G084901 ID=Potri.007G084901.1.v4.1 annot-version=v4.1 MKMVDDMHHHVRWRAMYAVEEFSKYLHPELQNNYNQKVLPALTKAMDDFSDSKIQVQAAMATYHFVEYCTSNMLEPHLDEIISKLLRCLQKGKQLLKLWA LSALAAIAKSSQDRFLEYYRTVMPYLKVVMTKAEGESNSKLLSATVSCITAIWTVFGKDKFGDDTQQVVQLLVSTPISNLEIHDPMRIEGLRAWGRLCKC LGHRFQPYMEVAIPCLLQSARLTLPDDANVEESDERNRMIQIKTETLEEKATACVLLRDCVAELKEGIDLWIDEVAETLVPLLNFYEHAEVRIAAVLAMP EILKSSKAAIEKRLLQKSPFEKLCSDIIPALVEALVKEEVIKISAVMLDSLEDCLELSGPVLNIDQIKRFLSVIMDVLDTSISIPKVDEASEQGEKVSKK VCACLKIFMKTYKGSLLQFFDQLLSRMEHMWVKDKTVKERKIALKIFTDVVEEFREEALKFCESELLLLFRACNDDEPEVQEVAAHGIGVAAAFGGSIFK PLVGEAVSALNANISDSMALHRDYIKAHDAAVTALGQIYLFHKDRINASEVFSTWLSHLPIKNNLLEVKIAHDLLCSIVEISEDELLRQDFAYLPKIIAA FAEILWADDETLATEETVNRVIKQLTDFKSRLPSNIWSSILSTLEPSRQNVLLLSLSS

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G19820		EMB2734	embryo defective 2734, ARM rep...		Potri.007G084901 [exp]	0	1
AT5G42800		M318, TT3, DFR	dihydroflavonol 4-reductase (....		Potri.005G229500 [exp]	4.89	0.7946	Pt-DFR.1
AT4G10500			2-oxoglutarate (2OG) and Fe(II...		Potri.011G150200 [exp]	5.29	0.7489
AT3G59030		ATTT12, TT12	TRANSPARENT TESTA 12, A. THALI...		Potri.005G207500 [exp]	12.72	0.7358
AT3G13330		PA200	proteasome activating protein ...		Potri.001G470600 [exp]	15.29	0.6816
AT4G21200		ATGA2OX8	ARABIDOPSIS THALIANA GIBBERELL...		Potri.011G026700 [exp]	15.62	0.7140
AT5G13930		ATCHS, TT4, CHS	TRANSPARENT TESTA 4, CHALCONE ...		Potri.014G145100 [exp]	18.57	0.7136	Pt-CHS.7
AT1G75290			NAD(P)-binding Rossmann-fold s...		Potri.015G050200 [exp]	20.00	0.6948
AT2G28900		OEP16, ATOEP16-...	outer envelope protein 16, OUT...		Potri.001G239900 [exp]	23.02	0.6770
AT1G11925			Stigma-specific Stig1 family p...		Potri.004G006800 [exp]	23.36	0.6466
AT5G13930		ATCHS, TT4, CHS	TRANSPARENT TESTA 4, CHALCONE ...		Potri.001G051500 [exp]	24.61	0.7050	Pt-CHS.6,CHS2

Compare expression of checked genes

Potri.007G084901 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.